mRNA_H-elongata_contig83652.15993.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83652.15993.1
Unique NamemRNA_H-elongata_contig83652.15993.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig83652.15993.1 vs. uniprot
Match: A0A6H5JMI5_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI5_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.260e-7
Identity = 38/104 (36.54%), Postives = 51/104 (49.04%), Query Frame = 1 
Query:  397 GSSNIWNAFIRGQGGKPLSKTRKDGTVEVVQGIIYPTPAPTRKKLIQCKYCEVTFHNEQGYSVHRRILHPRVNAHEGTRLSKSLRNG-EKIAMWPWEGVGLGRC 705
            G+ NI NAF +G G KP+ +TR DG+ E +  I +  P P +   + C  C   F N QG  VH +  H R       R   + R G E  ++ PW G   GRC
Sbjct:   35 GTHNIINAFAKGSG-KPVVRTRGDGSTEEITNINFTAPPPPQPT-VPCTKCNRRFFNTQGLGVHIKTDHEREAKISLQRWCSTNRKGAEASSLLPWGGTPSGRC 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83652.15993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMI5_9PHAE3.260e-736.54C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83652contigH-elongata_contig83652:1032..2241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue1.2e-19
Seed eggNOG ortholog2880.D8LRF1
EggNOG OGs2DCSR@1,2S5KN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size709
Cds size681
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83652.15993.1prot_H-elongata_contig83652.15993.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83652 1032..2214 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931242.8917017-CDS-H-elongata_contig83652:1031..12921622931242.8917017-CDS-H-elongata_contig83652:1031..1292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83652 1032..1292 -
1691679756.620114-CDS-H-elongata_contig83652:1031..12921691679756.620114-CDS-H-elongata_contig83652:1031..1292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83652 1032..1292 -
1622931242.9244583-CDS-H-elongata_contig83652:1794..22141622931242.9244583-CDS-H-elongata_contig83652:1794..2214Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83652 1795..2214 -
1691679756.6294272-CDS-H-elongata_contig83652:1794..22141691679756.6294272-CDS-H-elongata_contig83652:1794..2214Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83652 1795..2214 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931242.9462059-UTR-H-elongata_contig83652:2214..22411622931242.9462059-UTR-H-elongata_contig83652:2214..2241Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83652 2215..2241 -
1691679756.6373363-UTR-H-elongata_contig83652:2214..22411691679756.6373363-UTR-H-elongata_contig83652:2214..2241Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83652 2215..2241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83652.15993.1

>prot_H-elongata_contig83652.15993.1 ID=prot_H-elongata_contig83652.15993.1|Name=mRNA_H-elongata_contig83652.15993.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp
MNAVALLRVKAELGKLRHKGALTTDQFQLLKTRAKHGVVTDEVLDLLGKA
WALRCDGTSDEQEYAEDISNVISKLPPVSQTSSTEAAPAQASQAQSVPSP
DPPAAVASKADRRKSNAMVKAAKGSSNIWNAFIRGQGGKPLSKTRKDGTV
EVVQGIIYPTPAPTRKKLIQCKYCEVTFHNEQGYSVHRRILHPRVNAHEG
TRLSKSLRNGEKIAMWPWEGVGLGRCW
