mRNA_H-elongata_contig83349.15973.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83349.15973.1
Unique NamemRNA_H-elongata_contig83349.15973.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig83349.15973.1 vs. uniprot
Match: D8LHE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE9_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.970e-25
Identity = 92/236 (38.98%), Postives = 119/236 (50.42%), Query Frame = 1 
Query:   73 MEVYLQVFGMVGLVETAIAFAYALLNRDEFTHFEAMFFLVYGSLEVASEALFLGLSSITQCAEEKCCNCMIDGGGDLVEGMKAWAKDVFHN--AVARDAVYGVTDFAASSFSALLFSLLSVVLWATFCPVWG--FSATNGAEDARMALSVASAAGVVLTLLMPLLFLRARRQD-----HFVNNTIYLV----YGMEKVFVLYFLLSDAERLCAGSLGRAFAAFLILEISSICFVVV 741
            MEV +QVFG  GLVET +  AY +     FT FE  +FL   S EVA E LFL  + I          C++    +     +A  KD  H+  AVA D+ Y   +FAA S ++ + SLL ++ WATF PVWG  F+   G E  R+ALS  S  GVV  L       RARR           +T+ +V    Y  +K F +  L S  ERLC G LG+A    L +EI S+ F VV
Sbjct:    1 MEVAVQVFGAAGLVETVVEVAYVVTTLRRFTTFEEWYFLASVSFEVAGELLFL-FAGI----------CLLSRNSNRRTTARALTKDPVHHVAAVATDSDYMSWEFAALSLASTVVSLLPLLAWATFLPVWGEPFAEDGGDEGLRVALSAFSLTGVVAMLASGE---RARRSSPGSKRQRAMDTLVVVGVVSYATQKAFEVCVLASAWERLCTGVLGKALVVLLTVEILSVAFAVV 222
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BLAST of mRNA_H-elongata_contig83349.15973.1 vs. uniprot
Match: A0A6H5JPP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP1_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.140e-11
Identity = 53/132 (40.15%), Postives = 72/132 (54.55%), Query Frame = 1 
Query:  379 DFAASSFSALLFSLLSVVLWATFCPVWG--FSATNGAEDARMALSVASAAGVVLTLLMPLLFLRARRQD-----HFVNNTIYLV----YGMEKVFVLYFLLSDAERLCAGSLGRAFAAFLILEISSICFVVV 741
            +FAA S ++ + SL+ ++ WATF PVWG  F+  +G ED R+ALS  S  GVV  L       RARR           +T+ +V    Y  +K F +  L S  ERLC+G LG+A    L +EI S+ F VV
Sbjct:    4 EFAALSLASTVVSLVPLLAWATFLPVWGEPFAEDDGDEDLRVALSAFSLTGVVAMLASAE---RARRSSPGSKRQRAMDTLVVVGVVSYATQKAFEVCVLASAWERLCSGVLGKALVVLLTVEILSVAFAVV 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83349.15973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHE9_ECTSI1.970e-2538.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPP1_9PHAE4.140e-1140.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83349contigH-elongata_contig83349:285..2174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size1623
Cds size693
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83349.15973.1prot_H-elongata_contig83349.15973.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83349 357..1049 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931240.7155757-UTR-H-elongata_contig83349:284..3561622931240.7155757-UTR-H-elongata_contig83349:284..356Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83349 285..356 +
1691679755.9078333-UTR-H-elongata_contig83349:284..3561691679755.9078333-UTR-H-elongata_contig83349:284..356Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83349 285..356 +
1622931240.7546036-UTR-H-elongata_contig83349:1049..10761622931240.7546036-UTR-H-elongata_contig83349:1049..1076Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83349 1050..1076 +
