mRNA_H-elongata_contig8365.15992.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8365.15992.1 vs. uniprot
Match: A0A6H5K1I8_9PHAE (GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I8_9PHAE) HSP 1 Score: 529 bits (1362), Expect = 6.700e-183 Identity = 267/424 (62.97%), Postives = 323/424 (76.18%), Query Frame = 1
Query: 1 RFVTLASTFLAVYPTKRVGLPTFGNQVMIHRIMSREKPDVLHCTLDGMSPFLVLSAKLLNIPVVGSVHTDVLELLSELGVWPIVGWATGLKEAIGSRLIDSCATTSPSFQKKMSRRGIRCSHIIKTGVKVELFRPEARSDEVRGRLTFGNPDGLLVVYVGRLGPEKRMDKLLQMCASVDGVYLALIGDGALGARLAERHGCWTNQGSRRSTGGVYCKPRFLGHQDLAPVYATADVHVSCSQFETLGNTVLEAHACGTTVVVPRAQGFVDTVSHEEDGFLFDGSRLQEGAAMLKRLRDDRSLSRHMGERGRVKVKMQSPERVAQDMVDWYVRTCISLKGN--------AAAK---NVLRCLQAIICAVVVVLVITFWSTTDAIHNFSRNAVRYCVHTRNVLGNSSFFNKISNTYKALSNIPVQRD 1239
RFVTL S+FLAVYPTKR+ +PT N +I + E PDVLHCTLD +S F +L+AK ++PVVGSVHTDV ELL+EL V PI G KE + SRL+DSCATTSPSF+ K++ RG+ C HIIKTGV V FRP + EVR RLTFGNP+GLLVVYVGR GPEKR+DKL+QMC SVDGVYLALIGDGA+G L+ERHGCW+N G RR+ GGVYC+ FLGH+DLAPVYA+ADVHVSCS FETLGNTVLEAHA GT VVVPRAQGF+DTV+HEEDGFLFDG RL EGAA L RLRDDR L MGERGR KV+MQSPE V++ +++WY R S KG AA+ ++++ L + ++++LV+ W +A+ + VRYC + RNVLGNSSFFNK+SN+YKAL+NI V+R+
Sbjct: 38 RFVTLDSSFLAVYPTKRLAMPTLTNMNLICNTIRLEGPDVLHCTLDCISAFFILAAKFYHVPVVGSVHTDVQELLAELNVAPIAGSLITFKEGVESRLLDSCATTSPSFKSKLAGRGVVCDHIIKTGVTVGQFRPGVSNAEVRNRLTFGNPEGLLVVYVGRFGPEKRLDKLVQMCGSVDGVYLALIGDGAMGPALSERHGCWSNSGKRRTKGGVYCRIGFLGHEDLAPVYASADVHVSCSHFETLGNTVLEAHASGTAVVVPRAQGFIDTVNHEEDGFLFDGHRLAEGAAFLARLRDDRDLCASMGERGRQKVQMQSPEMVSKHVLEWYRRARASTKGQKITTSLATVAAEQLSSLVKVLMGVGICLLILLVVALWFAVEAVQVLGGSVVRYCHNARNVLGNSSFFNKVSNSYKALTNITVERE 461
BLAST of mRNA_H-elongata_contig8365.15992.1 vs. uniprot
Match: D7G4E3_ECTSI (Glycosyltransferase, family GT4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E3_ECTSI) HSP 1 Score: 334 bits (856), Expect = 3.560e-109 Identity = 166/260 (63.85%), Postives = 201/260 (77.31%), Query Frame = 1
Query: 493 EKRMDKLLQMCASVDGVYLALIGDGALGARLAERHGCWTNQGSRRSTGGVYCKPRFLGHQDLAPVYATADVHVSCSQFETLGNTVLEAHACGTTVVVPRAQGFVDTVSHEEDGFLFDGSRLQEGAAMLKRLRDDRSLSRHMGERGRVKVKMQSPERVAQDMVDWYVRTCISLKGNAAAKNV-------LRCLQAIICAV----VVVLVITFWSTTDAIHNFSRNAVRYCVHTRNVLGNSSFFNKISNTYKALSNIPVQRD 1239
