mRNA_H-elongata_contig8311.15947.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8311.15947.1
Unique NamemRNA_H-elongata_contig8311.15947.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig8311.15947.1 vs. uniprot
Match: D7FT40_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT40_ECTSI)

HSP 1 Score: 330 bits (847), Expect = 2.370e-101
Identity = 169/212 (79.72%), Postives = 182/212 (85.85%), Query Frame = 3 
Query: 1002 GGSDRTKTSSGYNAGLQSGKDFKVVEQRLRQKHESEMKAMDKTYSGQGAETVYRDKKGNKVDMLTEFKKQQKTNAEKKVEEAKDQFAWGRGKVQKEVEKQWKEELDNIAAEPFARSVGDARLEEMRKAEIRPDDPMAAYIAKKKSKANAKSGKPAKPEYKGPAPKPNRFAIRPGYRWDGVDRGNGWEDKIVAKGMDNQYKADLAYKWATADM 1637
            GG  R KTSSGY AGLQSGKDFKVVEQ L++KH++EMK  DK+ SGQGAETVYRDKKG K+DML EF K Q   A KKVEEAKDQFAWGRGKVQKE EKQWKEEL+NIAAEPFAR+V D RLEE RKAEIR DDPMAAY+AKKK+K   KSGKP KPEYKGP PKPNRF IRPGYRWDG DRGNGWE +IVAKG+DN YKA+LAYKWATADM
Sbjct:  418 GGDGRVKTSSGYYAGLQSGKDFKVVEQNLKRKHDAEMKGADKSSSGQGAETVYRDKKGRKLDMLNEFMKSQDARAGKKVEEAKDQFAWGRGKVQKEEEKQWKEELENIAAEPFARTVDDTRLEEARKAEIRADDPMAAYMAKKKAKEGVKSGKPLKPEYKGPQPKPNRFGIRPGYRWDGNDRGNGWESRIVAKGVDNNYKAELAYKWATADM 629
[Close]
BLAST of mRNA_H-elongata_contig8311.15947.1 vs. uniprot
Match: A0A6H5KM91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM91_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 5.340e-73
Identity = 241/612 (39.38%), Postives = 269/612 (43.95%), Query Frame = 3 
Query:   96 LRIIDDGEDTVVPDRKQVEKAWEDEEAEEEKPTLVVGELEEGKRVQSGSWTTVG------GLDASEDDTSPPRR-RMRHDSXXXXXXXXXXNENSGSAGCGDAXXXRRPRPNGRRNSARSSLLPDASPPRKRPMASGDDKRSSGTAGGRNKLSQDGSVRGDGT-----------------------------------------------------------------------------------------------DSSPPRRASRAENGRGTRRRWDSAEGVNERDASPPRX-KRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRRRRHDSSXXXXPDDAATRGARDASPPRRSMKASGREXXXXXXXXXXXXXXNGDRAADEKGR--------------------------------WRDPPGQGEKVGGGSDRTKTSSGYNAGLQSGKDFKVVEQRLRQKHESEMKAMDKTYSGQGAETVYRDKKGNKVDMLTEFKKQQKTNAEKKVEEAKDQFAWGRGKVQKEVEKQWKEELDNIAAEPFARSVGDARLEEMRKAEIRPDDPMAAYIAKKKSKANAKSGKPAKPEYKGPAPKPNRFAIRPGY 1526
            LRIIDD       DRK+V KAWE+EE EEEKP LV+ + + G + QSGSWTTVG      G     +D SPPRR R RHDS                 GC                        DASPPR+ P             GGR     DG                                                                                                      D+SP RR +        RR+  + E     DASPPR   R     XXXXXXXXXXXX               R   RH  S     ++    G  DASPPRR+ +A  R                G  AA  +GR                                  D P +  K GG   R KTSSGY AGLQSGKDFKVVEQ L++KH++EMK  DK  SGQGAETVYRDKKG K+DML EF K Q   A KKVEEAKDQFAWGRGKVQKE EKQWKEEL+NIAAEPFAR+V D RLEE RKAEIR DDPMAAY+AKKK+K   KSGKP KPEYKGP PKPNR    P +
Sbjct:   49 LRIIDDEAGMTTLDRKRVNKAWEEEETEEEKPALVLDDPDVGVKAQSGSWTTVGVGATGNGGGTDREDMSPPRRQRKRHDSSDD--------------GC------------------------DASPPRRNPRNG---------RGGRTDPGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDASPLRRKNPVAAAAAGRRKRSTREAE---DASPPRRPSRGGESLXXXXXXXXXXXXGGDRGRRDAGYRSEGRNEHRHGGSGRRSREENIKDG--DASPPRRTRRAGERHDSSSGSDGSVPRERAG-AAAGWRGRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSPEEDVKAGG-DGRVKTSSGYYAGLQSGKDFKVVEQNLKRKHDAEMKGADKRSSGQGAETVYRDKKGRKLDMLNEFMKSQDARAGKKVEEAKDQFAWGRGKVQKEEEKQWKEELENIAAEPFARTVDDTRLEEARKAEIRADDPMAAYMAKKKAKERVKSGKPLKPEYKGPQPKPNRHVWHPAW 606