1691679755.9287455-UTR-H-elongata_contig83349:1049..10761691679755.9287455-UTR-H-elongata_contig83349:1049..1076Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83349 1050..1076 +
1622931240.7730765-UTR-H-elongata_contig83349:1148..15051622931240.7730765-UTR-H-elongata_contig83349:1148..1505Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83349 1149..1505 +
1691679755.9379623-UTR-H-elongata_contig83349:1148..15051691679755.9379623-UTR-H-elongata_contig83349:1148..1505Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83349 1149..1505 +
1622931240.7863066-UTR-H-elongata_contig83349:1700..21741622931240.7863066-UTR-H-elongata_contig83349:1700..2174Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83349 1701..2174 +
1691679755.9475975-UTR-H-elongata_contig83349:1700..21741691679755.9475975-UTR-H-elongata_contig83349:1700..2174Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83349 1701..2174 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931240.7333064-CDS-H-elongata_contig83349:356..10491622931240.7333064-CDS-H-elongata_contig83349:356..1049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83349 357..1049 +
1691679755.9164608-CDS-H-elongata_contig83349:356..10491691679755.9164608-CDS-H-elongata_contig83349:356..1049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83349 357..1049 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83349.15973.1

>prot_H-elongata_contig83349.15973.1 ID=prot_H-elongata_contig83349.15973.1|Name=mRNA_H-elongata_contig83349.15973.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=231bp
MEVYLQVFGMVGLVETAIAFAYALLNRDEFTHFEAMFFLVYGSLEVASEA
LFLGLSSITQCAEEKCCNCMIDGGGDLVEGMKAWAKDVFHNAVARDAVYG
VTDFAASSFSALLFSLLSVVLWATFCPVWGFSATNGAEDARMALSVASAA
GVVLTLLMPLLFLRARRQDHFVNNTIYLVYGMEKVFVLYFLLSDAERLCA
GSLGRAFAAFLILEISSICFVVVRALAGYL*
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mRNA from alignment at H-elongata_contig83349:285..2174+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83349.15973.1 ID=mRNA_H-elongata_contig83349.15973.1|Name=mRNA_H-elongata_contig83349.15973.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1890bp|location=Sequence derived from alignment at H-elongata_contig83349:285..2174+ (Himanthalia elongata Himel1 dioecious)
ACAGGTCGTGTAGCAAGGCAGAGGAAAAGTGGGTAGGAGAGACCCGGGCG
ATCTCGCCGGCTCGCCACAGTTATGGAGGTTTACCTCCAGGTGTTTGGGA
TGGTGGGCCTCGTGGAGACTGCCATTGCCTTTGCCTACGCCCTGTTGAAC
AGGGACGAGTTCACGCATTTTGAGGCGATGTTCTTCCTCGTCTACGGGTC
CCTGGAGGTGGCCTCGGAAGCCCTCTTCCTGGGCTTGTCGTCCATCACCC
AGTGCGCTGAGGAGAAGTGCTGCAACTGCATGATCGACGGGGGAGGGGAT
CTCGTCGAGGGGATGAAGGCCTGGGCCAAGGACGTGTTCCACAACGCGGT
CGCGCGGGACGCCGTGTACGGGGTGACCGACTTCGCCGCGTCTTCGTTCT
CCGCCCTCCTGTTCTCCCTCCTCTCCGTGGTGTTGTGGGCGACGTTCTGC
CCCGTCTGGGGGTTCTCCGCGACCAACGGAGCGGAGGACGCCAGGATGGC
CCTGTCCGTGGCCTCCGCGGCCGGTGTGGTGCTCACGCTGCTGATGCCGC
TGCTCTTCCTCCGCGCCCGGCGCCAGGACCACTTCGTGAACAACACGATC
TACCTGGTTTATGGCATGGAGAAGGTATTCGTGCTGTATTTCTTGCTGTC
GGACGCGGAGAGACTGTGCGCGGGGTCGCTTGGCAGGGCGTTTGCGGCTT
TCTTGATCCTCGAGATTTCGTCCATATGTTTTGTCGTGGTTCGGGCGCTC
