mRNA_H-elongata_contig83464.15981.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83464.15981.1
Unique NamemRNA_H-elongata_contig83464.15981.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig83464.15981.1 vs. uniprot
Match: D7FJG4_ECTSI (Prefoldin subunit, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJG4_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 1.570e-26
Identity = 51/66 (77.27%), Postives = 63/66 (95.45%), Query Frame = 1
Query:    1 NRMVMETLEPMDATRRAYRLVGGVLVERTVGEVLPTVRANEEGIKQVLQQLAKSQADKEKAAAEWK 198
            ++MV++TLEP++ TRRAYRLVGGVLVERTVGEVLPTV+AN+EGIKQ+LQQLA ++A+KEK AAEWK
Sbjct:   52 HQMVVDTLEPLEGTRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWK 117          
BLAST of mRNA_H-elongata_contig83464.15981.1 vs. uniprot
Match: A0A7S0CI05_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CI05_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 6.780e-17
Identity = 38/66 (57.58%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    1 NRMVMETLEPMDATRRAYRLVGGVLVERTVGEVLPTVRANEEGIKQVLQQLAKSQADKEKAAAEWK 198
            +R+V +TL+P++ TRRAYRLVGGVLVERTVGE+LP V  N+E I+ VL  L K+   K+K  ++WK
Sbjct:   70 HRLVEDTLKPLETTRRAYRLVGGVLVERTVGEILPAVTTNKENIQMVLDNLQKNMEAKQKETSDWK 135          
BLAST of mRNA_H-elongata_contig83464.15981.1 vs. uniprot
Match: K3WSV0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSV0_GLOUD)

HSP 1 Score: 73.6 bits (179), Expect = 2.190e-15
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 1
Query:   10 VMETLEPMDATRRAYRLVGGVLVERTVGEVLPTVRANEEGIKQVLQQLAKSQADKEKAAAEW 195
            V++TL+ + ATR+AYR+VGGVLVERTV EVLP V +N +GI QVL QL +S   KE++A EW
Sbjct:   41 VIQTLKDLPATRKAYRMVGGVLVERTVAEVLPAVTSNRDGIAQVLTQLNESIKQKEESANEW 102          
BLAST of mRNA_H-elongata_contig83464.15981.1 vs. uniprot
Match: A0A5D6XZ09_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZ09_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.190e-15
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   10 VMETLEPMDATRRAYRLVGGVLVERTVGEVLPTVRANEEGIKQVLQQLAKSQADKEKAAAEW 195
            V++TL+ +   R+AYR+VGGVLVERTV EVLP V AN +GI QVL QL +S   KEK+A +W
Sbjct:   42 VLQTLQGLPGARKAYRMVGGVLVERTVAEVLPAVSANRDGIAQVLAQLGESLKQKEKSADDW 103          
BLAST of mRNA_H-elongata_contig83464.15981.1 vs. uniprot
Match: A0A835YP58_9STRA (Putative prefoldin subunit (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP58_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.710e-15
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    7 MVMETLEPMD--ATRRAYRLVGGVLVERTVGEVLPTVRANEEGIKQVLQQLAKSQADKEKAAAEWK 198
            +VMETLE ++    RRA+RLVGGVLVERTV +VLP+V+AN  GIKQVL  LA     KE+AAA WK
Sbjct:   36 LVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWK 101          
BLAST of mRNA_H-elongata_contig83464.15981.1 vs. uniprot
Match: L8GFE5_ACACA (Prefoldin subunit 2, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GFE5_ACACA)

HSP 1 Score: 72.4 bits (176), Expect = 1.100e-14
Identity = 39/66 (59.09%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 NRMVMETLEPMDATRRAYRLVGGVLVERTVGEVLPTVRANEEGIKQVLQQLAKSQADKEKAAAEWK 198
            +R+V++ +  +DA RR YRLVGGVLVERTVGEVLP VR N EGI+Q+L+ L  S   K+KA  E+K
Sbjct:   38 HRLVIDAVSGLDAGRRCYRLVGGVLVERTVGEVLPAVRKNLEGIEQILKTLNASLLQKDKALNEFK 103          
BLAST of mRNA_H-elongata_contig83464.15981.1 vs. uniprot
Match: A0A7S2R7M0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R7M0_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.310e-14
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 NRMVMETLEPMDATRRAYRLVGGVLVERTVGEVLPTVRANEEGIKQVLQQLAKSQADKEKAAAEWK 198
            +++V +TL P+D  RRA+RLVGGVLVERTV EVLP+VR+N E +  V+  + +   D++K  AEWK
Sbjct:   42 HKLVEQTLAPIDDNRRAFRLVGGVLVERTVSEVLPSVRSNRENLDSVIASMEQRLKDRQKETAEWK 107          
BLAST of mRNA_H-elongata_contig83464.15981.1 vs. uniprot
Match: K0S7I7_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S7I7_THAOC)