[Close]
BLAST of mRNA_H-elongata_contig8311.15947.1 vs. uniprot
Match: A0A7S2BP57_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BP57_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.420e-51
Identity = 97/179 (54.19%), Postives = 122/179 (68.16%), Query Frame = 3 
Query: 1107 EMKAMDKTYSGQGAETVYRDKKGNKVDMLTEFKKQQKTNAEKKVEEAKDQFAWGRGKVQKEVEKQWKEELDNIAAEPFARSVGDARLEEMRKAEIRPDDPMAAYIAKKKSK--ANAKSGKPAKPEYKGPAPKPNRFAIRPGYRWDGVDRGNGWEDKIVAKGMDNQYKADLAYKWATADM 1637
            + K  DK+   +  ET+YRDKKG K+DML EF +QQ     K+VEE  +Q  WG+G VQK+ EK  +EEL NIA EPFAR+V D +++ M + +I  DDPMAAY+ KK+ K     K+GKPAKP YKGP PKPNRF I PGYRWDGVDRG GWEDK+ A   +        Y+W+T+DM
Sbjct:   10 QQKEADKSLGDKQEETIYRDKKGRKLDMLNEFMRQQAIREGKEVEEKAEQEEWGKGTVQKQEEKAHQEELANIANEPFARTVNDPKVDAMYREKIHADDPMAAYMMKKREKEGVKGKNGKPAKPFYKGPKPKPNRFGIPPGYRWDGVDRGTGWEDKVYAYQANKGVNKQAEYEWSTSDM 188
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BLAST of mRNA_H-elongata_contig8311.15947.1 vs. uniprot
Match: A0A835ZAF7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAF7_9STRA)

HSP 1 Score: 178 bits (451), Expect = 3.770e-49
Identity = 92/167 (55.09%), Postives = 122/167 (73.05%), Query Frame = 3 
Query: 1137 GQGAETVYRDKKGNKVDMLTEFKKQQKTNAEKKVEEAKDQFAWGRGKVQKEVEKQWKEELDNIAAEPFARSVGDARLEEMRKAEIRPDDPMAAYIAKKKSKANAKSGKPAKPEYKGPAPKPNRFAIRPGYRWDGVDRGNGWEDKIVAKGMDNQYKADLAYKWATADM 1637
            GQ AETVYRD++G K+DML+EF +QQ        E+A  ++ WGRGKVQKE +++ ++EL+NI   PFAR+     L+E  KA++R DDPMAAY+AKK++K  A SGKP KP YKGP PKPNRF I PGYRWDGVDRG+GWE K+V   +  ++K + +Y++  ADM
Sbjct:    1 GQTAETVYRDRRGRKLDMLSEFMRQQDAREGAVREKADAEYEWGRGKVQKEDKERQRDELENIKLAPFARTA--EHLDEELKAQLRSDDPMAAYMAKKQAKTAAASGKPLKPVYKGPPPKPNRFGILPGYRWDGVDRGSGWEQKLVDAQLARRHKGEASYQYGCADM 165
[Close]
BLAST of mRNA_H-elongata_contig8311.15947.1 vs. uniprot
Match: A0A7R9U1Z5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1Z5_9STRA)

HSP 1 Score: 174 bits (442), Expect = 3.400e-47
Identity = 94/185 (50.81%), Postives = 127/185 (68.65%), Query Frame = 3 
Query: 1026 SSGYNAGLQSGKDFKVVEQRLRQKHESEMKAMDKTYSGQGAETVYRDKKGNKVDMLTEFKKQQKTNAEKKVEEAKDQFAWGRGKVQKEVEKQWKEELDNIAAEPFARSVGDARLEEMRKAEIRPDDPMAAYIAKKKSKANAKSGKPAKPEYKGPAPKPNRFAIRPGYRWDGVDRGNGWEDKIVAK 1580
            SSG+ AGL +   FK  E  LR+   +++  M    SG+ +ETVYRD++G K+DML+EF +QQ+    K+       + WG+G  QK++EK+++EEL+NI  EPFAR+  D RLE MRK E+RPDDPM AY+ K++    AK+GK  K  Y GP P PNRF I PGYRWDGVDRGNG+E +++AK
Sbjct:   27 SSGHRAGLHTADSFKRAEDELRRDKAAKLSRMSDELSGKNSETVYRDRQGRKLDMLSEFMRQQEEKESKRXXXX-XXYEWGKGTKQKKMEKEYEEELENIRNEPFARAHDDPRLERMRKEELRPDDPMLAYVQKQR----AKTGKSTKKAYTGPPPPPNRFGIPPGYRWDGVDRGNGFEARVLAK 206
[Close]
BLAST of mRNA_H-elongata_contig8311.15947.1 vs. uniprot
Match: A0A7S1GEN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GEN6_9STRA)