+R+DKL+QMC SVDGVYLALIGDGA+G L+ERHGCW+N G RR+ GGVYC+ FLGH+DLAPVYA+ADVHVSCS FETLGNTVLEAHA GTTVVVPRAQGF+DTV+HEEDGFLFDG RL EGAA L RLRDDR L MGERGR KV++QSPE V++ +++WY RTC S KG ++ L L A++ V ++LV+ W +A+ F + VRYC + RNVLGNSSFFNK+SN+YKAL+NIPV+R+
Sbjct: 12 RERLDKLVQMCGSVDGVYLALIGDGAMGPVLSERHGCWSNSGKRRTKGGVYCRIGFLGHEDLAPVYASADVHVSCSHFETLGNTVLEAHASGTTVVVPRAQGFIDTVNHEEDGFLFDGHRLAEGAAFLARLRDDRDLCASMGERGRQKVQIQSPEMVSKHVLEWYRRTCASTKGQTVTTSLVTVAAERLSSLVAVLMGVGICLFILLVVALWFAVEAVQVFGGSVVRYCHNARNVLGNSSFFNKVSNSYKALTNIPVERE 271
BLAST of mRNA_H-elongata_contig8365.15992.1 vs. uniprot
Match: A0A835YPI7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPI7_9STRA) HSP 1 Score: 314 bits (805), Expect = 1.700e-98 Identity = 168/350 (48.00%), Postives = 221/350 (63.14%), Query Frame = 1
Query: 1 RFVTLASTFLAVYPTKRVGLPTFGNQVMIHRIMSREKPDVLHCTLDGMSPFLVLSAKLLNIPVVGSVHTDVLELLSELGVWPIVGWATGLKEAIGSRLIDSCATTSPSFQKKMSRRGIRCSHIIKTGVKVELFRPEARSDEVRGRLTFGNPDGLLVVYVGRLGPEKRMDKLLQMCASVDGVYLALIGDGALGARLAERHGCWTNQGSRRSTGGVYCKPRFLGHQDLAPVYATADVHVSCSQFETLGNTVLEAHACGTTVVVPRAQGFVDTVSHEEDGFLFDGSRL------QEGAAMLKRLRDDRSLSRHMGERGRVKVKMQSPERVAQDMVDWYVRTCISLKGNAAAKN 1032
++V L STF +YP+KR+ PT GN I +++ +PDV+HCT D ++ L+ K L IPVV S+HTDV L+ +G + + T LKE + S L+DSCATTS SF+ K+ ++G+ C +++KT V+V+ F P R + R +LTF +PD L+VYVGRL PEK +D L+ M SVD YLA+IGDG LG LA +HG + +YC+P FL H L VYA+AD H + S FETLGNTVLEAHACG VV PRAQGFVDTVSH DG LFD + L GA L LRDD +L +G GR KV + +P++VA+D+V WY G AAA+
Sbjct: 61 KYVHLESTFHDLYPSKRIAAPTLGNLWHIGHALAQVRPDVIHCTADAITLQFGLAGKALGIPVVTSIHTDVQLGLAAVGAPSLALYLTNLKERMESCLLDSCATTSESFKTKLLKQGVACDYVVKTAVQVDKFNPGRRCAKTRAQLTFNDPDAFLIVYVGRLAPEKGLDTLVTMARSVDRCYLAVIGDGPLGPHLAAQHG---------AANRLYCRPGFLDHDALPAVYASADAHATASVFETLGNTVLEAHACGVPVVAPRAQGFVDTVSHGVDGLLFDAAGLGAVGAAASGARALAALRDDPALRARLGAAGRAKVLLHAPDQVARDIVQWY--------GAAAARG 393
BLAST of mRNA_H-elongata_contig8365.15992.1 vs. uniprot
Match: A0A7S4FQE8_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FQE8_9EUGL) HSP 1 Score: 263 bits (672), Expect = 6.920e-80 Identity = 156/340 (45.88%), Postives = 198/340 (58.24%), Query Frame = 1
