mRNA_H-elongata_contig8345.15980.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8345.15980.1
Unique NamemRNA_H-elongata_contig8345.15980.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8345.15980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8345contigH-elongata_contig8345:6730..8519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSET domain protein
Ec32 orthologEc-06_005230.1
Exons1
Model size1790
Cds size1143
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8345.15980.1prot_H-elongata_contig8345.15980.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8345 7004..8146 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931241.3996654-UTR-H-elongata_contig8345:6729..70031622931241.3996654-UTR-H-elongata_contig8345:6729..7003Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8345 6730..7003 +
1691679756.1272447-UTR-H-elongata_contig8345:6729..70031691679756.1272447-UTR-H-elongata_contig8345:6729..7003Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8345 6730..7003 +
1622931241.4436834-UTR-H-elongata_contig8345:8146..85191622931241.4436834-UTR-H-elongata_contig8345:8146..8519Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8345 8147..8519 +
1691679756.143619-UTR-H-elongata_contig8345:8146..85191691679756.143619-UTR-H-elongata_contig8345:8146..8519Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8345 8147..8519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931241.4260845-CDS-H-elongata_contig8345:7003..81461622931241.4260845-CDS-H-elongata_contig8345:7003..8146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8345 7004..8146 +
1691679756.1355507-CDS-H-elongata_contig8345:7003..81461691679756.1355507-CDS-H-elongata_contig8345:7003..8146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8345 7004..8146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8345.15980.1

>prot_H-elongata_contig8345.15980.1 ID=prot_H-elongata_contig8345.15980.1|Name=mRNA_H-elongata_contig8345.15980.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=381bp
MKGKICVRAGCEKVANFGVPSRNQQRVCLEHAETGMVDLDPKCGRRGCSR
LARFGVPGSIHRKFCINHAEEGMVSFTSAMCGREGCGKHASFGTAGSLNR
EFCSQHAIEGMVDNFNRKCSRGGCGRKATYGIMGSHKREYCSDHAPKGMV
NMNMSSRGCRHIGCKKEPSYGVAGSREREFCVLHAKDGMVNVTGKTCGRG
GCGKEASYGKVGSRKREFCAQHAEEGMVNVSGKKCRRGGCSKLASFGLMG
SRRREFCVQHAENGMVNISGNRCSQGGCSKLIHFEMARNGQKFCLQHAVE
GMIDVNYHGIPPEIHGEYKHPVSDPKVRGSNSNGDVINKRPDGAAAPVTP
RAPSPISWSTITNKDIKSEVMISFAPASGR*
back to top

mRNA from alignment at H-elongata_contig8345:6730..8519+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8345.15980.1 ID=mRNA_H-elongata_contig8345.15980.1|Name=mRNA_H-elongata_contig8345.15980.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1790bp|location=Sequence derived from alignment at H-elongata_contig8345:6730..8519+ (Himanthalia elongata Himel1 dioecious)
AGGCGATCACGACGTCAACCCACACATCGTACTGCGCCCCATCTGGAGGG
AGCATCAAACGGCAGCAGTTCTTCACGAGCCACTCTCAACAAAGCGTCGT
GGCATAGCTCGCGAGGCGCCCTCAGAGGCGACACGGATAGCGGTGGTACT
AAGCAGTGGAGGGCAGGGGAAACAAATTCAGGCGTACTGGCTGTTCGAAG
AAGGCAACCTTCGGAGTGCCTGACAGTCGCAACCAGAGGTTTGTGCACTA
AACGACAAAGAGGGCCTGGTTAGCATGAAAGGCAAAATCTGTGTCCGTGC
AGGATGCGAGAAGGTTGCCAACTTCGGCGTACCTAGTAGAAACCAGCAGA
GGGTTTGCTTAGAACACGCGGAAACGGGTATGGTGGACTTGGACCCGAAG
TGCGGTCGTCGGGGCTGCTCGAGGTTGGCAAGGTTCGGCGTACCAGGCAG
CATCCACCGGAAATTTTGTATCAACCACGCCGAGGAAGGTATGGTGTCTT
TTACAAGCGCCATGTGCGGGCGTGAAGGCTGCGGGAAGCATGCGAGCTTT
GGCACGGCTGGCAGCCTCAACCGGGAGTTTTGTTCGCAACACGCCATAGA
GGGCATGGTGGACAACTTTAACAGGAAGTGCAGCCGTGGAGGCTGCGGGA
GAAAGGCGACCTACGGCATTATGGGCAGCCATAAGCGGGAGTATTGCTCA
GATCATGCGCCGAAGGGAATGGTGAACATGAACATGAGTAGCAGGGGGTG
CCGACACATAGGCTGTAAAAAGGAGCCAAGCTACGGCGTGGCGGGCAGCC
GCGAACGCGAGTTCTGCGTACTACACGCCAAAGACGGAATGGTGAACGTA
ACTGGCAAGACCTGTGGACGTGGAGGGTGCGGGAAAGAGGCAAGCTATGG
CAAGGTGGGCAGCCGCAAACGCGAGTTTTGTGCCCAACACGCCGAAGAGG
GTATGGTGAACGTTAGTGGTAAAAAATGCCGTCGTGGAGGGTGCTCTAAG
CTGGCGAGCTTCGGCCTAATGGGCAGCCGCAGGCGGGAGTTCTGTGTACA
ACACGCCGAGAATGGCATGGTGAACATCAGTGGTAACAGGTGCAGCCAAG
GAGGGTGTTCTAAGCTGATACATTTCGAGATGGCGAGAAACGGGCAAAAG
TTCTGCTTGCAACACGCGGTAGAGGGAATGATTGATGTTAATTATCATGG
CATTCCTCCAGAGATACATGGTGAGTATAAACACCCCGTAAGCGATCCAA
AAGTTAGGGGAAGCAATAGCAATGGTGATGTGATTAACAAGCGACCAGAT
GGTGCTGCAGCTCCTGTCACGCCGAGGGCTCCATCCCCAATATCATGGTC
AACCATCACGAACAAAGATATCAAGTCTGAGGTGATGATATCGTTTGCGC
CTGCATCGGGGCGGTGATATAGTGTGCAGCTTCCTGGCGGCGTCGGAAGC
AAGGCTCGTGCCCTAGCTAACGTGGTTCATGCTCCAGCTATCGCCTTCAC
GGCCATAATTGGTTGACGTTTGAAAATAGTTTGCCTCCTCGCCTCGATCG
ATAATTAGTGATGCATCGTTCGATTCCATGAGGCATGGCCTGACCTCTCG
GTTTGTGGTTTTGACAGTATGAAATAATCAATAATCTGGGTCTACATACG
TCGGCACATTTTTACATTTTTGTAGCCATTCTAAGTTATCTAAGATTCTG
GAAAAATTAGGGATAGGTAATAGTGCTGCAGCAAATCTTCGTCGACATTT
ATTTGCGCTTTACTAGTTTCGCTCGCTCGAGGATATATAT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig8345:6730..8519+

>mRNA_H-elongata_contig8345.15980.1 ID=mRNA_H-elongata_contig8345.15980.1|Name=mRNA_H-elongata_contig8345.15980.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2286bp|location=Sequence derived from alignment at H-elongata_contig8345:6730..8519+ (Himanthalia elongata Himel1 dioecious)