HSP 1 Score: 166 bits (419), Expect = 4.170e-44
Identity = 93/199 (46.73%), Postives = 125/199 (62.81%), Query Frame = 3 
Query: 1020 KTSSGYNAGLQSGKDFKVVEQRLRQKHESEMKAMDKTYSGQGAETVYRDKKGNKVDMLTEFKKQQKTNAEKKVEEAKDQFAWGRGKVQKEVEKQWKEELDNIAAEPFARSVGDARLEEMRKAEIRPDDPMAAYIAKKKSKANAKSGKPA-KPEYKGPAPKPNRFAIRPGYRWDGVDRGNGWEDKIVAKGMDNQYKADLA 1613
            + ++G  AGL  G+D K  +  LR++   ++ AMD    GQGAETVYRD+KG K+DML E  +QQ     KKV +  + F WG G VQK   +   EE+  IA  PFAR+  D  + +  K++IR  DPMAA + +K+ +  AK G P  KP+Y+GPAP PNR+ I PGYRWDGVDRGNGWE K++A       +A+ A
Sbjct:    1 RMATGERAGLLKGEDMKAEQLALRRREREKLAAMDAEMMGQGAETVYRDRKGRKLDMLQEMMRQQDLAKGKKVAKEAEAFDWGTGAVQKREVEARAEEMAKIAEAPFARTADDKDMNDYLKSQIREGDPMAAAMMRKQRERAAKEGGPGGKPQYRGPAPPPNRYGIAPGYRWDGVDRGNGWERKLLAYKAGKAARAEKA 199
[Close]
BLAST of mRNA_H-elongata_contig8311.15947.1 vs. uniprot
Match: A0A8J2X1F7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X1F7_9STRA)

HSP 1 Score: 169 bits (427), Expect = 4.770e-42
Identity = 95/208 (45.67%), Postives = 127/208 (61.06%), Query Frame = 3 
Query: 1020 KTSSGYNAGLQSGKDFKVVEQRLRQKHESEMKAMDKTYSGQGAETVYRDKKGNKVDMLTEFKKQQKTNAEKKVEEAKDQFAWGRGKVQKEVEKQWKEELDNIAAEPFARSVGDARLEEMRKAEIRPDDPMAAYIAKKKSKANAKS--GKPAKPEYKGPAPKPNRFAIRPGYRWDGVDRGNGWEDKIVAKGMDNQYKADLAYKWATADM 1637
            K + G++AG+ SG +FK  E +LR++   E  AMD + SG  A TVYRD++  K   L +   + +   EKK +EA++QF WGRG  QKE E   + EL  +A EPFAR   D +LE+MR+  IR  DPMA YI + +++   K+   +  +P YKGP P PNRF IRPGYRWDGVDRGNGWE K+           +  Y W+ ADM
Sbjct:  295 KMADGHSAGVLSGAEFKAAETKLREERRREAAAMDPSESGAHAATVYRDRRTGKAINLADEAARIEAEREKKAQEAREQFEWGRGTKQKEAEADARAELKAVANEPFARRADDPKLEKMRRDVIRDGDPMADYIRQSRAQEEEKATPAESRRPVYKGPPPPPNRFGIRPGYRWDGVDRGNGWEQKLQNHAAQQVGLRNDRYAWSCADM 502
[Close]
BLAST of mRNA_H-elongata_contig8311.15947.1 vs. uniprot
Match: W7TD64_9STRA (Bud13 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TD64_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.570e-41
Identity = 97/216 (44.91%), Postives = 136/216 (62.96%), Query Frame = 3 
Query: 1008 SDRTKTSSGYNAGLQSGKDFK--VVEQRLRQKHESEMKAMDKTYSGQGAETVYRDKKGNKVDMLTEFKKQQKTNAEKKVEEAKDQFAWGRGKVQKEVEKQWKEELDNIAAEPFARSVGDARLEEMRKAEIRPDDPMAAYIAKKKSKANA----KSGKPAKPEYKGPAPKPNRFAIRPGYRWDGVDRGNGWEDKIVAKGMDNQYKADLAYKWATADM 1637
            S +T ++     GL++G +F+  +  Q+  + H     A D   +GQ AETV RD++G K++ML+EF  Q+     K  +EAK+++ WGRGKVQKE ++  + EL++I   PFAR   D +LE  RK EIR DDPMAAY+ +K+  A A    +SGK  KPEYKGP PKPNRF IRPGYRWDG+DRGNG+E +   +  +   K +    W  +D+
Sbjct:  156 SGKTASTRPKEDGLKTGAEFRAELEAQKDAEAHAWAEGAKDAGVTGQHAETVVRDRRGRKLEMLSEFLNQEAYKEGKAAKEAKEEYEWGRGKVQKEKDEDHRRELEDIKNAPFARYESDLKLERARKEEIRADDPMAAYMLQKQRDALAQEATRSGKVLKPEYKGPPPKPNRFNIRPGYRWDGIDRGNGFEARWFKRQSELVTKHERDRAWGMSDL 371
[Close]
BLAST of mRNA_H-elongata_contig8311.15947.1 vs. uniprot
Match: A0A7S4D5S3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5S3_HETAK)

HSP 1 Score: 161 bits (407), Expect = 3.750e-41
Identity = 92/209 (44.02%), Postives = 125/209 (59.81%), Query Frame = 3 