Query: 1 RFVTLASTFLAVYPTKRVGLPTFGNQVMIHRIMSREKPDVLHCTLDGMSPFLVLSAKLLNIPVVGSVHTDVLELLSEL-GVWPIVGWATGLKEAIGSRLIDSCATTSPSFQKKMSRRGIRCSHIIKTGVKVELFRPE----ARSDEVRGRLTFGNPDGLLVVYVGRLGPEKRMDKLLQMC--ASVDGVYLALIGDGALGARLAERHGCWTNQGSRRSTGGVYCKPRFLGHQDLAPVYATADVHVSCSQFETLGNTVLEAHACGTTVVVPRAQGFVDTVSHEEDGFLFDGSRLQEGAAMLKRLRDDRSLSRHMGERGRVKVKMQ-SPERVAQDMVDWYVRT 996
R+VTL S F A+YP KRV P+ N I + +PDVLHCT D ++ L +PV S+HTD+ ++L + P + G++ AI SRL+DSCATTS SF++++ +R R H+++TGV +F P A D +R RLTF +PD LV+YVGRL PEK +D L+ A ++ VYLAL+GDG L R+A HG T VYC P FL H LA +YA D HVS S FET GNTVLEA A GT VVVP AQGF DTV H DGFLF+ + + +LR D L MG GR K +P VA+D VDWY RT
Sbjct: 56 RYVTLESIFPALYPEKRVAFPSMKNAFRIWGALRAFQPDVLHCTSDSLALTFCAIGAALGVPVGASMHTDLDKVLRSVHAALPALVICWGIEAAI-SRLVDSCATTSVSFKEELLQRWCRIDHVVRTGVDTAVFDPRCLGAADRDRLRCRLTFDHPDAFLVLYVGRLSPEKSIDVLVDALSQAGMEAVYLALVGDGPLAGRMAALHGAHTR---------VYCVPEFLPHSKLAALYAACDAHVSASVFETFGNTVLEAQASGTPVVVPDAQGFRDTVRHGADGFLFEPGSARSLGLRVAKLRADPRLRDEMGRAGRGKALAGLTPAAVARDYVDWYGRT 385
BLAST of mRNA_H-elongata_contig8365.15992.1 vs. uniprot
Match: A0A482RVI5_9ARCH (Glycosyltransferase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVI5_9ARCH) HSP 1 Score: 190 bits (483), Expect = 5.300e-54 Identity = 107/239 (44.77%), Postives = 141/239 (59.00%), Query Frame = 1
Query: 118 VLHCTLDGMSPFLVLSAKLLNIPVVGSVHTDVLELLSELGVWPIVGWATGLKEAIGSRLIDSCATTSPSFQKKMSRRGIRCSHIIKTGVKVELFRPEARSDEVRGRLTFGNPDG-LLVVYVGRLGPEKRMDKLLQMCASVDG----VYLALIGDGALGARLAERHGCWTNQGSRRSTGGVYCKPRFLGHQDLAPVYATADVHVSCSQFETLGNTVLEAHACGTTVVVPRAQGFVDTVSH 819
++H D S VL LL IPVVGS HTD+++LL + W KE S ++D+ ATTS SFQ K+ + C H++ T V +F P S +VR LTF + D L VYVGR+ EKR+D L++ + YLA+IGDG A+ A H S+ S +YC+PRFL H +LA +YA++DVHV+ S+FETLGNTVLEA+AC VV PR QGFV+TV H
Sbjct: 1 MVHVVADAYSQSFVLVGLLLGIPVVGSFHTDIIDLLRTHHAFFFQEWFVLAKEMTDSFVLDAAATTSQSFQHKLRTHQVHCDHVLITAVDSGVFAPSRCSAQVRSELTFNDADNAFLCVYVGRISEEKRIDVLIEALRLLRSGGTRAYLAIIGDGPQAAKYAALH-------SKESR--IYCRPRFLSHDELAGLYASSDVHVTASEFETLGNTVLEANACALPVVTPRTQGFVNTVQH 230
BLAST of mRNA_H-elongata_contig8365.15992.1 vs. uniprot
