mRNA_H-elongata_contig83514.15982.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83514.15982.1
Unique NamemRNA_H-elongata_contig83514.15982.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig83514.15982.1 vs. uniprot
Match: D7G086_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G086_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 3.810e-43
Identity = 93/139 (66.91%), Postives = 106/139 (76.26%), Query Frame = 1 
Query:   43 PLFPGSSADARGLRQTLELPASGVTVLCVDPPASYTGEAFLRSALLGRAATVHIHAGEGDGDLAASLSRGLGIQFMTAKLQLSALWPGLA-GRQWKRGAGVARAREG----------ELSDIGAILDTVTAALEEIRDQ 426
            PL+PGSSADAR LR+ L  PASGVTVLCVDPPASYTG+AF+RSALLGRAATVH+ AGEG G LA+ L+RGLG++FM  KLQ+SAL PGLA G Q   GA   R R G          ELSDI A+L+T TAALEEIR+Q
Sbjct:    4 PLYPGSSADARALREVLSRPASGVTVLCVDPPASYTGDAFVRSALLGRAATVHVQAGEGYGSLASCLARGLGVEFMAIKLQMSALLPGLAAGEQASSGA---RGRAGGSSSTDATNSELSDIRAVLETATAALEEIRNQ 139
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BLAST of mRNA_H-elongata_contig83514.15982.1 vs. uniprot
Match: A0A6H5JKL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL7_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 6.510e-40
Identity = 90/150 (60.00%), Postives = 106/150 (70.67%), Query Frame = 1 
Query:   43 PLFPGSSADARGLRQTLELPASGVTVLCVDPPASYTGEAFLRSALLGRAATVHIHAGEGDGDLAASLSRGLGIQFMTAKLQ------------LSALWPGLAGRQW-----KRGAGVARARE-----GELSDIGAILDTVTAALEEIRDQ 426
            PL+PGSSADAR LR+ L  PASGVTVLCVDPPASYTG+AF+RSALLGRAATVH+ AGEG G LA+ L+RGLG++FM  KLQ            +SAL PGLA  +      + GAG  R+        ELSDI A+L+T TAALEEIR+Q
Sbjct:    4 PLYPGSSADARALREMLSRPASGVTVLCVDPPASYTGDAFVRSALLGRAATVHVQAGEGYGSLASCLARGLGVEFMAIKLQVLSSHAAFFVGKMSALLPGLAAGEQASSGARGGAGAGRSSSTDTTNSELSDIRAVLETATAALEEIRNQ 153
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83514.15982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G086_ECTSI3.810e-4366.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKL7_9PHAE6.510e-4060.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83514contigH-elongata_contig83514:911..1668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931241.5771523-CDS-H-elongata_contig83514:910..11931622931241.5771523-CDS-H-elongata_contig83514:910..1193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83514 911..1193 -
1691679756.1843061-CDS-H-elongata_contig83514:910..11931691679756.1843061-CDS-H-elongata_contig83514:910..1193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83514 911..1193 -
1622931241.5954041-CDS-H-elongata_contig83514:1525..16681622931241.5954041-CDS-H-elongata_contig83514:1525..1668Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83514 1526..1668 -
1691679756.1951315-CDS-H-elongata_contig83514:1525..16681691679756.1951315-CDS-H-elongata_contig83514:1525..1668Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83514 1526..1668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83514.15982.1prot_H-elongata_contig83514.15982.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83514 911..1668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83514.15982.1

