mRNA_H-elongata_contig83304.15970.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83304.15970.1
Unique NamemRNA_H-elongata_contig83304.15970.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig83304.15970.1 vs. uniprot
Match: A0A6H5L0B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B1_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.700e-26
Identity = 52/72 (72.22%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:   64 QVQKRWGFKAALVLIQEMRDADLDMTLVHYRSAVRACSLTRQLDGVLPLLDEMRAKGLVPDAATYNAALSSC 279
            +V+KRWGFKAAL LIQEMR+A+L+++LVHYR AV AC+LTRQL GVLPLLDEMR +G+  D ATY+AA+SSC
Sbjct:  315 KVRKRWGFKAALFLIQEMRNANLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADVATYDAAISSC 386
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BLAST of mRNA_H-elongata_contig83304.15970.1 vs. uniprot
Match: D7FY15_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY15_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 7.490e-20
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:   64 QVQKRWGFKAALVLIQEMRDADLDMTLVHYRSAVRACSLTRQLDGVLPLLDEMRAKGLVPD 246
            +V+KRWGFKA L LIQEMRD +L+++LVHYR AV AC+LTRQL GVLPLLDEMR +G+  D
Sbjct:   64 KVRKRWGFKAPLFLIQEMRDVNLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAAD 124
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BLAST of mRNA_H-elongata_contig83304.15970.1 vs. uniprot
Match: A0A835Z0N3_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0N3_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.190e-5
Identity = 26/72 (36.11%), Postives = 36/72 (50.00%), Query Frame = 1 
Query:   64 QVQKRWGFKAALVLIQEMRDADLDMTLVHYRSAVRACSLTRQLDGVLPLLDEMRAKGLVPDAATYNAALSSC 279
            +V KRWG++ A+ L+++M  A +   L H+RSAV ACS T+Q                 PD  T     SSC
Sbjct:   11 RVNKRWGWRRAMALVEDMEAAGVAARLEHFRSAVVACSKTKQXXXXXXXXXXXXXXXXXPDVQTMTXXXSSC 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83304.15970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L0B1_9PHAE1.700e-2672.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY15_ECTSI7.490e-2070.49PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A835Z0N3_9STRA1.190e-536.11PPR_long domain-containing protein n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83304contigH-elongata_contig83304:2085..2363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue1.4e-17
Seed eggNOG ortholog2880.D7FY15
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-08_004690.1
Exons1
Model size279
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931240.5653062-CDS-H-elongata_contig83304:2084..23571622931240.5653062-CDS-H-elongata_contig83304:2084..2357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83304 2085..2357 -
1691679755.8516667-CDS-H-elongata_contig83304:2084..23571691679755.8516667-CDS-H-elongata_contig83304:2084..2357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83304 2085..2357 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931240.57817-UTR-H-elongata_contig83304:2357..23631622931240.57817-UTR-H-elongata_contig83304:2357..2363Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83304 2358..2363 -
1691679755.8620362-UTR-H-elongata_contig83304:2357..23631691679755.8620362-UTR-H-elongata_contig83304:2357..2363Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83304 2358..2363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83304.15970.1prot_H-elongata_contig83304.15970.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83304 2085..2357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83304.15970.1

>prot_H-elongata_contig83304.15970.1 ID=prot_H-elongata_contig83304.15970.1|Name=mRNA_H-elongata_contig83304.15970.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MQHLSTPPPSPSLHASLTHQVQKRWGFKAALVLIQEMRDADLDMTLVHYR
SAVRACSLTRQLDGVLPLLDEMRAKGLVPDAATYNAALSSC
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mRNA from alignment at H-elongata_contig83304:2085..2363-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83304.15970.1 ID=mRNA_H-elongata_contig83304.15970.1|Name=mRNA_H-elongata_contig83304.15970.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at H-elongata_contig83304:2085..2363- (Himanthalia elongata Himel1 dioecious)
TCAGACATGCAGCACTTGAGTACGCCACCCCCTTCCCCCTCCCTACACGC
CTCCCTAACCCACCAGGTTCAAAAACGGTGGGGCTTCAAGGCGGCCCTGG
TGCTCATCCAGGAGATGCGGGACGCCGACCTGGACATGACTCTCGTGCAC
TACCGTTCCGCGGTGAGGGCGTGCTCGCTCACCCGCCAGCTGGACGGAGT
GCTACCCCTCCTGGACGAGATGCGAGCCAAGGGCCTGGTTCCCGATGCGG
CCACCTACAACGCCGCCCTATCGTCGTGC
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Coding sequence (CDS) from alignment at H-elongata_contig83304:2085..2363-

>mRNA_H-elongata_contig83304.15970.1 ID=mRNA_H-elongata_contig83304.15970.1|Name=mRNA_H-elongata_contig83304.15970.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig83304:2085..2363- (Himanthalia elongata Himel1 dioecious)
ATGCAGCACTTGAGTACGCCACCCCCTTCCCCCTCCCTACACGCCTCCCT
AACCCACCAGGTTCAAAAACGGTGGGGCTTCAAGGCGGCCCTGGTGCTCA
TCCAGGAGATGCGGGACGCCGACCTGGACATGACTCTCGTGCACTACCGT
TCCGCGGTGAGGGCGTGCTCGCTCACCCGCCAGCTGGACGGAGTGCTACC
CCTCCTGGACGAGATGCGAGCCAAGGGCCTGGTTCCCGATGCGGCCACCT
ACAACGCCGCCCTATCGTCGTGCATGCAGCACTTGAGTACGCCACCCCCT
TCCCCCTCCCTACACGCCTCCCTAACCCACCAGGTTCAAAAACGGTGGGG
CTTCAAGGCGGCCCTGGTGCTCATCCAGGAGATGCGGGACGCCGACCTGG
ACATGACTCTCGTGCACTACCGTTCCGCGGTGAGGGCGTGCTCGCTCACC
CGCCAGCTGGACGGAGTGCTACCCCTCCTGGACGAGATGCGAGCCAAGGG
CCTGGTTCCCGATGCGGCCACCTACAACGCCGCCCTATCGTCGTGC
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