prot_H-elongata_contig83171.15954.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig83171.15954.1
Unique Nameprot_H-elongata_contig83171.15954.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length48
Homology
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BLAST of mRNA_H-elongata_contig83171.15954.1 vs. uniprot
Match: D7FLU9_ECTSI (C6 transcription factor Prf n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU9_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.980e-7
Identity = 25/46 (54.35%), Postives = 29/46 (63.04%), Query Frame = 0 
Query:    3 KAKRRKACDSCTTRKIKCDGSQPSXXXXXXXXGECKYSTRLKSGPK 48
            KAK RKACD CT RK +CD  +P+          C+YS RLKSGPK
Sbjct:  194 KAKPRKACDVCTARKTRCDSVRPTCGTCAAQFATCRYSARLKSGPK 239
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83171.15954.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLU9_ECTSI2.980e-754.35C6 transcription factor Prf n=1 Tax=Ectocarpus sil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001138Zn(2)-C6 fungal-type DNA-binding domainSMARTSM00066gal4_2coord: 4..48
e-value: 4.1E-8
score: 43.0
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPFAMPF00172Zn_cluscoord: 8..44
e-value: 6.3E-9
score: 35.8
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS00463ZN2_CY6_FUNGAL_1coord: 9..37
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS50048ZN2_CY6_FUNGAL_2coord: 9..39
score: 10.612
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilyGENE3D4.10.240.10coord: 2..48
e-value: 5.3E-11
score: 44.3
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilySUPERFAMILY57701Zn2/Cys6 DNA-binding domaincoord: 4..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83171contigH-elongata_contig83171:2135..2278 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83171.15954.1mRNA_H-elongata_contig83171.15954.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig83171 2135..2278 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig83171.15954.1 ID=prot_H-elongata_contig83171.15954.1|Name=mRNA_H-elongata_contig83171.15954.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
PQKAKRRKACDSCTTRKIKCDGSQPSCRACTARKGECKYSTRLKSGPK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
IPR036864Zn2-C6_fun-type_DNA-bd_sf