mRNA_H-elongata_contig8328.15967.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8328.15967.1
Unique NamemRNA_H-elongata_contig8328.15967.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8328.15967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8328contigH-elongata_contig8328:3163..4311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue2.1e-10
Seed eggNOG ortholog2880.D7FL89
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size613
Cds size609
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8328.15967.1prot_H-elongata_contig8328.15967.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8328 3163..4309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931240.2844703-CDS-H-elongata_contig8328:3162..33851622931240.2844703-CDS-H-elongata_contig8328:3162..3385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8328 3163..3385 +
1691679755.7590094-CDS-H-elongata_contig8328:3162..33851691679755.7590094-CDS-H-elongata_contig8328:3162..3385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8328 3163..3385 +
1622931240.3033793-CDS-H-elongata_contig8328:3418..35001622931240.3033793-CDS-H-elongata_contig8328:3418..3500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8328 3419..3500 +
1691679755.7681556-CDS-H-elongata_contig8328:3418..35001691679755.7681556-CDS-H-elongata_contig8328:3418..3500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8328 3419..3500 +
1622931240.328656-CDS-H-elongata_contig8328:4005..43091622931240.328656-CDS-H-elongata_contig8328:4005..4309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8328 4006..4309 +
1691679755.7758348-CDS-H-elongata_contig8328:4005..43091691679755.7758348-CDS-H-elongata_contig8328:4005..4309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8328 4006..4309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8328.15967.1

>prot_H-elongata_contig8328.15967.1 ID=prot_H-elongata_contig8328.15967.1|Name=mRNA_H-elongata_contig8328.15967.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=203bp
SSPTCDCENGLSDLQERLKKCGEGMRWLIPPSWRLALVVLDAVRDGIDPV
KAARHLMDKDPPPLVPSSKLCWVTLDSRELDLPLELIPNDPEFTLQSVIR
MRERAGSLLKHSEGVFLDVEDFALSLAPILNHKTQQNDSRGAAVFADLKL
DSQWLLRARMRLVSMGILEREFALSLWKKNGVLPEQTFDVLLKLGILLPL
PPR
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mRNA from alignment at H-elongata_contig8328:3163..4311+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8328.15967.1 ID=mRNA_H-elongata_contig8328.15967.1|Name=mRNA_H-elongata_contig8328.15967.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1149bp|location=Sequence derived from alignment at H-elongata_contig8328:3163..4311+ (Himanthalia elongata Himel1 dioecious)
TCATCGCCAACTTGTGACTGTGAGAATGGCTTGTCCGATCTCCAGGAGAG
GCTGAAGAAATGTGGAGAGGGTATGCGGTGGTTGATCCCGCCATCGTGGC