Query: 1014 RTKTSSGYNAGLQSGKDFKVVEQRLRQKHESEMKAMDKTYSGQGAETVYRDKKGNKVDMLTEFKKQQKTNAEKKVEEAKDQFAWGRGKVQKEVEKQWKEELDNIAAEPFARSVGDARLEEMRKAEIRPDDPMAAY-IAKKKSKANAKSGKPAKPEYKGPAPKPNRFAIRPGYRWDGVDRGNGWEDKIVAKGMDNQYKADLAYKWATADM 1637
            R K SSG+ +GLQSG +FK +EQ++R    +E+   D+  SG+ A TVYRDK+G K+DMLT+F +QQ+    KK  E ++QF WGRG VQK  E+ ++EEL  I A+PFAR   D +L +  K EI  DDPMAAY +                          NR+ +RPGYRWDG DRGNG+E +++ K  D Q   +  Y W+ +DM
Sbjct:   93 RQKMSSGHASGLQSGAEFKEIEQQVRAARAAELAGADEEVSGRNAGTVYRDKRGRKLDMLTQFMEQQEAKDGKKKREEQEQFEWGRGAVQKRRERDFQEELREIQAQPFARYRDDEKLNQAAKEEIHADDPMAAYMLXXXXXXXXXXXXXXXXXXXXXXXXXXNRYGLRPGYRWDGHDRGNGFEARVLGKAADRQVFNERKYNWSVSDM 301
[Close]
BLAST of mRNA_H-elongata_contig8311.15947.1 vs. uniprot
Match: A0A7S2HC66_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HC66_9STRA)

HSP 1 Score: 156 bits (395), Expect = 8.630e-41
Identity = 80/166 (48.19%), Postives = 112/166 (67.47%), Query Frame = 3 
Query: 1152 TVYRDKKGNKVDMLTEFKKQQKTNAEKKVEEAKDQFAWGRGKVQKEVEKQWKEELDNIAAEPFARSVGDARLEEMRKAEIRPDDPMAAYIAKKKS----KANAKSGKPAKPEYKGPAPKPNRFAIRPGYRWDGVDRGNGWEDKIVAKGMDNQYKADLAYKWATADM 1637
            T+ RD++G K+D L EF K Q  +A +K  + ++Q  WG+G VQK  +K+++ EL NI  EPFARS  D ++++M + +I  DDPMAAY+ KK++    K +  +GKPA+P YKGP PKPNRF I PGYRWDG DRG GWE KI+     +    + AY+W+ A+M
Sbjct:   27 TIVRDRRGKKLDALNEFMKAQAKSAGEKAADDEEQLEWGKGSVQKNQDKEYEAELANIKNEPFARSRNDPKVDQMYRNKIHSDDPMAAYMLKKRAAEADKLSKHAGKPARPVYKGPTPKPNRFNIHPGYRWDGRDRGTGWEAKILDHAAHSGVMKNAAYEWSVAEM 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8311.15947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT40_ECTSI2.370e-10179.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM91_9PHAE5.340e-7339.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2BP57_9STRA1.420e-5154.19Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835ZAF7_9STRA3.770e-4955.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9U1Z5_9STRA3.400e-4750.81Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1GEN6_9STRA4.170e-4446.73Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A8J2X1F7_9STRA4.770e-4245.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
W7TD64_9STRA1.570e-4144.91Bud13 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W... [more]
A0A7S4D5S3_HETAK3.750e-4144.02Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2HC66_9STRA8.630e-4148.19Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8311contigH-elongata_contig8311:717..4912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.0
Seed ortholog evalue1.5e-89
Seed eggNOG ortholog2880.D7FT40
KEGG koko:K13100,ko:K13106
EggNOG free text desc.RNA splicing
EggNOG OGsKOG2654@1,KOG2654@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBud13
Ec32 orthologEc-04_002730.1
Exons6
Model size1880
Cds size1566
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8311.15947.1prot_H-elongata_contig8311.15947.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8311 791..4672 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931238.1860418-UTR-H-elongata_contig8311:716..7901622931238.1860418-UTR-H-elongata_contig8311:716..790Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8311 717..790 +
