mRNA_H-elongata_contig83571.15986.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83571.15986.1
Unique NamemRNA_H-elongata_contig83571.15986.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig83571.15986.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 251 bits (640), Expect = 1.160e-83
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   61 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 468
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of mRNA_H-elongata_contig83571.15986.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 249 bits (637), Expect = 4.070e-83
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   61 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 468
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
[Close]
BLAST of mRNA_H-elongata_contig83571.15986.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 249 bits (636), Expect = 4.730e-83
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:   61 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 468
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_H-elongata_contig83571.15986.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 249 bits (637), Expect = 5.330e-83
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   61 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 468
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of mRNA_H-elongata_contig83571.15986.1 vs. uniprot
Match: A0A7S0BCZ4_9RHOD (Hypothetical protein n=2 Tax=Eukaryota TaxID=2759 RepID=A0A7S0BCZ4_9RHOD)

HSP 1 Score: 250 bits (638), Expect = 6.220e-83
Identity = 133/140 (95.00%), Postives = 138/140 (98.57%), Query Frame = 1 
Query:   49 FQGSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 468
            ++G MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   26 YEGEMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 165
[Close]
BLAST of mRNA_H-elongata_contig83571.15986.1 vs. uniprot
Match: A0A672K8D0_SINGR (Histone H3 n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A672K8D0_SINGR)

HSP 1 Score: 249 bits (635), Expect = 7.180e-83
Identity = 133/138 (96.38%), Postives = 137/138 (99.28%), Query Frame = 1 
Query:   55 GSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 468
            GSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 GSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 138
[Close]
BLAST of mRNA_H-elongata_contig83571.15986.1 vs. uniprot
Match: A0A2J7RT98_9NEOP (Histone H3 (Fragment) n=4 Tax=Bilateria TaxID=33213 RepID=A0A2J7RT98_9NEOP)

HSP 1 Score: 249 bits (635), Expect = 7.430e-83
Identity = 133/138 (96.38%), Postives = 137/138 (99.28%), Query Frame = 1 
Query:   55 GSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 468
            GSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 GSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139
[Close]
BLAST of mRNA_H-elongata_contig83571.15986.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 251 bits (640), Expect = 1.350e-82
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   61 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 468
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   74 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
[Close]
BLAST of mRNA_H-elongata_contig83571.15986.1 vs. uniprot
Match: A0A8B9F8D8_9PSIT (Histone H3 n=2 Tax=Amniota TaxID=32524 RepID=A0A8B9F8D8_9PSIT)

HSP 1 Score: 248 bits (633), Expect = 1.500e-82
Identity = 132/139 (94.96%), Postives = 138/139 (99.28%), Query Frame = 1 
Query:   52 QGSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 468
            +G+MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 RGAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139
[Close]
BLAST of mRNA_H-elongata_contig83571.15986.1 vs. uniprot
Match: A0A8C1ET08_CYPCA (Histone H3 n=4 Tax=Euteleostomi TaxID=117571 RepID=A0A8C1ET08_CYPCA)

HSP 1 Score: 248 bits (632), Expect = 2.060e-82
Identity = 132/138 (95.65%), Postives = 137/138 (99.28%), Query Frame = 1 
Query:   55 GSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 468
            G+MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 GTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83571.15986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4GZ05_9STRA1.160e-8399.26Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A6V1P6C6_HETAK4.070e-8398.53Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
A0A1Z5K8H0_FISSO4.730e-8398.53Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
A0A7S1BJN3_9STRA5.330e-8398.53Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
A0A7S0BCZ4_9RHOD6.220e-8395.00Hypothetical protein n=2 Tax=Eukaryota TaxID=2759 ... [more]
A0A672K8D0_SINGR7.180e-8396.38Histone H3 n=2 Tax=Euteleostomi TaxID=117571 RepID... [more]
A0A2J7RT98_9NEOP7.430e-8396.38Histone H3 (Fragment) n=4 Tax=Bilateria TaxID=3321... [more]
K0S7I6_THAOC1.350e-8299.26Histone domain-containing protein n=8 Tax=Bacillar... [more]
A0A8B9F8D8_9PSIT1.500e-8294.96Histone H3 n=2 Tax=Amniota TaxID=32524 RepID=A0A8B... [more]
A0A8C1ET08_CYPCA2.060e-8295.65Histone H3 n=4 Tax=Euteleostomi TaxID=117571 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83571contigH-elongata_contig83571:2093..2563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.5
Seed ortholog evalue7.9e-66
Seed eggNOG ortholog2880.D7FWI7
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categorysignal peptide
Exons1
Model size471
Cds size471
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931241.8110964-CDS-H-elongata_contig83571:2092..25631622931241.8110964-CDS-H-elongata_contig83571:2092..2563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83571 2093..2563 +
1691679756.2632177-CDS-H-elongata_contig83571:2092..25631691679756.2632177-CDS-H-elongata_contig83571:2092..2563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83571 2093..2563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83571.15986.1prot_H-elongata_contig83571.15986.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83571 2093..2563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83571.15986.1