Match: D7G4E4_ECTSI (SqdX n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E4_ECTSI) HSP 1 Score: 170 bits (430), Expect = 1.740e-46 Identity = 85/144 (59.03%), Postives = 105/144 (72.92%), Query Frame = 1
Query: 1 RFVTLASTFLAVYPTKRVGLPTFGNQVMIHRIMSREKPDVLHCTLDGMSPFLVLSAKLLNIPVVGSVHTDVLELLSELGVWPIVGWATGLKEAIGSRLIDSCATTSPSFQKKMSRRGIRCSHIIKTGVKVELFRPEARSDEVRG 432
RF TL S+FLAVYPTKR+ +PT N +I + E+PDVLHCTLD +S F +L+AK ++PVVGSVHTDV ELL+EL V PI G KE + SRL+DSCATTSPSF+ K++ RG+ C HIIKTGVKV FRP+ R +G
Sbjct: 58 RFFTLDSSFLAVYPTKRLAMPTLTNMNLICNTIRLERPDVLHCTLDCISAFFILAAKFYHVPVVGSVHTDVQELLAELNVAPIAGSLITFKEGVESRLLDSCATTSPSFKAKLAGRGVVCDHIIKTGVKVGQFRPDVRFGPEKG 201
BLAST of mRNA_H-elongata_contig8365.15992.1 vs. uniprot
Match: I0HYP0_CALAS (Mannosyltransferase MgtA n=2 Tax=Caldilinea aerophila TaxID=133453 RepID=I0HYP0_CALAS) HSP 1 Score: 139 bits (350), Expect = 5.560e-33 Identity = 116/348 (33.33%), Postives = 170/348 (48.85%), Query Frame = 1
Query: 1 RFVTLASTFLAVYPTKRVGLPTFG--NQVMIHRIMSREKPDVLHCTLDGMSPFLVLS-AKLLNIPVVGSVHTDVLELLSELGVW----PIVGWATGLKEAIGSRLIDSCATTSPSFQKKMSRRGIRCSHIIKTGVKVELFRPEARSDEVRGRLTFGNPDGLLVVYVGRLGPEKRMDKLLQMCASVDGVYLALIGDGALGARLAERHGCWTNQGSRRSTGGVYCKPRFLGHQDLAPVYATADVHVSCSQFETLGNTVLEAHACGTTVVVPRAQGFVDTVSHEEDGFLFDGSRLQEGAAMLKRLRDDRSLSRHMGERGRVKVKMQSPERVAQDMVDWYVRTCISLKGNAA 1023
R V LA +YP ++ P + N++ R D++H ++ L A+ L +P+V S HTDV + GV P+V + + A L S T Q+++ +G + H+ GV E F P RS E R RLT G D L++YVGRL PEKR+D LL + ++ V LA++GDG +L + TG +L DLA YA++D+ V + ETLGN VLEA A G V+ PR+ G +D+V E G LF+ AM + L ++R +GE GR +V QS ERV +++ YV T + K N++
Sbjct: 51 RIVGLAGVPFPLYPELKLVPPVYNVLNELRAFRA------DLVHVVNPVSLGYVGLRHARRLKLPLVASYHTDVPGFAARWGVRFLYRPLVRFFRWIHNAADLNLCPSTVT-----QRELIAQGYQRVHVWSRGVDSERFHPGRRSQEWRMRLTEGEIDRPLLLYVGRLSPEKRVDWLLPVLDALPHVRLAIVGDGPARPQLERLFARYRVH----FTG-------YLSGLDLAAAYASSDIFVFPAANETLGNVVLEAMASGLPVLAPRSGGVLDSVVDGETGLLFEPESPASLVAMARTLVHAPDVARRLGEHGRARVLHQSWERVLDGLLEHYV-TLLDGKINSS 375
BLAST of mRNA_H-elongata_contig8365.15992.1 vs. uniprot
Match: A0A645AT65_9ZZZZ (GDP-mannose-dependent alpha-mannosyltransferase n=2 Tax=root TaxID=1 RepID=A0A645AT65_9ZZZZ) HSP 1 Score: 137 bits (345), Expect = 1.020e-32 Identity = 105/320 (32.81%), Postives = 152/320 (47.50%), Query Frame = 1
