mRNA_H-elongata_contig83360.15975.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83360.15975.1
Unique NamemRNA_H-elongata_contig83360.15975.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig83360.15975.1 vs. uniprot
Match: D7FNB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNB6_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.190e-27
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 QVIGPLYFVHGPAVLEAVFASMEEWPAPCPGSLCPLPFLSETIMFQVPEIDMPPQVAAKYR 183
            +VIGPLYF HG AVLEAVF+S E+WPAPCPGSLCPLPFL ET+MFQVP+IDMPPQVA+ YR
Sbjct:  147 KVIGPLYFTHGSAVLEAVFSSFEDWPAPCPGSLCPLPFLGETVMFQVPDIDMPPQVASNYR 207
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BLAST of mRNA_H-elongata_contig83360.15975.1 vs. uniprot
Match: A0A6H5KGC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGC5_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.630e-27
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 QVIGPLYFVHGPAVLEAVFASMEEWPAPCPGSLCPLPFLSETIMFQVPEIDMPPQVAAKYR 183
            +VIGPLYF HG AVLEAVF+S E+WPAPCPGSLCPLPFL ET+MF VP+IDMPPQVA+KYR
Sbjct:  177 EVIGPLYFTHGSAVLEAVFSSFEDWPAPCPGSLCPLPFLGETVMFLVPDIDMPPQVASKYR 237
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83360.15975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNB6_ECTSI1.190e-2781.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGC5_9PHAE1.630e-2781.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83360contigH-elongata_contig83360:481..675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue1.2e-23
Seed eggNOG ortholog2880.D7FNB6
KEGG koko:K17654
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG2432@1,KOG2432@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931241.0309446-CDS-H-elongata_contig83360:480..6751622931241.0309446-CDS-H-elongata_contig83360:480..675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83360 481..675 +
1691679755.9810362-CDS-H-elongata_contig83360:480..6751691679755.9810362-CDS-H-elongata_contig83360:480..675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83360 481..675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83360.15975.1prot_H-elongata_contig83360.15975.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83360 481..675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83360.15975.1

>prot_H-elongata_contig83360.15975.1 ID=prot_H-elongata_contig83360.15975.1|Name=mRNA_H-elongata_contig83360.15975.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
QVIGPLYFVHGPAVLEAVFASMEEWPAPCPGSLCPLPFLSETIMFQVPEI
DMPPQVAAKYRSAPF
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mRNA from alignment at H-elongata_contig83360:481..675+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83360.15975.1 ID=mRNA_H-elongata_contig83360.15975.1|Name=mRNA_H-elongata_contig83360.15975.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig83360:481..675+ (Himanthalia elongata Himel1 dioecious)
CAGGTGATCGGGCCGCTCTACTTTGTTCATGGCCCGGCGGTGCTGGAAGC
TGTTTTCGCTTCCATGGAGGAGTGGCCTGCACCTTGCCCAGGATCCTTAT
GCCCCCTGCCGTTCCTGAGCGAGACCATTATGTTTCAGGTTCCCGAGATC
GACATGCCTCCCCAAGTCGCCGCGAAATACAGGTCAGCTCCGTTC
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Coding sequence (CDS) from alignment at H-elongata_contig83360:481..675+

>mRNA_H-elongata_contig83360.15975.1 ID=mRNA_H-elongata_contig83360.15975.1|Name=mRNA_H-elongata_contig83360.15975.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig83360:481..675+ (Himanthalia elongata Himel1 dioecious)
CAGGTGATCGGGCCGCTCTACTTTGTTCATGGCCCGGCGGTGCTGGAAGC
TGTTTTCGCTTCCATGGAGGAGTGGCCTGCACCTTGCCCAGGATCCTTAT
GCCCCCTGCCGTTCCTGAGCGAGACCATTATGTTTCAGGTTCCCGAGATC
GACATGCCTCCCCAAGTCGCCGCGAAATACAGGTCAGCTCCGTTCCAGGT
GATCGGGCCGCTCTACTTTGTTCATGGCCCGGCGGTGCTGGAAGCTGTTT
TCGCTTCCATGGAGGAGTGGCCTGCACCTTGCCCAGGATCCTTATGCCCC
CTGCCGTTCCTGAGCGAGACCATTATGTTTCAGGTTCCCGAGATCGACAT
GCCTCCCCAAGTCGCCGCGAAATACAGGTCAGCTCCGTTC
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