GTCTCGCTCTAGTGGTGCTGGATGCCGTGCGTGATGGAATCGACCCAGTG
AAAGCTGCTCGACACCTCATGGACAAGGACCCGCCCCCATTGGTACCGTC
GAGTAAATTATGTTGGGTAACCTTGGAGCGACTTTGGATCTCCTGGATGA
GCGTTCTGGATTCCCGCGAACTCGATCTTCCGCTGGAGCTCATACCCAAC
GACCCCGAGTTTACGCTACAGAGCGTCATCCGTATGAGGTAAGAGGATAG
ACATGATGTCACGTTATATTCTTATTTTTTGTGACGAACCGGCGAAGTCG
CACTTAGTTGTTTCCCATGTTTTATCCTGAAAACCGTGGATCACAAAAGC
GGCTAAGCCTAAAGCCATAGGCAAGCTCCCTCTCCTCGAGCCTCGTGTAC
AGCCGTGGTTACCTACTTTCACCATGCACTCTTCCGCTCTGCTCCCAACC
ACCCCAATCATCTGATGGTCTTAGAAACTCGCTACACGTGAGACATTTTT
TTCAATCAAGCTAGTTGTATATATGTTTTCGCGACTCCCGAAGAAGTCAT
TAATTAAATGGATATACTTGTTCGTGCCTAGAACGCATTTCATCTGCCGC
TCTATTTTATGTAGTTCTCAACAAATTTCGTCTATGATATCTTGTGGTCG
GGGTCACTGACTGGTGAAAACGTTTACTCTTATCGTTTCACCACCTCGTA
TTTTCTTGTCTCACAATGTCTTGATTGTTTTGCCACCCATCAGAGAACGT
GCTGGATCGCTTCTGAAGCACTCTGAAGGGGTTTTCTTGGATGTGGAAGA
TTTCGCTCTTTCTCTGGCTCCTATTCTTAACCATAAAACACAACAGAACG
ACTCTCGTGGTGCGGCCGTTTTCGCGGACCTTAAGCTCGACTCACAATGG
TTGTTGAGGGCCAGGATGCGATTAGTGAGCATGGGGATACTTGAAAGAGA
ATTCGCTCTGTCTTTGTGGAAGAAGAATGGCGTTTTGCCGGAGCAGACTT
TCGATGTACTTTTGAAGCTCGGGATTCTTCTACCCCTACCCCCAAGACA
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Coding sequence (CDS) from alignment at H-elongata_contig8328:3163..4311+

>mRNA_H-elongata_contig8328.15967.1 ID=mRNA_H-elongata_contig8328.15967.1|Name=mRNA_H-elongata_contig8328.15967.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1218bp|location=Sequence derived from alignment at H-elongata_contig8328:3163..4311+ (Himanthalia elongata Himel1 dioecious)
TCATCGCCAACTTGTGACTGTGAGAATGGCTTGTCCGATCTCCAGGAGAG
GCTGAAGAAATGTGGAGAGGGTATGCGGTGGTTGATCCCGCCATCGTGGC
GTCTCGCTCTAGTGGTGCTGGATGCCGTGCGTGATGGAATCGACCCAGTG
AAAGCTGCTCGACACCTCATGGACAAGGACCCGCCCCCATTGGTACCGTC
GAGTAAATTATGTTGGGTAACCTTCATCGCCAACTTGTGACTGTGAGAAT
GGCTTGTCCGATCTCCAGGAGAGGCTGAAGAAATGTGGAGAGGGTATGCG
GTGGTTGATCCCGCCATCGTGGCGTCTCGCTCTAGTGGTGCTGGATGCCG
TGCGTGATGGAATCGACCCAGTGAAAGCTGCTCGACACCTCATGGACAAG
GACCCGCCCCCATTGGTACCGTCGAGTAAATTATGTTGGGTAACCTTGGA
TTCCCGCGAACTCGATCTTCCGCTGGAGCTCATACCCAACGACCCCGAGT
TTACGCTACAGAGCGTCATCCGTATGAGTGGATTCCCGCGAACTCGATCT
TCCGCTGGAGCTCATACCCAACGACCCCGAGTTTACGCTACAGAGCGTCA
TCCGTATGAGAGAACGTGCTGGATCGCTTCTGAAGCACTCTGAAGGGGTT
TTCTTGGATGTGGAAGATTTCGCTCTTTCTCTGGCTCCTATTCTTAACCA
TAAAACACAACAGAACGACTCTCGTGGTGCGGCCGTTTTCGCGGACCTTA
AGCTCGACTCACAATGGTTGTTGAGGGCCAGGATGCGATTAGTGAGCATG
GGGATACTTGAAAGAGAATTCGCTCTGTCTTTGTGGAAGAAGAATGGCGT
TTTGCCGGAGCAGACTTTCGATGTACTTTTGAAGCTCGGGATTCTTCTAC
CCCTACCCCCAAGAAGAACGTGCTGGATCGCTTCTGAAGCACTCTGAAGG
GGTTTTCTTGGATGTGGAAGATTTCGCTCTTTCTCTGGCTCCTATTCTTA
ACCATAAAACACAACAGAACGACTCTCGTGGTGCGGCCGTTTTCGCGGAC
CTTAAGCTCGACTCACAATGGTTGTTGAGGGCCAGGATGCGATTAGTGAG
CATGGGGATACTTGAAAGAGAATTCGCTCTGTCTTTGTGGAAGAAGAATG
GCGTTTTGCCGGAGCAGACTTTCGATGTACTTTTGAAGCTCGGGATTCTT
CTACCCCTACCCCCAAGA
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