HSP 1 Score: 71.6 bits (174), Expect = 1.770e-14
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    1 NRMVMETLEPMDATRRAYRLVGGVLVERTVGEVLPTVRANEEGIKQVLQQLAKSQADKEKAAAEWK 198
            +R+V ETLEPMD  RRA+RLVGGVLVERT+ EVLPTV  N + +  +++Q+      K+K  +EWK
Sbjct:   43 HRLVEETLEPMDPDRRAFRLVGGVLVERTIREVLPTVTENRKRLDDLIEQVKTQMEAKQKDVSEWK 108          
BLAST of mRNA_H-elongata_contig83464.15981.1 vs. uniprot
Match: A0A3M6VHU8_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHU8_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.490e-14
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   10 VMETLEPMDATRRAYRLVGGVLVERTVGEVLPTVRANEEGIKQVLQQLAKSQADKEKAAAEW 195
            V++TL  +   R+AYR++GGVLVERTV EVLP V+AN +GI QVL+QL +S   KEK A EW
Sbjct:   41 VIQTLTELPNGRKAYRMIGGVLVERTVQEVLPAVKANRDGIAQVLKQLNESIKHKEKTADEW 102          
BLAST of mRNA_H-elongata_contig83464.15981.1 vs. uniprot
Match: A0A7S2UDR3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UDR3_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.950e-14
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    1 NRMVMETLEPMDATRRAYRLVGGVLVERTVGEVLPTVRANEEGIKQVLQQLAKSQADKEKAAAEWK 198
            +R+V ETL+P+D  RRA+RLVGGVLVERTVGEVLP+V  N   + +V++ L      K+K  A WK
Sbjct:   14 HRLVEETLKPLDPDRRAFRLVGGVLVERTVGEVLPSVMTNRSNLDEVVKTLQTRLETKQKETAAWK 79          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83464.15981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJG4_ECTSI1.570e-2677.27Prefoldin subunit, putative n=2 Tax=Ectocarpus Tax... [more]
A0A7S0CI05_9STRA6.780e-1757.58Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
K3WSV0_GLOUD2.190e-1561.29Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6XZ09_9STRA3.190e-1559.68Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A835YP58_9STRA3.710e-1563.64Putative prefoldin subunit (Fragment) n=1 Tax=Trib... [more]
L8GFE5_ACACA1.100e-1459.09Prefoldin subunit 2, putative n=1 Tax=Acanthamoeba... [more]
A0A7S2R7M0_9STRA1.310e-1453.03Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
K0S7I7_THAOC1.770e-1454.55Uncharacterized protein n=2 Tax=Thalassiosira ocea... [more]
A0A3M6VHU8_9STRA3.490e-1459.68Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A7S2UDR3_9STRA3.950e-1454.55Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83464contigH-elongata_contig83464:1741..1938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue6e-20
Seed eggNOG ortholog2880.D7FJG4
KEGG koko:K09549
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0008150,GO:0009987,GO:0010638,GO:0033043,GO:0044183,GO:0044424,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051493,GO:0051495,GO:0065007
EggNOG free text desc.protein binding involved in protein folding
EggNOG OGsKOG4098@1,KOG4098@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPrefoldin subunit 2
Ec32 orthologEc-14_006240.1
Exons1
Model size198
Cds size192
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931241.508105-CDS-H-elongata_contig83464:1740..19321622931241.508105-CDS-H-elongata_contig83464:1740..1932Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83464 1741..1932 -
1691679756.154419-CDS-H-elongata_contig83464:1740..19321691679756.154419-CDS-H-elongata_contig83464:1740..1932Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83464 1741..1932 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931241.5299056-UTR-H-elongata_contig83464:1932..19381622931241.5299056-UTR-H-elongata_contig83464:1932..1938Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83464 1933..1938 -
1691679756.1695337-UTR-H-elongata_contig83464:1932..19381691679756.1695337-UTR-H-elongata_contig83464:1932..1938Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83464 1933..1938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83464.15981.1prot_H-elongata_contig83464.15981.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83464 1741..1932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83464.15981.1

>prot_H-elongata_contig83464.15981.1 ID=prot_H-elongata_contig83464.15981.1|Name=mRNA_H-elongata_contig83464.15981.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MVMETLEPMDATRRAYRLVGGVLVERTVGEVLPTVRANEEGIKQVLQQLA
KSQADKEKAAAEWK
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mRNA from alignment at H-elongata_contig83464:1741..1938-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83464.15981.1 ID=mRNA_H-elongata_contig83464.15981.1|Name=mRNA_H-elongata_contig83464.15981.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig83464:1741..1938- (Himanthalia elongata Himel1 dioecious)
AACAGAATGGTGATGGAAACCCTGGAGCCCATGGACGCTACCCGGCGAGC TTACCGCCTCGTGGGTGGGGTGTTGGTTGAGCGCACGGTGGGAGAGGTTC TGCCCACAGTGAGGGCAAATGAGGAGGGCATCAAGCAGGTCCTGCAGCAG CTGGCGAAGAGTCAGGCAGACAAGGAGAAGGCGGCGGCAGAGTGGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig83464:1741..1938-

>mRNA_H-elongata_contig83464.15981.1 ID=mRNA_H-elongata_contig83464.15981.1|Name=mRNA_H-elongata_contig83464.15981.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig83464:1741..1938- (Himanthalia elongata Himel1 dioecious)
ATGGTGATGGAAACCCTGGAGCCCATGGACGCTACCCGGCGAGCTTACCG
CCTCGTGGGTGGGGTGTTGGTTGAGCGCACGGTGGGAGAGGTTCTGCCCA
CAGTGAGGGCAAATGAGGAGGGCATCAAGCAGGTCCTGCAGCAGCTGGCG
AAGAGTCAGGCAGACAAGGAGAAGGCGGCGGCAGAGTGGAAGATGGTGAT
GGAAACCCTGGAGCCCATGGACGCTACCCGGCGAGCTTACCGCCTCGTGG
GTGGGGTGTTGGTTGAGCGCACGGTGGGAGAGGTTCTGCCCACAGTGAGG
GCAAATGAGGAGGGCATCAAGCAGGTCCTGCAGCAGCTGGCGAAGAGTCA
GGCAGACAAGGAGAAGGCGGCGGCAGAGTGGAAG
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