GCGGGGTACCTCTGAGAGGTGGTGTAGGTATATAATATATATATATATAT
ATATATATACCATAGGGGTTTTTTAGGAGAGAGAGCTTTTGAAAATGTAT
GGCGGGGGGGAATAGGGGGGGGATAGCAATCGGGCTGCCCCCTTTCGTTG
AGTTAAAAATAACGACGCCTTCCAGGTTCATAATGCGCTAATAGGCGCAC
GCTGGTATATCCGAGTAGAGCGGCGTTTAATTAAAAAACCGGAACAACCT
TTTTAAATACGATTTGAGAAATTGTGTTTTATTTAATATGTGGAAACCCC
CGTCCCGAGGGGTAGGGAAAGATGGGATGGGAGGAGGGGGGGGGAGAGAG
CGTACAAAAGTTTCGAACTAATAATGGAGGTTATATGCTTGAAGTCAGAC
CATCCGGCAAGCCAGGGGGCTCTTGGACTTTGTCCGCTCGTGATTTGGTC
CCATTTGTTTAGTCGGGGTGATTGAAAAATAATCCTGAAGCATATTTTAT
CCCGTACAATTTTCCGTTTGTGGGGGGGGGGGGCGAGGAGTACGTTAAAA
TGACCCGCCAGTGAAAGAGAGGCTCCGNNNNNNNNNNTTTAGTGTGGTGA
ATTGAAAAAAATCCCTGAGACTTTTTTCATCCGGAAAAATTTCCCGTGTG
TGGGGGGGGGGGGGGCGAGGAGTACGTTAAAATGACCCGCCAGTGAAAGA
GAGGCTCCGAGAGCGAACGACTGCTGCACTACACGAATGATGGTATGACG
ACCCTTAGAGGACGGTGCAGAGATTTGCGCGAGACGTTTTTCCTAAGATG
AAGATGACGATGACGAGGACGATGACGGTACATGAGCTCCATAATATTTT
GATGATAGTGTCGACAACATTAATTACTGCACTACTGTATTATGAGGATA
TGAGAGAAAATGAACCTATGACGGAAGTGGGTTAATCTCAGCCGTGAGGG
ATTTTTCTTCGATGCTTCTCTCGGATATCTTGCGTTTTTGTTCGAAGTGG
CAGCAGTTTCTAGCCCAGCCTCCGTGCGGCGTGCATCCTCTTTCCTTTTA
TATTTCCCACCTTCCCCGAGGCAGGGTTTTTCGACATTTGGCCTCTCTTT
AATGCAGTCACCACCCCCACCCCCCACCCGGAAACACGCC
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Coding sequence (CDS) from alignment at H-elongata_contig83349:285..2174+

>mRNA_H-elongata_contig83349.15973.1 ID=mRNA_H-elongata_contig83349.15973.1|Name=mRNA_H-elongata_contig83349.15973.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1386bp|location=Sequence derived from alignment at H-elongata_contig83349:285..2174+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGTTTACCTCCAGGTGTTTGGGATGGTGGGCCTCGTGGAGACTGC
CATTGCCTTTGCCTACGCCCTGTTGAACAGGGACGAGTTCACGCATTTTG
AGGCGATGTTCTTCCTCGTCTACGGGTCCCTGGAGGTGGCCTCGGAAGCC
CTCTTCCTGGGCTTGTCGTCCATCACCCAGTGCGCTGAGGAGAAGTGCTG
CAACTGCATGATCGACGGGGGAGGGGATCTCGTCGAGGGGATGAAGGCCT
GGGCCAAGGACGTGTTCCACAACGCGGTCGCGCGGGACGCCGTGTACGGG
GTGACCGACTTCGCCGCGTCTTCGTTCTCCGCCCTCCTGTTCTCCCTCCT
CTCCGTGGTGTTGTGGGCGACGTTCTGCCCCGTCTGGGGGTTCTCCGCGA
CCAACGGAGCGGAGGACGCCAGGATGGCCCTGTCCGTGGCCTCCGCGGCC
GGTGTGGTGCTCACGCTGCTGATGCCGCTGCTCTTCCTCCGCGCCCGGCG
CCAGGACCACTTCGTGAACAACACGATCTACCTGGTTTATGGCATGGAGA
AGGTATTCGTGCTGTATTTCTTGCTGTCGGACGCGGAGAGACTGTGCGCG
GGGTCGCTTGGCAGGGCGTTTGCGGCTTTCTTGATCCTCGAGATTTCGTC
CATATGTTTTGTCGTGGTTCGGGCGCTCGCGGGGTACCTCTGAATGGAGG
TTTACCTCCAGGTGTTTGGGATGGTGGGCCTCGTGGAGACTGCCATTGCC
TTTGCCTACGCCCTGTTGAACAGGGACGAGTTCACGCATTTTGAGGCGAT
GTTCTTCCTCGTCTACGGGTCCCTGGAGGTGGCCTCGGAAGCCCTCTTCC
TGGGCTTGTCGTCCATCACCCAGTGCGCTGAGGAGAAGTGCTGCAACTGC
ATGATCGACGGGGGAGGGGATCTCGTCGAGGGGATGAAGGCCTGGGCCAA
GGACGTGTTCCACAACGCGGTCGCGCGGGACGCCGTGTACGGGGTGACCG
ACTTCGCCGCGTCTTCGTTCTCCGCCCTCCTGTTCTCCCTCCTCTCCGTG
GTGTTGTGGGCGACGTTCTGCCCCGTCTGGGGGTTCTCCGCGACCAACGG
AGCGGAGGACGCCAGGATGGCCCTGTCCGTGGCCTCCGCGGCCGGTGTGG
TGCTCACGCTGCTGATGCCGCTGCTCTTCCTCCGCGCCCGGCGCCAGGAC
CACTTCGTGAACAACACGATCTACCTGGTTTATGGCATGGAGAAGGTATT
CGTGCTGTATTTCTTGCTGTCGGACGCGGAGAGACTGTGCGCGGGGTCGC
TTGGCAGGGCGTTTGCGGCTTTCTTGATCCTCGAGATTTCGTCCATATGT
TTTGTCGTGGTTCGGGCGCTCGCGGGGTACCTCTGA
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