mRNA_H-elongata_contig832.15958.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig832.15958.1
Unique NamemRNA_H-elongata_contig832.15958.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig832.15958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig832contigH-elongata_contig832:1803..3442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1502
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig832.15958.1prot_H-elongata_contig832.15958.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig832 1937..2644 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931239.421726-UTR-H-elongata_contig832:1802..19361622931239.421726-UTR-H-elongata_contig832:1802..1936Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig832 1803..1936 +
1691679755.4372752-UTR-H-elongata_contig832:1802..19361691679755.4372752-UTR-H-elongata_contig832:1802..1936Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig832 1803..1936 +
1622931239.5238273-UTR-H-elongata_contig832:2644..34421622931239.5238273-UTR-H-elongata_contig832:2644..3442Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig832 2645..3442 +
1691679755.4800866-UTR-H-elongata_contig832:2644..34421691679755.4800866-UTR-H-elongata_contig832:2644..3442Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig832 2645..3442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931239.439455-CDS-H-elongata_contig832:1936..21701622931239.439455-CDS-H-elongata_contig832:1936..2170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig832 1937..2170 +
1691679755.4554994-CDS-H-elongata_contig832:1936..21701691679755.4554994-CDS-H-elongata_contig832:1936..2170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig832 1937..2170 +
1622931239.49727-CDS-H-elongata_contig832:2308..26441622931239.49727-CDS-H-elongata_contig832:2308..2644Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig832 2309..2644 +
1691679755.4698703-CDS-H-elongata_contig832:2308..26441691679755.4698703-CDS-H-elongata_contig832:2308..2644Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig832 2309..2644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig832.15958.1

>prot_H-elongata_contig832.15958.1 ID=prot_H-elongata_contig832.15958.1|Name=mRNA_H-elongata_contig832.15958.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp
MVKFRGGVRSVPHAYFVVTTRAILRGIANVDPEARVLILIFSEGPKGLQD
NQLNDERGRVVTWSIPPDCEVMGLRCTQEILLDSTLFHTFDCLATADVVL
GSESSMSEAAAAVSTNVKVMLWEGQEEQDRVTLRCDEIAAAGEVSRQDQV
ELNSAISNWFHCHRQARLSTGVDSASVYARRFYQTVDLS*
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mRNA from alignment at H-elongata_contig832:1803..3442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig832.15958.1 ID=mRNA_H-elongata_contig832.15958.1|Name=mRNA_H-elongata_contig832.15958.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1640bp|location=Sequence derived from alignment at H-elongata_contig832:1803..3442+ (Himanthalia elongata Himel1 dioecious)
ATTTATTCGCACCTCGTGTAACTAACGTGTCGGGAACATTGGCAAGTGAG
TTACATCTAGACAGCCAAGGCGACATTTCCCAGAAGAAGCAACGGCGACC
GTGGGTTATCGCGGTGCACGTTCGGAGGGGAGATATGGTCAAGTTCCGTG