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mRNA from alignment at H-elongata_contig83652:1032..2241-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83652.15993.1 ID=mRNA_H-elongata_contig83652.15993.1|Name=mRNA_H-elongata_contig83652.15993.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1210bp|location=Sequence derived from alignment at H-elongata_contig83652:1032..2241- (Himanthalia elongata Himel1 dioecious)
GCCAAGCAACAAGCGCTGTTGTTGTCCATGAACGCTGTGGCCTTACTTCG
CGTCAAGGCCGAGTTGGGCAAGCTGAGGCACAAGGGAGCGTTGACAACAG
ACCAGTTCCAATTGTTGAAGACCAGAGCGAAACATGGGGTAGTCACAGAC
GAGGTTTTGGACTTACTGGGCAAGGCGTGGGCACTGCGCTGCGATGGTAC
GAGCGACGAGCAGGAGTACGCTGAGGACATCAGCAACGTGATAAGCAAGC
TACCACCGGTCAGCCAGACTAGCTCCACAGAGGCGGCTCCTGCACAGGCC
TCGCAAGCACAATCGGTACCATCACCGGATCCTCCTGCGGCTGTAGCATC
AAAAGCCGATCGGAGGAAAAGCAACGCGATGGTGAAGGCCGCCAAGGGAT
CCTCGAACATCTGGAACGCCTTCATCCGAGGTCAGGGAGGCAAACCGGTG
AGTGCATGCTGTATGCTGTACAGTACAGTACTGTAGTACAGTAGAGTCGT
ATAATATCAGCCAATGTGTTGCATCAACATCCCCTTTGTGGCCGCTGCTG
TTCGGTAAAGTATTGTACGTGCTGTATCATACAGTACCCGAGTACAGTAC
TGTCTGAACTACTGTACCGTACTGCTGTCTGTGCTATAATACTGTACTGT
GCTGCTGTTTATACTGTACTACTGTACTGTATTGTACTTCTACTGCACGC
TGGACTGTATTGTACAGTACTGTACTGAACTGCAATGAATAGCTGAAATT
TTTGCTGTTCTGTTACAGCAACAGATATAATCTTTGATTGCTGTGAAGTA
CACTGCTGGAGCTTTTGTACAGCAGCGCCGCACACATTTTCGGGGTAACG
CGTGTGTAGAGATTCTGTACTTTGAGGTCGAGGGTGAAACAATGCAGATT
TGGTGGGCACTCACTCAATTATTTTACTTTCCACTTTGGTCACGCGCAGT
TGTCCAAGACACGCAAGGATGGAACCGTGGAAGTTGTGCAGGGCATCATC
TATCCGACACCTGCTCCAACGCGGAAAAAGCTGATCCAGTGCAAGTACTG
CGAGGTGACGTTCCATAACGAGCAAGGGTACTCGGTGCACCGGAGAATTT
TACATCCGCGAGTAAACGCGCACGAAGGAACGAGGCTCTCGAAGAGCTTG
CGAAACGGCGAGAAGATCGCGATGTGGCCGTGGGAAGGAGTGGGCTTGGG
CCGTTGCTGG
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Coding sequence (CDS) from alignment at H-elongata_contig83652:1032..2241-

>mRNA_H-elongata_contig83652.15993.1 ID=mRNA_H-elongata_contig83652.15993.1|Name=mRNA_H-elongata_contig83652.15993.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig83652:1032..2241- (Himanthalia elongata Himel1 dioecious)
ATGAACGCTGTGGCCTTACTTCGCGTCAAGGCCGAGTTGGGCAAGCTGAG
GCACAAGGGAGCGTTGACAACAGACCAGTTCCAATTGTTGAAGACCAGAG
CGAAACATGGGGTAGTCACAGACGAGGTTTTGGACTTACTGGGCAAGGCG
TGGGCACTGCGCTGCGATGGTACGAGCGACGAGCAGGAGTACGCTGAGGA
CATCAGCAACGTGATAAGCAAGCTACCACCGGTCAGCCAGACTAGCTCCA
CAGAGGCGGCTCCTGCACAGGCCTCGCAAGCACAATCGGTACCATCACCG
GATCCTCCTGCGGCTGTAGCATCAAAAGCCGATCGGAGGAAAAGCAACGC
GATGGTGAAGGCCGCCAAGGGATCCTCGAACATCTGGAACGCCTTCATCC
GAGGTCAGGGAGGCAAACCGATGAACGCTGTGGCCTTACTTCGCGTCAAG
GCCGAGTTGGGCAAGCTGAGGCACAAGGGAGCGTTGACAACAGACCAGTT
CCAATTGTTGAAGACCAGAGCGAAACATGGGGTAGTCACAGACGAGGTTT
TGGACTTACTGGGCAAGGCGTGGGCACTGCGCTGCGATGGTACGAGCGAC
GAGCAGGAGTACGCTGAGGACATCAGCAACGTGATAAGCAAGCTACCACC
GGTCAGCCAGACTAGCTCCACAGAGGCGGCTCCTGCACAGGCCTCGCAAG
CACAATCGGTACCATCACCGGATCCTCCTGCGGCTGTAGCATCAAAAGCC
GATCGGAGGAAAAGCAACGCGATGGTGAAGGCCGCCAAGGGATCCTCGAA
CATCTGGAACGCCTTCATCCGAGGTCAGGGAGGCAAACCGTTGTCCAAGA
CACGCAAGGATGGAACCGTGGAAGTTGTGCAGGGCATCATCTATCCGACA
CCTGCTCCAACGCGGAAAAAGCTGATCCAGTGCAAGTACTGCGAGGTGAC
GTTCCATAACGAGCAAGGGTACTCGGTGCACCGGAGAATTTTACATCCGC
GAGTAAACGCGCACGAAGGAACGAGGCTCTCGAAGAGCTTGCGAAACGGC
GAGAAGATCGCGATGTGGCCGTGGGAAGGAGTGGGCTTGGGCCGTTGCTG
GTTGTCCAAGACACGCAAGGATGGAACCGTGGAAGTTGTGCAGGGCATCA
TCTATCCGACACCTGCTCCAACGCGGAAAAAGCTGATCCAGTGCAAGTAC
TGCGAGGTGACGTTCCATAACGAGCAAGGGTACTCGGTGCACCGGAGAAT
TTTACATCCGCGAGTAAACGCGCACGAAGGAACGAGGCTCTCGAAGAGCT
TGCGAAACGGCGAGAAGATCGCGATGTGGCCGTGGGAAGGAGTGGGCTTG
GGCCGTTGCTGG
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