mRNA_H-elongata_contig83415.15979.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83415.15979.1
Unique NamemRNA_H-elongata_contig83415.15979.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83415.15979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83415contigH-elongata_contig83415:1664..2764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size228
Cds size228
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83415.15979.1prot_H-elongata_contig83415.15979.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83415 1664..2764 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931241.3051164-CDS-H-elongata_contig83415:1663..17461622931241.3051164-CDS-H-elongata_contig83415:1663..1746Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83415 1664..1746 -
1691679756.088983-CDS-H-elongata_contig83415:1663..17461691679756.088983-CDS-H-elongata_contig83415:1663..1746Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83415 1664..1746 -
1622931241.3229535-CDS-H-elongata_contig83415:2231..23031622931241.3229535-CDS-H-elongata_contig83415:2231..2303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83415 2232..2303 -
1691679756.0997446-CDS-H-elongata_contig83415:2231..23031691679756.0997446-CDS-H-elongata_contig83415:2231..2303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83415 2232..2303 -
1622931241.339073-CDS-H-elongata_contig83415:2691..27641622931241.339073-CDS-H-elongata_contig83415:2691..2764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83415 2692..2764 -
1691679756.1104019-CDS-H-elongata_contig83415:2691..27641691679756.1104019-CDS-H-elongata_contig83415:2691..2764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83415 2692..2764 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83415.15979.1

>prot_H-elongata_contig83415.15979.1 ID=prot_H-elongata_contig83415.15979.1|Name=mRNA_H-elongata_contig83415.15979.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
GPIPPELGNLGALHVLNMYRNKLTGPIPPELGNLGALRELLLSMNELTGS
IPEVLGRISNLRVLDLSKNRLTGEW*
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mRNA from alignment at H-elongata_contig83415:1664..2764-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83415.15979.1 ID=mRNA_H-elongata_contig83415.15979.1|Name=mRNA_H-elongata_contig83415.15979.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1101bp|location=Sequence derived from alignment at H-elongata_contig83415:1664..2764- (Himanthalia elongata Himel1 dioecious)
GGTCCCATACCGCCCGAGCTGGGGAATCTTGGAGCCCTGCACGTGCTCAA
CATGTATAGGAACAAGCTGACCGGTAAGTGCAATAAGAGCAGTTGTATAA
TACCTACCGTATGTAATTTATGGTAGGATCCCAGAGCTTCGATATATTTA
TAGTACGCACCAGGCCCTAGGGATAGGGGGTGTATTTATTGTGCTAATAC
CTTCCTTGTTACCGAGGTGCCATCCCGTAGATATTAGTGTCATTTGCTCT
TTACGAAACCTCTTGCCATTCCGTAGGATCTTGGCTTATTCTGCCTTTTC
CGAAACCTTTCTCTCTGCAGTAGCTAACTCGGAGGTGATTTTCTGCCAAC
GCTTACATTATTTTCGACGAATAAATTCATAAATCCTAGGCATGAGCGGG
TACTCATCGATAAAATATATGGTATTCATTGATAAAACCTATGGTTGTCG
GTACGCTTCAGGTCCAATCCCCCCTGAGCTGGGGAATCTTGGAGCCCTTC
GGGAGCTCTTGCTGAGCATGAATGAGCTCACAGGTGAGTGTATTGGGAGT
AGTAGCCAGTGTCTAGCATTATTTTTGGGACAGGCCCCTGCTCGAACCAG
ATAATATAGTATAATATAGTCTCATTTACAAAGCAACCCTGAAGACGACT
CTCGGATAGAAACAGGAAAAAAACAAAGCTTAATCGTCGTGCTATAATCG
ACGAGGTGCAGGAGTGCTAGACCTGCATTGCGATAAAGAGGTCTAGGCGT
CAACCCGACCGGGGAAATATCTTAGCGCATAGGTGGAATATACAGCGTTT
CGGTTGGTGGGACTGGCAACCTAGCACGTTAAGTGGCCACATCGGCAGAA
CGTAAGAACGTAAGATGTCACCGGCAACGGGTGGATCCACAGCTTTCAAG
GTAAAAAAAAATACTTTTGATTTGTTGATCATGTCTGCAAGGTACGTGTT
CGAGGGTCCAACGTAATGACGTTGTTCAATAAATGATACCACGAAGTATA
TTCATGCAAAACATTCAGGTTCGATTCCGGAGGTTCTCGGACGAATCAGC
AACCTGAGGGTTCTTGACCTCTCCAAAAACCGTCTAACAGGTGAGTGGTA
A
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Coding sequence (CDS) from alignment at H-elongata_contig83415:1664..2764-

>mRNA_H-elongata_contig83415.15979.1 ID=mRNA_H-elongata_contig83415.15979.1|Name=mRNA_H-elongata_contig83415.15979.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig83415:1664..2764- (Himanthalia elongata Himel1 dioecious)
GGTCCCATACCGCCCGAGCTGGGGAATCTTGGAGCCCTGCACGTGCTCAA
CATGTATAGGAACAAGCTGACCGGGTCCCATACCGCCCGAGCTGGGGAAT
CTTGGAGCCCTGCACGTGCTCAACATGTATAGGAACAAGCTGACCGGTCC
AATCCCCCCTGAGCTGGGGAATCTTGGAGCCCTTCGGGAGCTCTTGCTGA
GCATGAATGAGCTCACAGGTCCAATCCCCCCTGAGCTGGGGAATCTTGGA
GCCCTTCGGGAGCTCTTGCTGAGCATGAATGAGCTCACAGGTTCGATTCC
GGAGGTTCTCGGACGAATCAGCAACCTGAGGGTTCTTGACCTCTCCAAAA
ACCGTCTAACAGGTGAGTGGTAAGTTCGATTCCGGAGGTTCTCGGACGAA
TCAGCAACCTGAGGGTTCTTGACCTCTCCAAAAACCGTCTAACAGGTGAG
TGGTAA
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