prot_H-elongata_contig83349.15973.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig83349.15973.1
Unique Nameprot_H-elongata_contig83349.15973.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length231
Homology
BLAST of mRNA_H-elongata_contig83349.15973.1 vs. uniprot
Match: D8LHE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE9_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 2.030e-27
Identity = 92/236 (38.98%), Postives = 119/236 (50.42%), Query Frame = 0
Query:    1 MEVYLQVFGMVGLVETAIAFAYALLNRDEFTHFEAMFFLVYGSLEVASEALFLGLSSITQCAEEKCCNCMIDGGGDLVEGMKAWAKDVFHN--AVARDAVYGVTDFAASSFSALLFSLLSVVLWATFCPVWG--FSATNGAEDARMALSVASAAGVVLTLLMPLLFLRARRQD-----HFVNNTIYLV----YGMEKVFVLYFLLSDAERLCAGSLGRAFAAFLILEISSICFVVV 223
            MEV +QVFG  GLVET +  AY +     FT FE  +FL   S EVA E LFL  + I          C++    +     +A  KD  H+  AVA D+ Y   +FAA S ++ + SLL ++ WATF PVWG  F+   G E  R+ALS  S  GVV  L       RARR           +T+ +V    Y  +K F +  L S  ERLC G LG+A    L +EI S+ F VV
Sbjct:    1 MEVAVQVFGAAGLVETVVEVAYVVTTLRRFTTFEEWYFLASVSFEVAGELLFL-FAGI----------CLLSRNSNRRTTARALTKDPVHHVAAVATDSDYMSWEFAALSLASTVVSLLPLLAWATFLPVWGEPFAEDGGDEGLRVALSAFSLTGVVAMLASGE---RARRSSPGSKRQRAMDTLVVVGVVSYATQKAFEVCVLASAWERLCTGVLGKALVVLLTVEILSVAFAVV 222          
BLAST of mRNA_H-elongata_contig83349.15973.1 vs. uniprot
Match: A0A6H5JPP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP1_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 6.260e-12
Identity = 53/132 (40.15%), Postives = 72/132 (54.55%), Query Frame = 0
Query:  103 DFAASSFSALLFSLLSVVLWATFCPVWG--FSATNGAEDARMALSVASAAGVVLTLLMPLLFLRARRQD-----HFVNNTIYLV----YGMEKVFVLYFLLSDAERLCAGSLGRAFAAFLILEISSICFVVV 223
            +FAA S ++ + SL+ ++ WATF PVWG  F+  +G ED R+ALS  S  GVV  L       RARR           +T+ +V    Y  +K F +  L S  ERLC+G LG+A    L +EI S+ F VV
Sbjct:    4 EFAALSLASTVVSLVPLLAWATFLPVWGEPFAEDDGDEDLRVALSAFSLTGVVAMLASAE---RARRSSPGSKRQRAMDTLVVVGVVSYATQKAFEVCVLASAWERLCSGVLGKALVVLLTVEILSVAFAVV 132          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83349.15973.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHE9_ECTSI2.030e-2738.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPP1_9PHAE6.260e-1240.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 175..192
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 142..163
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 193..203
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 228..230
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 26..108
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 131..141
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 204..227
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..25
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 109..130
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 164..174
NoneNo IPR availableTMHMMTMhelixcoord: 4..26
NoneNo IPR availableTMHMMTMhelixcoord: 141..163
NoneNo IPR availableTMHMMTMhelixcoord: 109..131
NoneNo IPR availableTMHMMTMhelixcoord: 170..192
NoneNo IPR availableTMHMMTMhelixcoord: 207..229

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83349contigH-elongata_contig83349:357..1049 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83349.15973.1mRNA_H-elongata_contig83349.15973.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig83349 285..2174 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig83349.15973.1 ID=prot_H-elongata_contig83349.15973.1|Name=mRNA_H-elongata_contig83349.15973.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=231bp
MEVYLQVFGMVGLVETAIAFAYALLNRDEFTHFEAMFFLVYGSLEVASEA
LFLGLSSITQCAEEKCCNCMIDGGGDLVEGMKAWAKDVFHNAVARDAVYG
VTDFAASSFSALLFSLLSVVLWATFCPVWGFSATNGAEDARMALSVASAA
GVVLTLLMPLLFLRARRQDHFVNNTIYLVYGMEKVFVLYFLLSDAERLCA
GSLGRAFAAFLILEISSICFVVVRALAGYL*
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