mRNA_H-elongata_contig83171.15954.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83171.15954.1
Unique NamemRNA_H-elongata_contig83171.15954.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig83171.15954.1 vs. uniprot
Match: D7FLU9_ECTSI (C6 transcription factor Prf n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU9_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.980e-7
Identity = 25/46 (54.35%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:    7 KAKRRKACDSCTTRKIKCDGSQPSXXXXXXXXGECKYSTRLKSGPK 144
            KAK RKACD CT RK +CD  +P+          C+YS RLKSGPK
Sbjct:  194 KAKPRKACDVCTARKTRCDSVRPTCGTCAAQFATCRYSARLKSGPK 239
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83171.15954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLU9_ECTSI2.980e-754.35C6 transcription factor Prf n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83171contigH-elongata_contig83171:2135..2278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931238.8264313-CDS-H-elongata_contig83171:2134..22781622931238.8264313-CDS-H-elongata_contig83171:2134..2278Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83171 2135..2278 +
1691679755.0492885-CDS-H-elongata_contig83171:2134..22781691679755.0492885-CDS-H-elongata_contig83171:2134..2278Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83171 2135..2278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83171.15954.1prot_H-elongata_contig83171.15954.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83171 2135..2278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83171.15954.1

>prot_H-elongata_contig83171.15954.1 ID=prot_H-elongata_contig83171.15954.1|Name=mRNA_H-elongata_contig83171.15954.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
PQKAKRRKACDSCTTRKIKCDGSQPSCRACTARKGECKYSTRLKSGPK
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mRNA from alignment at H-elongata_contig83171:2135..2278+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83171.15954.1 ID=mRNA_H-elongata_contig83171.15954.1|Name=mRNA_H-elongata_contig83171.15954.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig83171:2135..2278+ (Himanthalia elongata Himel1 dioecious)
CCTCAGAAAGCCAAGCGACGAAAGGCATGTGACTCGTGCACGACAAGGAA
GATCAAGTGCGACGGCTCGCAGCCATCCTGTAGGGCGTGCACGGCGAGGA
AAGGGGAGTGCAAATACAGCACTCGCCTCAAGTCCGGCCCCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig83171:2135..2278+

>mRNA_H-elongata_contig83171.15954.1 ID=mRNA_H-elongata_contig83171.15954.1|Name=mRNA_H-elongata_contig83171.15954.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig83171:2135..2278+ (Himanthalia elongata Himel1 dioecious)
CCTCAGAAAGCCAAGCGACGAAAGGCATGTGACTCGTGCACGACAAGGAA
GATCAAGTGCGACGGCTCGCAGCCATCCTGTAGGGCGTGCACGGCGAGGA
AAGGGGAGTGCAAATACAGCACTCGCCTCAAGTCCGGCCCCAAGCCTCAG
AAAGCCAAGCGACGAAAGGCATGTGACTCGTGCACGACAAGGAAGATCAA
GTGCGACGGCTCGCAGCCATCCTGTAGGGCGTGCACGGCGAGGAAAGGGG
AGTGCAAATACAGCACTCGCCTCAAGTCCGGCCCCAAG
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