mRNA_H-elongata_contig8304.15939.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8304.15939.1
Unique NamemRNA_H-elongata_contig8304.15939.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8304.15939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8304contigH-elongata_contig8304:1757..2072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931237.3739526-CDS-H-elongata_contig8304:1756..20711622931237.3739526-CDS-H-elongata_contig8304:1756..2071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8304 1757..2071 +
1691679754.4425154-CDS-H-elongata_contig8304:1756..20711691679754.4425154-CDS-H-elongata_contig8304:1756..2071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8304 1757..2071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8304.15939.1prot_H-elongata_contig8304.15939.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8304 1757..2071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8304.15939.1

>prot_H-elongata_contig8304.15939.1 ID=prot_H-elongata_contig8304.15939.1|Name=mRNA_H-elongata_contig8304.15939.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
QHKHPTSDYINLFMCLIGHSKYNLTASRESNSSQLTTSIRQPNPVDFTDP
QQQQQPCALSISRAIINYAPYYDVYSDGLSRSTRGFAVLHTLAILVITSE
ETQEH
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mRNA from alignment at H-elongata_contig8304:1757..2072+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8304.15939.1 ID=mRNA_H-elongata_contig8304.15939.1|Name=mRNA_H-elongata_contig8304.15939.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=316bp|location=Sequence derived from alignment at H-elongata_contig8304:1757..2072+ (Himanthalia elongata Himel1 dioecious)
CAGCATAAACATCCAACTAGTGACTATATAAACCTATTTATGTGTCTTAT
TGGCCATAGCAAATATAATCTAACTGCATCTAGGGAGTCTAACTCTTCAC
AGCTGACCACGAGCATAAGGCAGCCAAATCCGGTTGACTTTACTGACCCA
CAACAACAACAACAACCGTGCGCTCTATCCATTTCGAGAGCAATTATCAA
CTACGCCCCGTATTACGACGTTTACAGCGACGGCCTATCAAGGTCAACAC
GGGGATTCGCTGTCTTACACACCCTCGCTATCCTTGTAATAACATCTGAA
GAGACTCAAGAACACT
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Coding sequence (CDS) from alignment at H-elongata_contig8304:1757..2072+

>mRNA_H-elongata_contig8304.15939.1 ID=mRNA_H-elongata_contig8304.15939.1|Name=mRNA_H-elongata_contig8304.15939.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig8304:1757..2072+ (Himanthalia elongata Himel1 dioecious)
CAGCATAAACATCCAACTAGTGACTATATAAACCTATTTATGTGTCTTAT
TGGCCATAGCAAATATAATCTAACTGCATCTAGGGAGTCTAACTCTTCAC
AGCTGACCACGAGCATAAGGCAGCCAAATCCGGTTGACTTTACTGACCCA
CAACAACAACAACAACCGTGCGCTCTATCCATTTCGAGAGCAATTATCAA
CTACGCCCCGTATTACGACGTTTACAGCGACGGCCTATCAAGGTCAACAC
GGGGATTCGCTGTCTTACACACCCTCGCTATCCTTGTAATAACATCTGAA
GAGACTCAAGAACACCAGCATAAACATCCAACTAGTGACTATATAAACCT
ATTTATGTGTCTTATTGGCCATAGCAAATATAATCTAACTGCATCTAGGG
AGTCTAACTCTTCACAGCTGACCACGAGCATAAGGCAGCCAAATCCGGTT
GACTTTACTGACCCACAACAACAACAACAACCGTGCGCTCTATCCATTTC
GAGAGCAATTATCAACTACGCCCCGTATTACGACGTTTACAGCGACGGCC
TATCAAGGTCAACACGGGGATTCGCTGTCTTACACACCCTCGCTATCCTT
GTAATAACATCTGAAGAGACTCAAGAACAC
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