prot_H-elongata_contig83304.15970.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig83304.15970.1
Unique Nameprot_H-elongata_contig83304.15970.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length91
Homology
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BLAST of mRNA_H-elongata_contig83304.15970.1 vs. uniprot
Match: A0A6H5L0B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B1_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.570e-26
Identity = 52/72 (72.22%), Postives = 64/72 (88.89%), Query Frame = 0 
Query:   20 QVQKRWGFKAALVLIQEMRDADLDMTLVHYRSAVRACSLTRQLDGVLPLLDEMRAKGLVPDAATYNAALSSC 91
            +V+KRWGFKAAL LIQEMR+A+L+++LVHYR AV AC+LTRQL GVLPLLDEMR +G+  D ATY+AA+SSC
Sbjct:  315 KVRKRWGFKAALFLIQEMRNANLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADVATYDAAISSC 386
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BLAST of mRNA_H-elongata_contig83304.15970.1 vs. uniprot
Match: D7FY15_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY15_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 6.920e-20
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 0 
Query:   20 QVQKRWGFKAALVLIQEMRDADLDMTLVHYRSAVRACSLTRQLDGVLPLLDEMRAKGLVPD 80
            +V+KRWGFKA L LIQEMRD +L+++LVHYR AV AC+LTRQL GVLPLLDEMR +G+  D
Sbjct:   64 KVRKRWGFKAPLFLIQEMRDVNLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAAD 124
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BLAST of mRNA_H-elongata_contig83304.15970.1 vs. uniprot
Match: A0A835Z0N3_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0N3_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.110e-5
Identity = 26/72 (36.11%), Postives = 36/72 (50.00%), Query Frame = 0 
Query:   20 QVQKRWGFKAALVLIQEMRDADLDMTLVHYRSAVRACSLTRQLDGVLPLLDEMRAKGLVPDAATYNAALSSC 91
            +V KRWG++ A+ L+++M  A +   L H+RSAV ACS T+Q                 PD  T     SSC
Sbjct:   11 RVNKRWGWRRAMALVEDMEAAGVAARLEHFRSAVVACSKTKQXXXXXXXXXXXXXXXXXPDVQTMTXXXSSC 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83304.15970.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L0B1_9PHAE1.570e-2672.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY15_ECTSI6.920e-2070.49PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A835Z0N3_9STRA1.110e-536.11PPR_long domain-containing protein n=1 Tax=Tribone... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 5..91
e-value: 4.6E-13
score: 50.9
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 33..91
e-value: 5.1E-7
score: 29.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 49..81
e-value: 0.0013
score: 16.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 45..79
score: 8.944

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83304contigH-elongata_contig83304:2085..2357 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83304.15970.1mRNA_H-elongata_contig83304.15970.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig83304 2085..2363 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig83304.15970.1 ID=prot_H-elongata_contig83304.15970.1|Name=mRNA_H-elongata_contig83304.15970.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MQHLSTPPPSPSLHASLTHQVQKRWGFKAALVLIQEMRDADLDMTLVHYR
SAVRACSLTRQLDGVLPLLDEMRAKGLVPDAATYNAALSSC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat