prot_H-elongata_contig83652.15993.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig83652.15993.1
Unique Nameprot_H-elongata_contig83652.15993.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length227
Homology
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BLAST of mRNA_H-elongata_contig83652.15993.1 vs. uniprot
Match: A0A6H5JMI5_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI5_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.810e-7
Identity = 38/104 (36.54%), Postives = 51/104 (49.04%), Query Frame = 0 
Query:  124 GSSNIWNAFIRGQGGKPLSKTRKDGTVEVVQGIIYPTPAPTRKKLIQCKYCEVTFHNEQGYSVHRRILHPRVNAHEGTRLSKSLRNG-EKIAMWPWEGVGLGRC 226
            G+ NI NAF +G G KP+ +TR DG+ E +  I +  P P +   + C  C   F N QG  VH +  H R       R   + R G E  ++ PW G   GRC
Sbjct:   35 GTHNIINAFAKGSG-KPVVRTRGDGSTEEITNINFTAPPPPQPT-VPCTKCNRRFFNTQGLGVHIKTDHEREAKISLQRWCSTNRKGAEASSLLPWGGTPSGRC 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83652.15993.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMI5_9PHAE2.810e-736.54C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 171..192

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83652contigH-elongata_contig83652:1032..2214 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83652.15993.1mRNA_H-elongata_contig83652.15993.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig83652 1032..2241 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig83652.15993.1 ID=prot_H-elongata_contig83652.15993.1|Name=mRNA_H-elongata_contig83652.15993.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp
MNAVALLRVKAELGKLRHKGALTTDQFQLLKTRAKHGVVTDEVLDLLGKA
WALRCDGTSDEQEYAEDISNVISKLPPVSQTSSTEAAPAQASQAQSVPSP
DPPAAVASKADRRKSNAMVKAAKGSSNIWNAFIRGQGGKPLSKTRKDGTV
EVVQGIIYPTPAPTRKKLIQCKYCEVTFHNEQGYSVHRRILHPRVNAHEG
TRLSKSLRNGEKIAMWPWEGVGLGRCW
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type