1691679754.7863314-UTR-H-elongata_contig8311:716..7901691679754.7863314-UTR-H-elongata_contig8311:716..790Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8311 717..790 +
1622931238.3079631-UTR-H-elongata_contig8311:4672..49121622931238.3079631-UTR-H-elongata_contig8311:4672..4912Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8311 4673..4912 +
1691679754.8677464-UTR-H-elongata_contig8311:4672..49121691679754.8677464-UTR-H-elongata_contig8311:4672..4912Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8311 4673..4912 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931238.2043831-CDS-H-elongata_contig8311:790..8961622931238.2043831-CDS-H-elongata_contig8311:790..896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8311 791..896 +
1691679754.8057892-CDS-H-elongata_contig8311:790..8961691679754.8057892-CDS-H-elongata_contig8311:790..896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8311 791..896 +
1622931238.2208176-CDS-H-elongata_contig8311:1452..23721622931238.2208176-CDS-H-elongata_contig8311:1452..2372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8311 1453..2372 +
1691679754.815695-CDS-H-elongata_contig8311:1452..23721691679754.815695-CDS-H-elongata_contig8311:1452..2372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8311 1453..2372 +
1622931238.2361684-CDS-H-elongata_contig8311:2665..28001622931238.2361684-CDS-H-elongata_contig8311:2665..2800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8311 2666..2800 +
1691679754.8253925-CDS-H-elongata_contig8311:2665..28001691679754.8253925-CDS-H-elongata_contig8311:2665..2800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8311 2666..2800 +
1622931238.2539387-CDS-H-elongata_contig8311:3271..34631622931238.2539387-CDS-H-elongata_contig8311:3271..3463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8311 3272..3463 +
1691679754.835173-CDS-H-elongata_contig8311:3271..34631691679754.835173-CDS-H-elongata_contig8311:3271..3463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8311 3272..3463 +
1622931238.2692976-CDS-H-elongata_contig8311:3816..38931622931238.2692976-CDS-H-elongata_contig8311:3816..3893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8311 3817..3893 +
1691679754.8450325-CDS-H-elongata_contig8311:3816..38931691679754.8450325-CDS-H-elongata_contig8311:3816..3893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8311 3817..3893 +
1622931238.2874575-CDS-H-elongata_contig8311:4536..46721622931238.2874575-CDS-H-elongata_contig8311:4536..4672Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8311 4537..4672 +
1691679754.8548841-CDS-H-elongata_contig8311:4536..46721691679754.8548841-CDS-H-elongata_contig8311:4536..4672Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8311 4537..4672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8311.15947.1

>prot_H-elongata_contig8311.15947.1 ID=prot_H-elongata_contig8311.15947.1|Name=mRNA_H-elongata_contig8311.15947.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=522bp
MSRGGGGLRIIDDGEDTVVPDRKQVEKAWEDEEAEEEKPTLVVGELEEGK
RVQSGSWTTVGGLDASEDDTSPPRRRMRHDSSDEDASPPRRNENSGSAGC
GDASPPRRPRPNGRRNSARSSLLPDASPPRKRPMASGDDKRSSGTAGGRN
KLSQDGSVRGDGTDSSPPRRASRAENGRGTRRRWDSAEGVNERDASPPRR
KRSSPGGRDGRDVSPPRRVRDGAEGADEHDTSPPRRRRRHDSSDDDDPDD
AATRGARDASPPRRSMKASGRESDASPPRRRRQQEDNGDRAADEKGRWRD
PPGQGEKVGGGSDRTKTSSGYNAGLQSGKDFKVVEQRLRQKHESEMKAMD
KTYSGQGAETVYRDKKGNKVDMLTEFKKQQKTNAEKKVEEAKDQFAWGRG
KVQKEVEKQWKEELDNIAAEPFARSVGDARLEEMRKAEIRPDDPMAAYIA
KKKSKANAKSGKPAKPEYKGPAPKPNRFAIRPGYRWDGVDRGNGWEDKIV
AKGMDNQYKADLAYKWATADM*
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mRNA from alignment at H-elongata_contig8311:717..4912+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8311.15947.1 ID=mRNA_H-elongata_contig8311.15947.1|Name=mRNA_H-elongata_contig8311.15947.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4196bp|location=Sequence derived from alignment at H-elongata_contig8311:717..4912+ (Himanthalia elongata Himel1 dioecious)
CAGATGACGGCGACGGGGACAAAAAGAAAAGACGAAGGAAAAAGAACCAA
GGGTCTTCTAGAGGCAGCTCGGGAATGTCACGCGGCGGGGGTGGTCTGCG
CATTATCGATGATGGAGAGGACACGGTCGTGCCAGACAGAAAACAGGTCG
AAAAAGCGTGGGAAGACGAAGAAGCCGAAGGTAAGAGGGGGGGGGAGAGC
GGGGGGCTAATTCTTTTTTTTTTTTACGTATCTGGCGAAGGCAAAACTGC
CATAGTNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT
GAGGAGAGGGGGAGGGGGGAGGGGGGGGGGGGGGGGAAGGAGAAGAGGGG
GGGGGGCTAATTCTTTTTTTTTTTTACGTATCTGGCGAAGGCAAAACTGC
CATAGTTATAACTCTAACCTTCCTTACGAACGAACTCGTACCCCTTTTGA
AGATAAATCGGTGAAATATGTCAAATGTGGGTGTGTCGTGATTGTTTGCG
TTGATCGACGCGCGGTACGCAAGGTGTAGACCTTAAGATCAATAGTTGGA
CGCCACCCAGCTTTTAGGTACAGCTGGGCGGGGACTTGTTGAGTGCCAAT
CCTTCCCACGTCATATTTTCTCTCACACTGGTCATCGTAAGTCGCTTCCA
CTCTTGATTCCTGAATCTGCTTACCCAGGAACCATCTGCAATACGTATTT
CTGCTCGCTCCCCGAACTCCACTCGGAACCCCCCAGAAGAAAAGCCTACC
CTGGTTGTAGGAGAGCTTGAGGAGGGCAAACGGGTCCAGTCAGGCTCGTG
GACCACCGTGGGAGGCTTGGATGCTAGCGAGGACGATACATCGCCGCCTA
GGAGAAGAATGCGGCACGATAGTTCGGACGAGGATGCCTCCCCCCCGCGT
CGGAACGAGAACAGCGGCTCCGCGGGCTGCGGTGACGCTTCCCCTCCCCG
GCGTCCGCGCCCAAATGGTAGGAGGAACTCCGCTCGGTCTAGCCTTCTCC
CGGATGCTTCTCCCCCGCGCAAGAGACCGATGGCAAGCGGAGATGACAAG
AGAAGCAGTGGAACTGCGGGGGGAAGAAATAAGCTTTCTCAGGATGGTAG
CGTGAGGGGTGATGGCACCGACTCGTCGCCCCCGAGGCGCGCAAGCCGAG
CTGAAAACGGTCGCGGAACCAGGAGAAGGTGGGACAGTGCCGAAGGCGTG
AACGAGCGCGACGCTTCCCCTCCCAGGAGGAAACGTAGCAGTCCCGGAGG
CAGGGATGGGCGTGACGTCTCCCCTCCTAGGAGGGTGCGTGATGGTGCCG
AAGGCGCGGACGAGCACGACACTTCTCCTCCCAGAAGAAGGCGGCGGCAC
GACAGTAGTGACGATGACGATCCCGACGATGCGGCAACAAGAGGCGCGCG
CGACGCTTCTCCTCCCAGAAGGAGTATGAAAGCAAGCGGGCGTGAGAGCG
ATGCGTCTCCGCCTAGGCGAAGGCGGCAGCAAGAGGATAATGGTGACAGA
GCGGCAGATGAAAAAGGACGATGGCGGGATCCTCCCGGCCAGGGGGAGAA
GGTTGGCGGCGGTAGCGATCGCACGAAAACTTCGTCGGGGTATAACGCAG
GCCTTCAGTCAGGAAAGGACTTCAAGGTCGTGGAGCAGCGGCTGAGGCAG
AAGCACGTAAGGATAGGAACGTGAATGATAACTCAAACTGCTCTGATTTG
TTTTGATTTCCGTACACGTATACTTACTCCGTAAATATCACGGAAGGAAA
AAAAGCCTTCCAAAACTTTTTTTCTTCCTCCTTCGCCGTTTCGTTTCTAT
TATTACTATTCTTTATAAACACACACACACACACAAAATCGTTACGCAAA
ACAACCTTTGAGTGACGACCCCTCGGGTGCGTGCTGACGCGCTTCTGCTG