Query: 37 YPTKRVGLPTFGNQVMIHRIMSREKPDVLHCTLD-GMSPFLVLSAKLLNIPVVGSVHTDVLELLSELGVWPIVGWATGLKEAIGS--RLIDSCATTSPSFQKKMSRRGIRCSHIIKTGVKVELFRPEARSDEVRGRLTFGNPDGLLVVYVGRLGPEKRMDKLLQMCASVDGVYLALIGDGALGARLAERHGCWTNQGSRRSTGGVYCKPRFLGHQDLAPVYATADVHVSCSQFETLGNTVLEAHACGTTVVVPRAQGFVDTVSHEEDGFLFDGSRLQEGAAMLKRLRDDRSLSRHMGERGRVKVKMQSPERVAQDMVDWY 987
YP VGLPT I R + PDV+H ++ + VLS K NIP++ S HTD+ + + + + +A K IG L D TSP GIR + V ++ P+ RS +R RLT G+P+ LVVYVGR+ PEK+++ L + + GV LA++G G A+L + T V+ ++ +DLA YA+ADV S ETLG LE+ A G VV RA G D ++ E+GFLF QE A + L +D L GR + + + ++D+Y
Sbjct: 29 YPEIHVGLPT----PRIARTLEEFTPDVVHAVNPVALAAYGVLSGKRRNIPLLASFHTDLPKYTEAMDLGFLQNFA---KRYIGGLHNLADMNLCTSPQMVDAARAIGIRRVKLWPKAVDTVMYHPDKRSAAMRARLTDGHPEQPLVVYVGRIAPEKKLEVLRRALDRMPGVRLAIVGSGPARAQLEQDFA---------GTPTVFTG--YMSGEDLAAAYASADVFAFPSTTETLGLVALESMASGVPVVGARAGGIPDVIADGENGFLFSPGDAQELADQVMLLVNDPELRHRFAAAGRAETEKWGWRAATERLLDYY 330
BLAST of mRNA_H-elongata_contig8365.15992.1 vs. uniprot
Match: UPI0019F58FA8 (Glycosyltransferase family 1 protein n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019F58FA8) HSP 1 Score: 136 bits (343), Expect = 3.430e-32 Identity = 95/272 (34.93%), Postives = 146/272 (53.68%), Query Frame = 1
Query: 34 VYPTKRVGLPTFGNQVMIHRIMSREKPDVLHCTLDGMSPFL-VLSAKLLNIPVVGSVHTDVLELLSELGVWPIVGWATGLKEAIGSRL-IDSCATTSPSFQKKMSRRGIRCSHIIKTGVKVELFRPEARSDEVRGRLTFGNPDGLLVVYVGRLGPEKRMDKLLQMCASVDGVYLALIGDGALGARLAERHGCWTNQGSRRSTGGVYCKPRFLGHQDLAPVYATADVHVSCSQFETLGNTVLEAHACGTTVVVPRAQGFVDTVSHEEDGFLFD 843
+YP ++ LP + I + R +PD++H + V AK L+IP+V S HT + + L G+ + G L +A+ ++ I+ C TS + Q +++ GI + + GV +LFRP S +R RL+ G+PD L++YVGRL EK +D++ + S+ G LAL+GDG L E+H TN G +LG ++LA YA+AD + S+ ETLG +LEA A G VV + G D V+H E+G+LF+
Sbjct: 62 LYPELKLALP----RPSIGEALERFQPDLIHVVNPAVLGLAGVFYAKTLDIPLVASYHTHLPKYLEHYGLGMLEGLMWELLKAVHNQARINLC--TSTAMQTELTDHGIERVQVWQRGVDTDLFRPALASVAMRDRLSQGHPDAPLLLYVGRLSAEKEVDRIKPVLESIPGARLALVGDGPHREEL-EKHFADTNT---HFVG-------YLGGEELAAAYASADAFIFPSRTETLGLVLLEAMAAGCPVVAANSGGIPDIVTHGENGYLFE 316
BLAST of mRNA_H-elongata_contig8365.15992.1 vs. uniprot