>prot_H-elongata_contig83514.15982.1 ID=prot_H-elongata_contig83514.15982.1|Name=mRNA_H-elongata_contig83514.15982.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp
NGGGGGSRGQAAQLPLFPGSSADARGLRQTLELPASGVTVLCVDPPASYT
GEAFLRSALLGRAATVHIHAGEGDGDLAASLSRGLGIQFMTAKLQLSALW
PGLAGRQWKRGAGVARAREGELSDIGAILDTVTAALEEIRDQ
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mRNA from alignment at H-elongata_contig83514:911..1668-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83514.15982.1 ID=mRNA_H-elongata_contig83514.15982.1|Name=mRNA_H-elongata_contig83514.15982.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=758bp|location=Sequence derived from alignment at H-elongata_contig83514:911..1668- (Himanthalia elongata Himel1 dioecious)
AACGGTGGAGGAGGCGGTAGCAGGGGGCAGGCAGCGCAGTTACCTCTGTT
CCCTGGATCGTCGGCGGATGCGAGGGGACTGAGGCAAACGCTGGAGTTGC
CGGCGAGTGGTGTCACAGTGCTCTGCGTCGATCCTCCAGCAAGGTATGAA
GGACCAAGAACTGAAATATACTGACTTTGGTGAACCATGTCACCCCTCCG
CTGATGAGCTCAACACAACACGCCATTCAAGGGTCCCGCCATTAGATTAT
CTCGACGCGACAGTTCGTTCTCTGGTATGGCGCCACGGGAGATGACATAT
CACATGGCATGTTATCGCAGCACGACGGTCTCTCTCCGAGGGCGCGTTTT
GCCACTTCCAATAAGACGGTTTTGTACTCTTTCAACTCGGCACGGTACGC
CGAAATAGATTCACATCCCCACCCCCCGCGCCCCTCTGACGGCGAAACAC
CTTCGACAATCACAATCACTAACAGTTACACGGGAGAGGCGTTTCTCCGT
AGCGCACTGCTTGGTCGAGCGGCGACGGTGCACATCCACGCGGGCGAAGG
CGACGGAGACCTGGCGGCGTCTCTCTCTCGGGGTCTGGGGATTCAGTTTA
TGACTGCCAAGCTGCAGCTGTCGGCGTTGTGGCCGGGGCTAGCGGGCCGG
CAGTGGAAGCGAGGGGCTGGCGTCGCCAGGGCGAGGGAGGGGGAACTGTC
GGATATCGGTGCGATTCTCGATACGGTGACCGCGGCTCTAGAGGAAATCA
GAGACCAG
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Coding sequence (CDS) from alignment at H-elongata_contig83514:911..1668-

>mRNA_H-elongata_contig83514.15982.1 ID=mRNA_H-elongata_contig83514.15982.1|Name=mRNA_H-elongata_contig83514.15982.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig83514:911..1668- (Himanthalia elongata Himel1 dioecious)
AACGGTGGAGGAGGCGGTAGCAGGGGGCAGGCAGCGCAGTTACCTCTGTT
CCCTGGATCGTCGGCGGATGCGAGGGGACTGAGGCAAACGCTGGAGTTGC
CGGCGAGTGGTGTCACAGTGCTCTGCGTCGATCCTCCAGCAAGAACGGTG
GAGGAGGCGGTAGCAGGGGGCAGGCAGCGCAGTTACCTCTGTTCCCTGGA
TCGTCGGCGGATGCGAGGGGACTGAGGCAAACGCTGGAGTTGCCGGCGAG
TGGTGTCACAGTGCTCTGCGTCGATCCTCCAGCAAGTTACACGGGAGAGG
CGTTTCTCCGTAGCGCACTGCTTGGTCGAGCGGCGACGGTGCACATCCAC
GCGGGCGAAGGCGACGGAGACCTGGCGGCGTCTCTCTCTCGGGGTCTGGG
GATTCAGTTTATGACTGCCAAGCTGCAGCTGTCGGCGTTGTGGCCGGGGC
TAGCGGGCCGGCAGTGGAAGCGAGGGGCTGGCGTCGCCAGGGCGAGGGAG
GGGGAACTGTCGGATATCGGTGCGATTCTCGATACGGTGACCGCGGCTCT
AGAGGAAATCAGAGACCAGTTACACGGGAGAGGCGTTTCTCCGTAGCGCA
CTGCTTGGTCGAGCGGCGACGGTGCACATCCACGCGGGCGAAGGCGACGG
AGACCTGGCGGCGTCTCTCTCTCGGGGTCTGGGGATTCAGTTTATGACTG
CCAAGCTGCAGCTGTCGGCGTTGTGGCCGGGGCTAGCGGGCCGGCAGTGG
AAGCGAGGGGCTGGCGTCGCCAGGGCGAGGGAGGGGGAACTGTCGGATAT
CGGTGCGATTCTCGATACGGTGACCGCGGCTCTAGAGGAAATCAGAGACC
AG
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