>prot_H-elongata_contig83571.15986.1 ID=prot_H-elongata_contig83571.15986.1|Name=mRNA_H-elongata_contig83571.15986.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp
YQSCFIIFSSSSISALFQGSMARTKQTARKSTGGKAPRKQLATKAARKSA
PATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK
SDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR
IRGERS*
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mRNA from alignment at H-elongata_contig83571:2093..2563+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83571.15986.1 ID=mRNA_H-elongata_contig83571.15986.1|Name=mRNA_H-elongata_contig83571.15986.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=471bp|location=Sequence derived from alignment at H-elongata_contig83571:2093..2563+ (Himanthalia elongata Himel1 dioecious)
TATCAGAGTTGCTTCATTATATTTTCATCCTCCTCTATATCTGCGCTGTT
TCAAGGTTCAATGGCTCGCACTAAGCAGACCGCTCGCAAGTCTACTGGGG
GCAAGGCTCCGCGCAAGCAGCTGGCCACCAAGGCTGCCCGTAAGTCTGCC
CCCGCCACTGGTGGTGTGAAAAAGCCCCACCGTTACAGGCCAGGCACCGT
GGCCTTGCGTGAGATCCGCCGTTATCAAAAGTCGACTGAACTTCTAATCC
GTAAGCTGCCTTTCCAGCGTCTGGTGCGCGAAATTGCCCAGGACTTTAAG
AGCGACCTGCGCTTCCAGGGCTCTGCCGTGTTGGCCCTTCAGGAGGCCGC
CGAAGCCTACCTCGTTGGTCTATTCGAAGACACCAATCTTTGCGCTATCC
ACGCGAAGCGCGTCACCATCATGCCCAAGGATATCCAGCTGGCCAGGCGC
ATCCGCGGAGAGCGCTCGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig83571:2093..2563+

>mRNA_H-elongata_contig83571.15986.1 ID=mRNA_H-elongata_contig83571.15986.1|Name=mRNA_H-elongata_contig83571.15986.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig83571:2093..2563+ (Himanthalia elongata Himel1 dioecious)
TATCAGAGTTGCTTCATTATATTTTCATCCTCCTCTATATCTGCGCTGTT
TCAAGGTTCAATGGCTCGCACTAAGCAGACCGCTCGCAAGTCTACTGGGG
GCAAGGCTCCGCGCAAGCAGCTGGCCACCAAGGCTGCCCGTAAGTCTGCC
CCCGCCACTGGTGGTGTGAAAAAGCCCCACCGTTACAGGCCAGGCACCGT
GGCCTTGCGTGAGATCCGCCGTTATCAAAAGTCGACTGAACTTCTAATCC
GTAAGCTGCCTTTCCAGCGTCTGGTGCGCGAAATTGCCCAGGACTTTAAG
AGCGACCTGCGCTTCCAGGGCTCTGCCGTGTTGGCCCTTCAGGAGGCCGC
CGAAGCCTACCTCGTTGGTCTATTCGAAGACACCAATCTTTGCGCTATCC
ACGCGAAGCGCGTCACCATCATGCCCAAGGATATCCAGCTGGCCAGGCGC
ATCCGCGGAGAGCGCTCGTAATATCAGAGTTGCTTCATTATATTTTCATC
CTCCTCTATATCTGCGCTGTTTCAAGGTTCAATGGCTCGCACTAAGCAGA
CCGCTCGCAAGTCTACTGGGGGCAAGGCTCCGCGCAAGCAGCTGGCCACC
AAGGCTGCCCGTAAGTCTGCCCCCGCCACTGGTGGTGTGAAAAAGCCCCA
CCGTTACAGGCCAGGCACCGTGGCCTTGCGTGAGATCCGCCGTTATCAAA
AGTCGACTGAACTTCTAATCCGTAAGCTGCCTTTCCAGCGTCTGGTGCGC
GAAATTGCCCAGGACTTTAAGAGCGACCTGCGCTTCCAGGGCTCTGCCGT
GTTGGCCCTTCAGGAGGCCGCCGAAGCCTACCTCGTTGGTCTATTCGAAG
ACACCAATCTTTGCGCTATCCACGCGAAGCGCGTCACCATCATGCCCAAG
GATATCCAGCTGGCCAGGCGCATCCGCGGAGAGCGCTCGTAA
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