mRNA_H-elongata_contig83078.15944.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83078.15944.1
Unique NamemRNA_H-elongata_contig83078.15944.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83078.15944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83078contigH-elongata_contig83078:429..1018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size571
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83078.15944.1prot_H-elongata_contig83078.15944.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83078 524..1013 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931237.6476345-UTR-H-elongata_contig83078:428..5231622931237.6476345-UTR-H-elongata_contig83078:428..523Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83078 429..523 -
1691679754.5273895-UTR-H-elongata_contig83078:428..5231691679754.5273895-UTR-H-elongata_contig83078:428..523Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83078 429..523 -
1622931237.7116687-UTR-H-elongata_contig83078:1013..10181622931237.7116687-UTR-H-elongata_contig83078:1013..1018Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83078 1014..1018 -
1691679754.5556757-UTR-H-elongata_contig83078:1013..10181691679754.5556757-UTR-H-elongata_contig83078:1013..1018Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83078 1014..1018 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931237.669072-CDS-H-elongata_contig83078:523..7061622931237.669072-CDS-H-elongata_contig83078:523..706Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83078 524..706 -
1691679754.536845-CDS-H-elongata_contig83078:523..7061691679754.536845-CDS-H-elongata_contig83078:523..706Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83078 524..706 -
1622931237.6898234-CDS-H-elongata_contig83078:725..10131622931237.6898234-CDS-H-elongata_contig83078:725..1013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83078 726..1013 -
1691679754.54613-CDS-H-elongata_contig83078:725..10131691679754.54613-CDS-H-elongata_contig83078:725..1013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83078 726..1013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83078.15944.1

>prot_H-elongata_contig83078.15944.1 ID=prot_H-elongata_contig83078.15944.1|Name=mRNA_H-elongata_contig83078.15944.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp
MQEELARTAEASTTAATASEATTEKAQARISELAEQLAAATRGSNEEVGA
LEIQMQQTAEKERQLWGELEWSRASLAELSGSLEESRARELEARNRNSSS
VTPGWPRQRRKQARGSQRWQHAFPRQRRVSRRRRKRRRPRRHGARKRVLR
LENSRR*
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mRNA from alignment at H-elongata_contig83078:429..1018-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83078.15944.1 ID=mRNA_H-elongata_contig83078.15944.1|Name=mRNA_H-elongata_contig83078.15944.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=590bp|location=Sequence derived from alignment at H-elongata_contig83078:429..1018- (Himanthalia elongata Himel1 dioecious)
CTGCGATGCAGGAGGAGCTCGCGCGGACAGCCGAAGCATCTACCACCGCC
GCAACGGCAAGCGAAGCGACTACGGAGAAGGCGCAGGCCCGTATCAGCGA
ACTCGCGGAGCAGCTGGCGGCGGCAACGCGGGGGAGCAACGAAGAGGTTG
GTGCCCTTGAGATACAGATGCAGCAAACGGCGGAGAAGGAGAGGCAACTG
TGGGGAGAGCTGGAGTGGTCACGCGCCAGCCTGGCAGAGCTTTCGGGGTC
TCTGGAAGAGTCCCGGGCGAGAGAGCTGGAGGCGCGCAACCGGGCGGAGG
TCTTAGGGTCAGAACTCGAGCTCCGTGACGCCAGGGTGGCCGAGGCAAAG
GCGGAAGCAGGCGAGAGGGTCGCAGCGGTGGCAGCACGCCTTTCCAAGAC
AGAGGCGTGTCTCCAGGAGGCGAAGGAAGCGGCGGAGACCGCGCAGGCAC
GGGGCGAGGAAGCGCGTGCTGCGGTTGGAAAACTCGAGGCGGTAGTTGAA
AGCGCCGAGCGGGAAGAATCGGATCGCGTTTTGATCCTGCGGGGGCAGAT
CGACGAGGCCGCTCGAGCGCGCTTCATCGCTGAGGAGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig83078:429..1018-

>mRNA_H-elongata_contig83078.15944.1 ID=mRNA_H-elongata_contig83078.15944.1|Name=mRNA_H-elongata_contig83078.15944.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig83078:429..1018- (Himanthalia elongata Himel1 dioecious)
ATGCAGGAGGAGCTCGCGCGGACAGCCGAAGCATCTACCACCGCCGCAAC
GGCAAGCGAAGCGACTACGGAGAAGGCGCAGGCCCGTATCAGCGAACTCG
CGGAGCAGCTGGCGGCGGCAACGCGGGGGAGCAACGAAGAGGTTGGTGCC
CTTGAGATACAGATGCAGCAAACGGCGGAGAAGGAGAGGCAACTGTGGGG
AGAGCTGGAGTGGTCACGCGCCAGCCTGGCAGAGCTTTCGGGGTCTCTGG
AAGAGTCCCGGGCGAGAGAGCTGGAGGCGCGCAACCGGATGCAGGAGGAG
CTCGCGCGGACAGCCGAAGCATCTACCACCGCCGCAACGGCAAGCGAAGC
GACTACGGAGAAGGCGCAGGCCCGTATCAGCGAACTCGCGGAGCAGCTGG
CGGCGGCAACGCGGGGGAGCAACGAAGAGGTTGGTGCCCTTGAGATACAG
ATGCAGCAAACGGCGGAGAAGGAGAGGCAACTGTGGGGAGAGCTGGAGTG
GTCACGCGCCAGCCTGGCAGAGCTTTCGGGGTCTCTGGAAGAGTCCCGGG
CGAGAGAGCTGGAGGCGCGCAACCGGAACTCGAGCTCCGTGACGCCAGGG
TGGCCGAGGCAAAGGCGGAAGCAGGCGAGAGGGTCGCAGCGGTGGCAGCA
CGCCTTTCCAAGACAGAGGCGTGTCTCCAGGAGGCGAAGGAAGCGGCGGA
GACCGCGCAGGCACGGGGCGAGGAAGCGCGTGCTGCGGTTGGAAAACTCG
AGGCGGTAGAACTCGAGCTCCGTGACGCCAGGGTGGCCGAGGCAAAGGCG
GAAGCAGGCGAGAGGGTCGCAGCGGTGGCAGCACGCCTTTCCAAGACAGA
GGCGTGTCTCCAGGAGGCGAAGGAAGCGGCGGAGACCGCGCAGGCACGGG
GCGAGGAAGCGCGTGCTGCGGTTGGAAAACTCGAGGCGGTAG
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