GTGATGGTGGATGTCCGCCGCGAATGGTGCCTGCTCGATCTCCTCACAGG
AATCGGAGATGAAGGCTATGGACAAGACCTACTCCGGCCAGGGCGCTGAG
ACCGTGTACCGTGACAAAAAGGGCAACAAGGTGGACATGCTCACCGAGTT
CAAGAAGCAGCAAAAAACTAATGCTGAAAAGAAGGTACGGAGCGTCTCCA
AGCCGCTAGAGTCATCTCTAGGGACTCGCTCTGCCTCCGCTTAGCGTAAC
TTTCTAGCTCTAACGTGCCACCACGTATTTCCCCAGACGAAGGCGGCAGC
GGGGAGGGAGGGGAGGTCATGAACGCAGCGGTTGCGTTTCTGGGGGGGTT
GGGGTCGGGAAAAGAAATAATCGGTTGCAGATGGTCGCGTTATTGTGAAC
CCGGCGCGTTGTACTTTGACGCACTTACGTTTTATAAATATACGTATATA
ATCGGGCAACAATATTGATGGCATAAACGTGGTCCGGTGCACGCGCTTCA
GGAATGCTGCCACGGCCTTCAAGCAGTGTTTTTTTGTGTTTCGCCCCTCC
CCTCGTACCACGCACGGCACGCTACACACCTTACACCATGGCGCACCCGG
ATCGATCCATGGCGGTATCATTCTCGGCGGCGGCGGCGGGGTATGACCAA
AAAAGGTTGAGGAGGCCAAGGATCAGTTCGCCTGGGGCCGCGGCAAGGTT
CAGAAAGAGGTGGAGAAGCAGTGGAAGGAGGAGCTTGACAACATTGCCGC
GGAGCCCTTCGCGCGCTCCGTTGGCGACGCGCGGCTCGAGGAGATGAGGA
AGGCTGAGATCCGGCCGGACGATCCCATGGCGGCCTACATCGCGAAGGTG
AAACCATGGTGTGCAGCGCGGTGCGCAAGCAGACTCGCAGCGGGTTCTTC
TTTTGGCAAAACAAAAACAAAAATGGCGCGGGGTGGGGTTAATGCGAGAT
TTTTTTTCACTCCTTCTCTCCACGATATCACCACGCTGGATTCTTTGTTG
TTTTGTGAGTGACGGCTCCGTCGTCTGTATTCCAACCAAGCCGTCCACCT
GGGAGGGTGGGCCCTCTCCACGGAAGCTTTTTTGTGACGGTCCTCCTACA
AACAGAAACGTGATGTCCCTCCCCCCTCCCCTTTAACGTAACCACCGCGT
ATCCCTGATCCTGGTGAATCTTCCCCGACGTTCTAATTATTTAAATGTAG
AAAAAATCGAAGGCAAATGCCAAGAGCGGGAAACCAGCCAAGCCGGAGTA
CAAGGGCCCGGCACCCAAGCCAAACCGGTGTGTACCAGTTAGATGAGGCT
TCTTTTATACGTTTTATTCAGCCCACGTCTCTCGCCAAAAAACACCGAAC
AGCGCATTCTCCAGTCGCCCGTCCGCGGTCGTGCCTGTGCTGTCTTCCCC
AACACTCGGAGAGAAACGGCTTGACGCACGCGGTCATGTTTTTTAAAGTG
TAGATTTTTACGCTCGTGAGCTTTGTGCGAGAGGTGGCGTACGCGTGATC
TGAATTTCGCGCTTCCGTTCACGCTGTGTTTGAGACGCAATGCCGTTGGT
GTGTGCTGGGTGATGGGGCGGGGCGGAAGAGGTAAGATTATGTTACTGTT
TTTTTCGGGCGATTCGAATAATCCTACCAAGTTATGGATGCTATGTCTTA
GCCTGGGTGTCCATATATCTTTCCCATTTCGATTGTATAATTTCATTAAC
CCGAGCAACCATCTTTCGTACTCCATCCTTTCAACCCCCTCCACCCCTTG
CTTCTCTGCCTTAACTCGATACTTCCACGATAATCCGGCCGACCACGGAG
CTGCAGCAAGCTGTGTGGATTGCTCGTTAGGCACACGCGAGAACCCCTCT
CTCTCTTTCCCTCCTGTTTTTCTCCGTAAAACATGCCCCTCCGATATTAT
CGAACTCCTTTGTTAACCAGGTTCGCTATCCGACCAGGATACCGCTGGGA
TGGCGTGGACCGTGGCAACGGGTGGGAGGATAAGATTGTCGCTAAAGGGA
TGGACAATCAGTACAAGGCTGACCTCGCTTACAAGTGGGCGACCGCAGAC
ATGTAGCGGGGGAATAAAGGGGGGAAGGAGCATACCAAAGACCTTTTTTT
TAATGCAATATTAAAAAGTATCATCTTAATAATCGACACCTTTGTCTGAT
GCTCCGCATGCATTGAAGCGCCATTCCAAAGGCGAACCTAGCGAGGCGGT
TTTCTTCTGTACAGCGCCTTGCTGTTTTGTGTAGCACGGAGCAGGCTTCG
TCGGCCGACCTCTCGGATGGACGGAAGGGCGCGCGTGCCCTGGCGC
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Coding sequence (CDS) from alignment at H-elongata_contig8311:717..4912+

>mRNA_H-elongata_contig8311.15947.1 ID=mRNA_H-elongata_contig8311.15947.1|Name=mRNA_H-elongata_contig8311.15947.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3132bp|location=Sequence derived from alignment at H-elongata_contig8311:717..4912+ (Himanthalia elongata Himel1 dioecious)
ATGTCACGCGGCGGGGGTGGTCTGCGCATTATCGATGATGGAGAGGACAC
GGTCGTGCCAGACAGAAAACAGGTCGAAAAAGCGTGGGAAGACGAAGAAG
CCGAAGATGTCACGCGGCGGGGGTGGTCTGCGCATTATCGATGATGGAGA
GGACACGGTCGTGCCAGACAGAAAACAGGTCGAAAAAGCGTGGGAAGACG
AAGAAGCCGAAGAAGAAAAGCCTACCCTGGTTGTAGGAGAGCTTGAGGAG