ATGAAAGGCAAAATCTGTGTCCGTGCAGGATGCGAGAAGGTTGCCAACTT
CGGCGTACCTAGTAGAAACCAGCAGAGGGTTTGCTTAGAACACGCGGAAA
CGGGTATGGTGGACTTGGACCCGAAGTGCGGTCGTCGGGGCTGCTCGAGG
TTGGCAAGGTTCGGCGTACCAGGCAGCATCCACCGGAAATTTTGTATCAA
CCACGCCGAGGAAGGTATGGTGTCTTTTACAAGCGCCATGTGCGGGCGTG
AAGGCTGCGGGAAGCATGCGAGCTTTGGCACGGCTGGCAGCCTCAACCGG
GAGTTTTGTTCGCAACACGCCATAGAGGGCATGGTGGACAACTTTAACAG
GAAGTGCAGCCGTGGAGGCTGCGGGAGAAAGGCGACCTACGGCATTATGG
GCAGCCATAAGCGGGAGTATTGCTCAGATCATGCGCCGAAGGGAATGGTG
AACATGAACATGAGTAGCAGGGGGTGCCGACACATAGGCTGTAAAAAGGA
GCCAAGCTACGGCGTGGCGGGCAGCCGCGAACGCGAGTTCTGCGTACTAC
ACGCCAAAGACGGAATGGTGAACGTAACTGGCAAGACCTGTGGACGTGGA
GGGTGCGGGAAAGAGGCAAGCTATGGCAAGGTGGGCAGCCGCAAACGCGA
GTTTTGTGCCCAACACGCCGAAGAGGGTATGGTGAACGTTAGTGGTAAAA
AATGCCGTCGTGGAGGGTGCTCTAAGCTGGCGAGCTTCGGCCTAATGGGC
AGCCGCAGGCGGGAGTTCTGTGTACAACACGCCGAGAATGGCATGGTGAA
CATCAGTGGTAACAGGTGCAGCCAAGGAGGGTGTTCTAAGCTGATACATT
TCGAGATGGCGAGAAACGGGCAAAAGTTCTGCTTGCAACACGCGGTAGAG
GGAATGATTGATGTTAATTATCATGGCATTCCTCCAGAGATACATGGTGA
GTATAAACACCCCGTAAGCGATCCAAAAGTTAGGGGAAGCAATAGCAATG
GTGATGTGATTAACAAGCGACCAGATGGTGCTGCAGCTCCTGTCACGCCG
AGGGCTCCATCCCCAATATCATGGTCAACCATCACGAACAAAGATATCAA
GTCTGAGGTGATGATATCGTTTGCGCCTGCATCGGGGCGGTGAATGAAAG
GCAAAATCTGTGTCCGTGCAGGATGCGAGAAGGTTGCCAACTTCGGCGTA
CCTAGTAGAAACCAGCAGAGGGTTTGCTTAGAACACGCGGAAACGGGTAT
GGTGGACTTGGACCCGAAGTGCGGTCGTCGGGGCTGCTCGAGGTTGGCAA
GGTTCGGCGTACCAGGCAGCATCCACCGGAAATTTTGTATCAACCACGCC
GAGGAAGGTATGGTGTCTTTTACAAGCGCCATGTGCGGGCGTGAAGGCTG
CGGGAAGCATGCGAGCTTTGGCACGGCTGGCAGCCTCAACCGGGAGTTTT
GTTCGCAACACGCCATAGAGGGCATGGTGGACAACTTTAACAGGAAGTGC
AGCCGTGGAGGCTGCGGGAGAAAGGCGACCTACGGCATTATGGGCAGCCA
TAAGCGGGAGTATTGCTCAGATCATGCGCCGAAGGGAATGGTGAACATGA
ACATGAGTAGCAGGGGGTGCCGACACATAGGCTGTAAAAAGGAGCCAAGC
TACGGCGTGGCGGGCAGCCGCGAACGCGAGTTCTGCGTACTACACGCCAA
AGACGGAATGGTGAACGTAACTGGCAAGACCTGTGGACGTGGAGGGTGCG
GGAAAGAGGCAAGCTATGGCAAGGTGGGCAGCCGCAAACGCGAGTTTTGT
GCCCAACACGCCGAAGAGGGTATGGTGAACGTTAGTGGTAAAAAATGCCG
TCGTGGAGGGTGCTCTAAGCTGGCGAGCTTCGGCCTAATGGGCAGCCGCA
GGCGGGAGTTCTGTGTACAACACGCCGAGAATGGCATGGTGAACATCAGT
GGTAACAGGTGCAGCCAAGGAGGGTGTTCTAAGCTGATACATTTCGAGAT
GGCGAGAAACGGGCAAAAGTTCTGCTTGCAACACGCGGTAGAGGGAATGA
TTGATGTTAATTATCATGGCATTCCTCCAGAGATACATGGTGAGTATAAA
CACCCCGTAAGCGATCCAAAAGTTAGGGGAAGCAATAGCAATGGTGATGT
GATTAACAAGCGACCAGATGGTGCTGCAGCTCCTGTCACGCCGAGGGCTC
CATCCCCAATATCATGGTCAACCATCACGAACAAAGATATCAAGTCTGAG
GTGATGATATCGTTTGCGCCTGCATCGGGGCGGTGA
back to top