Match: U9W085_9CYAN (Group 1 glycosyl transferase n=8 Tax=Cyanobacteria TaxID=1117 RepID=U9W085_9CYAN) HSP 1 Score: 136 bits (342), Expect = 4.640e-32 Identity = 99/282 (35.11%), Postives = 145/282 (51.42%), Query Frame = 1
Query: 28 LAVYPTKRVGLPTFGNQVMIHRIMSREKPDVLHCTLDGMSPFL-VLSAKLLNIPVVGSVHTDVLELLSELGVWPIVGWATGLKEAIGSRL-IDSCATTSPSFQKKMSRRGIRCSHIIKTGVKVELFRPEARSDEVRGRLTFGNPDGLLVVYVGRLGPEKRMDKLLQMCASVDGVYLALIGDGALGARLAERHGCWTNQGSRRSTGGVYCKPRFLGHQDLAPVYATADVHVSCSQFETLGNTVLEAHACGTTVVVPRAQGFVDTVSHEEDGFLFDGSRLQEGA 867
+ +YP ++ LP + I + KPD++H + V AK L IP+V S HT + + L G G L +A+ + I+ C TS + Q +++ GI + + GV ELFRP S E+RGRL+ G+PD L++YVGRL EK +D++ + A++ LAL+GDG L E G+ + G +LG ++LA YA+AD V S+ ETLG +LEA A G V A G D V+ +GFLFD + +EGA
Sbjct: 60 MPLYPELKLALP----RPSIGEALEAFKPDLVHVVNPAVLGLAGVYYAKALEIPLVASYHTHLPKYLEHYGFGMFEGMLWELLKAVHNNARINLC--TSTAMQTELTEHGIENVKVWQRGVDTELFRPSLASREMRGRLSQGHPDAPLLLYVGRLSAEKEVDRIKPILAAIPEARLALVGDGPYREELEEHFA-----GTATNFVG------YLGGEELASAYASADAFVFPSRTETLGLVLLEAMAAGCPTVAANAGGIPDIVTDGTNGFLFD-PKDEEGA 323 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8365.15992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8365.15992.1 >prot_H-elongata_contig8365.15992.1 ID=prot_H-elongata_contig8365.15992.1|Name=mRNA_H-elongata_contig8365.15992.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=389bp MIHRIMSREKPDVLHCTLDGMSPFLVLSAKLLNIPVVGSVHTDVLELLSEback to top mRNA from alignment at H-elongata_contig8365:2..9601- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8365.15992.1 ID=mRNA_H-elongata_contig8365.15992.1|Name=mRNA_H-elongata_contig8365.15992.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=9600bp|location=Sequence derived from alignment at H-elongata_contig8365:2..9601- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8365:2..9601- >mRNA_H-elongata_contig8365.15992.1 ID=mRNA_H-elongata_contig8365.15992.1|Name=mRNA_H-elongata_contig8365.15992.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2334bp|location=Sequence derived from alignment at H-elongata_contig8365:2..9601- (Himanthalia elongata Himel1 dioecious)back to top |