GCGGAGTTCGAAGCGTTCCACACGCGTACTTCGTTGTCACCACTCGCGCA
ATTTTGCGAGGAATTGCTAATGTGGATCCTGAGGCCAGGGTTTTGATCTT
GATTTTTAGCGAGGGCCCGAAAGGGCTGCAAGATAATCAACTAAACGACG
AGAGGGGAAGGGTGGTCACTTGGAGCATTCCACCCGACTGCGAGGTGATG
GGGCTGCGTTGCACCCAGGTAAGCGTAATATGTGTGGTTGTATCTGAGTC
GGTTATTCGTTCACCTCGAGCAGAGTTAGTTGGATTTTTTCGAGTGGAGG
CACAACAAGGGATTGATATCCATTTGCGCCAAAATGTTTTATTTTGTTTG
AAGCAGGAAATTCTACTGGATTCAACACTGTTTCACACGTTCGACTGCTT
GGCGACCGCTGACGTGGTCTTGGGGAGTGAAAGCAGCATGTCGGAAGCTG
CTGCAGCTGTCTCAACTAACGTAAAGGTCATGCTGTGGGAAGGACAAGAA
GAACAAGACCGGGTAACCCTCAGATGTGATGAAATCGCGGCGGCTGGAGA
AGTCAGCCGCCAGGATCAGGTGGAGCTCAACTCGGCCATTAGCAATTGGT
TCCATTGTCATAGACAAGCTCGCCTTTCGACCGGTGTTGATAGTGCTAGT
GTTTACGCCCGTCGTTTCTATCAAACAGTCGACCTGAGTTAGCGGTGGTG
CGGATATTTCGGTCATAGTATATTCTTCGTTGCAGCTTAACTTGTACCCG
GTACACTTGATCGATGGACGACGCCATATTCAACGCCTAGGCATCTGAAT
ATTATATTTCTCGAGCTGCCTACAAAAATTGTGTCTGTGAAATATTGAGT
AGATGAAAGTAGTAGCGTATTCGAAGTCACAAACCAGCTTGTGCCGTACG
CGTACTCCTACTGTATGCTTGAAGATGTGATTACGGTGAACTTAGTCAAC
ATAATCACTTGTCCATGATGTAGTATTATCAAATATTTGTATACACCGTC
CGTTCTTCGGTGGGTGGCGTGACTAAGGCAGCGATATACACAGAAAGAGA
ATATAGCTCGCAGAGATAAAACGCATTGGGGGTGTAGCTCTCCTGTTATC
CAGAGTCCTGCGGTTAGCTTGGTGCCTTATCTGCACATTTGTAGTTCGTA
TAGGAAGAAAATATAATATCGTCGCGACAAGAGTGCGAGGTTCGCAGTTC
CCAGGAGGTTCTTCCTACGGCTTTGTCACGATTTCGAATTCCCGGTAGCG
TACATAGCTGAGTGACACCGAGATATGATCCGTTAACTTCTGTAACCCTT
TGAGTCTACGATCGGAATTGATTTTGGCAAGTCGATTACTAACTTATATG
TGTCGTCCCACCGTATTTCTTCAGCTGCAAGGTCAACACGAAAAAAATGT
GAGTCAGCAACAACAATTCCCCACAGTAATAAATTTAGAGAGAACCCATT
GATCATGGAGGCATAAAGTTTCTGTGATTTATCGTTTCGG
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Coding sequence (CDS) from alignment at H-elongata_contig832:1803..3442+

>mRNA_H-elongata_contig832.15958.1 ID=mRNA_H-elongata_contig832.15958.1|Name=mRNA_H-elongata_contig832.15958.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at H-elongata_contig832:1803..3442+ (Himanthalia elongata Himel1 dioecious)
ATGGTCAAGTTCCGTGGCGGAGTTCGAAGCGTTCCACACGCGTACTTCGT
TGTCACCACTCGCGCAATTTTGCGAGGAATTGCTAATGTGGATCCTGAGG
CCAGGGTTTTGATCTTGATTTTTAGCGAGGGCCCGAAAGGGCTGCAAGAT
AATCAACTAAACGACGAGAGGGGAAGGGTGGTCACTTGGAGCATTCCACC
CGACTGCGAGGTGATGGGGCTGCGTTGCACCCAGATGGTCAAGTTCCGTG
GCGGAGTTCGAAGCGTTCCACACGCGTACTTCGTTGTCACCACTCGCGCA
ATTTTGCGAGGAATTGCTAATGTGGATCCTGAGGCCAGGGTTTTGATCTT
GATTTTTAGCGAGGGCCCGAAAGGGCTGCAAGATAATCAACTAAACGACG
AGAGGGGAAGGGTGGTCACTTGGAGCATTCCACCCGACTGCGAGGTGATG
GGGCTGCGTTGCACCCAGGAAATTCTACTGGATTCAACACTGTTTCACAC
GTTCGACTGCTTGGCGACCGCTGACGTGGTCTTGGGGAGTGAAAGCAGCA
TGTCGGAAGCTGCTGCAGCTGTCTCAACTAACGTAAAGGTCATGCTGTGG
GAAGGACAAGAAGAACAAGACCGGGTAACCCTCAGATGTGATGAAATCGC
GGCGGCTGGAGAAGTCAGCCGCCAGGATCAGGTGGAGCTCAACTCGGCCA
TTAGCAATTGGTTCCATTGTCATAGACAAGCTCGCCTTTCGACCGGTGTT
GATAGTGCTAGTGTTTACGCCCGTCGTTTCTATCAAACAGTCGACCTGAG
TTAGGAAATTCTACTGGATTCAACACTGTTTCACACGTTCGACTGCTTGG
CGACCGCTGACGTGGTCTTGGGGAGTGAAAGCAGCATGTCGGAAGCTGCT
GCAGCTGTCTCAACTAACGTAAAGGTCATGCTGTGGGAAGGACAAGAAGA
ACAAGACCGGGTAACCCTCAGATGTGATGAAATCGCGGCGGCTGGAGAAG
TCAGCCGCCAGGATCAGGTGGAGCTCAACTCGGCCATTAGCAATTGGTTC
CATTGTCATAGACAAGCTCGCCTTTCGACCGGTGTTGATAGTGCTAGTGT
TTACGCCCGTCGTTTCTATCAAACAGTCGACCTGAGTTAG
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