GGCAAACGGGTCCAGTCAGGCTCGTGGACCACCGTGGGAGGCTTGGATGC
TAGCGAGGACGATACATCGCCGCCTAGGAGAAGAATGCGGCACGATAGTT
CGGACGAGGATGCCTCCCCCCCGCGTCGGAACGAGAACAGCGGCTCCGCG
GGCTGCGGTGACGCTTCCCCTCCCCGGCGTCCGCGCCCAAATGGTAGGAG
GAACTCCGCTCGGTCTAGCCTTCTCCCGGATGCTTCTCCCCCGCGCAAGA
GACCGATGGCAAGCGGAGATGACAAGAGAAGCAGTGGAACTGCGGGGGGA
AGAAATAAGCTTTCTCAGGATGGTAGCGTGAGGGGTGATGGCACCGACTC
GTCGCCCCCGAGGCGCGCAAGCCGAGCTGAAAACGGTCGCGGAACCAGGA
GAAGGTGGGACAGTGCCGAAGGCGTGAACGAGCGCGACGCTTCCCCTCCC
AGGAGGAAACGTAGCAGTCCCGGAGGCAGGGATGGGCGTGACGTCTCCCC
TCCTAGGAGGGTGCGTGATGGTGCCGAAGGCGCGGACGAGCACGACACTT
CTCCTCCCAGAAGAAGGCGGCGGCACGACAGTAGTGACGATGACGATCCC
GACGATGCGGCAACAAGAGGCGCGCGCGACGCTTCTCCTCCCAGAAGGAG
TATGAAAGCAAGCGGGCGTGAGAGCGATGCGTCTCCGCCTAGGCGAAGGC
GGCAGCAAGAGGATAATGGTGACAGAGCGGCAGATGAAAAAGGACGATGG
CGGGATCCTCCCGGCCAGGGGGAGAAGGTTGGCGGCGGTAGCGATCGCAC
GAAAACTTCGTCGGGGTATAACGCAGGCCTTCAGTCAGGAAAGGACTTCA
AGGTCGTGGAGCAGCGGCTGAGGCAGAAGCACAAGAAAAGCCTACCCTGG
TTGTAGGAGAGCTTGAGGAGGGCAAACGGGTCCAGTCAGGCTCGTGGACC
ACCGTGGGAGGCTTGGATGCTAGCGAGGACGATACATCGCCGCCTAGGAG
AAGAATGCGGCACGATAGTTCGGACGAGGATGCCTCCCCCCCGCGTCGGA
ACGAGAACAGCGGCTCCGCGGGCTGCGGTGACGCTTCCCCTCCCCGGCGT
CCGCGCCCAAATGGTAGGAGGAACTCCGCTCGGTCTAGCCTTCTCCCGGA
TGCTTCTCCCCCGCGCAAGAGACCGATGGCAAGCGGAGATGACAAGAGAA
GCAGTGGAACTGCGGGGGGAAGAAATAAGCTTTCTCAGGATGGTAGCGTG
AGGGGTGATGGCACCGACTCGTCGCCCCCGAGGCGCGCAAGCCGAGCTGA
AAACGGTCGCGGAACCAGGAGAAGGTGGGACAGTGCCGAAGGCGTGAACG
AGCGCGACGCTTCCCCTCCCAGGAGGAAACGTAGCAGTCCCGGAGGCAGG
GATGGGCGTGACGTCTCCCCTCCTAGGAGGGTGCGTGATGGTGCCGAAGG
CGCGGACGAGCACGACACTTCTCCTCCCAGAAGAAGGCGGCGGCACGACA
GTAGTGACGATGACGATCCCGACGATGCGGCAACAAGAGGCGCGCGCGAC
GCTTCTCCTCCCAGAAGGAGTATGAAAGCAAGCGGGCGTGAGAGCGATGC
GTCTCCGCCTAGGCGAAGGCGGCAGCAAGAGGATAATGGTGACAGAGCGG
CAGATGAAAAAGGACGATGGCGGGATCCTCCCGGCCAGGGGGAGAAGGTT
GGCGGCGGTAGCGATCGCACGAAAACTTCGTCGGGGTATAACGCAGGCCT
TCAGTCAGGAAAGGACTTCAAGGTCGTGGAGCAGCGGCTGAGGCAGAAGC
ACGAATCGGAGATGAAGGCTATGGACAAGACCTACTCCGGCCAGGGCGCT
GAGACCGTGTACCGTGACAAAAAGGGCAACAAGGTGGACATGCTCACCGA
GTTCAAGAAGCAGCAAAAAACTAATGCTGAAAAGAAGGAATCGGAGATGA
AGGCTATGGACAAGACCTACTCCGGCCAGGGCGCTGAGACCGTGTACCGT
GACAAAAAGGGCAACAAGGTGGACATGCTCACCGAGTTCAAGAAGCAGCA
AAAAACTAATGCTGAAAAGAAGGTTGAGGAGGCCAAGGATCAGTTCGCCT
GGGGCCGCGGCAAGGTTCAGAAAGAGGTGGAGAAGCAGTGGAAGGAGGAG
CTTGACAACATTGCCGCGGAGCCCTTCGCGCGCTCCGTTGGCGACGCGCG
GCTCGAGGAGATGAGGAAGGCTGAGATCCGGCCGGACGATCCCATGGCGG
CCTACATCGCGAAGGTTGAGGAGGCCAAGGATCAGTTCGCCTGGGGCCGC
GGCAAGGTTCAGAAAGAGGTGGAGAAGCAGTGGAAGGAGGAGCTTGACAA
CATTGCCGCGGAGCCCTTCGCGCGCTCCGTTGGCGACGCGCGGCTCGAGG
AGATGAGGAAGGCTGAGATCCGGCCGGACGATCCCATGGCGGCCTACATC
GCGAAGAAAAAATCGAAGGCAAATGCCAAGAGCGGGAAACCAGCCAAGCC
GGAGTACAAGGGCCCGGCACCCAAGCCAAACCGAAAAAATCGAAGGCAAA
TGCCAAGAGCGGGAAACCAGCCAAGCCGGAGTACAAGGGCCCGGCACCCA
AGCCAAACCGGTTCGCTATCCGACCAGGATACCGCTGGGATGGCGTGGAC
CGTGGCAACGGGTGGGAGGATAAGATTGTCGCTAAAGGGATGGACAATCA
GTACAAGGCTGACCTCGCTTACAAGTGGGCGACCGCAGACATGTAGGTTC
GCTATCCGACCAGGATACCGCTGGGATGGCGTGGACCGTGGCAACGGGTG
GGAGGATAAGATTGTCGCTAAAGGGATGGACAATCAGTACAAGGCTGACC
TCGCTTACAAGTGGGCGACCGCAGACATGTAG
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