mRNA_H-elongata_contig82939.15932.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82939.15932.1
Unique NamemRNA_H-elongata_contig82939.15932.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig82939.15932.1 vs. uniprot
Match: D7G669_ECTSI (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G669_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 1.510e-52
Identity = 91/120 (75.83%), Postives = 102/120 (85.00%), Query Frame = 1
Query:    1 RREPLSYFVVDCRPKEQVKAGRFPTAFHLDPSSMDNPEEMAEKIMLDFEPLRGRAHVCLVGSGDGHLRARGSWVQTMGGKDDGAGAIGSQRAARDEYSYVNTCALFFVKRGFPFVSVLEG 360
            +R+PL++F VDCRPK+QV AGRFPTA+HLDPS+M+NPEEMAEKIM  FEPLR RAHVCL+GSGDGHLRARG      G      G IGSQRAARD+YSYVNTCALFFVKRGFP+VSVLEG
Sbjct:  718 QRQPLAFFAVDCRPKQQVDAGRFPTAYHLDPSAMENPEEMAEKIMPVFEPLRKRAHVCLIGSGDGHLRARGL---AGGNGHQVGGGIGSQRAARDDYSYVNTCALFFVKRGFPYVSVLEG 834          
BLAST of mRNA_H-elongata_contig82939.15932.1 vs. uniprot
Match: K8YQB7_NANGC (Tbc1 domain family member 23-like protein (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQB7_NANGC)

HSP 1 Score: 98.6 bits (244), Expect = 7.970e-22
Identity = 51/127 (40.16%), Postives = 77/127 (60.63%), Query Frame = 1
Query:    1 RREPLSYFVVDCRPKEQVKAGRFPTAFHLDPSSMDNPEEMAEKIMLDFEPLRGRAHVCLVGSGDGHLRARGSWVQTMGGKDDGAGAIGSQR-------AARDEYSYVNTCALFFVKRGFPFVSVLEG 360
            R   L Y  +DCRPKE V  GRFPTA+H+DPS +D+PEE+  +++   EP +G  H+ L+G+G     + G     +  +  G GA  +QR       A R +  +++T ALF +K+GFP+VS+L+G
Sbjct:  108 RLSSLRYLALDCRPKEHVAMGRFPTAYHVDPSRLDDPEEIT-RLLATLEPFKGSRHLLLMGTG----ASGGGLAPAVPKEGGGKGATPAQRFKEHMALAERQDMGHLHTAALFLLKQGFPYVSLLQG 229          
BLAST of mRNA_H-elongata_contig82939.15932.1 vs. uniprot
Match: W7U2B4_9STRA (Tbc1 domain family member 23 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2B4_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.500e-21
Identity = 51/127 (40.16%), Postives = 77/127 (60.63%), Query Frame = 1
Query:    1 RREPLSYFVVDCRPKEQVKAGRFPTAFHLDPSSMDNPEEMAEKIMLDFEPLRGRAHVCLVGSGDGHLRARGSWVQTMGGKDDGAGAIGSQR-------AARDEYSYVNTCALFFVKRGFPFVSVLEG 360
            R   L Y  +DCRPKE V  GRFPTA+H+DPS +D+PEE+  +++   EP +G  H+ L+G+G     + G     +  +  G GA  +QR       A R +  +++T ALF +K+GFP+VS+L+G
Sbjct:  602 RLSSLRYLALDCRPKEHVAMGRFPTAYHVDPSRLDDPEEIT-RLLATLEPFKGSRHLLLMGTG----ASGGGLAPAVPKEGGGKGATPAQRFKEHMALAERQDMGHLHTAALFLLKQGFPYVSLLQG 723          
BLAST of mRNA_H-elongata_contig82939.15932.1 vs. uniprot
Match: A0A4D9DAX1_9STRA (Rhodanese domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAX1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 5.270e-21
Identity = 50/127 (39.37%), Postives = 76/127 (59.84%), Query Frame = 1
Query:    1 RREPLSYFVVDCRPKEQVKAGRFPTAFHLDPSSMDNPEEMAEKIMLDFEPLRGRAHVCLVGSGDGHLRARGSWVQTMGGKDDGAGAIGSQR-------AARDEYSYVNTCALFFVKRGFPFVSVLEG 360
            R   L Y  +DCRPKE V  GRFPTA+H+DP  +D+PEE+  +++   EP +G  H+ L+G+G     + G     +  +  G GA  +QR       A R +  +++T ALF +K+GFP+VS+L+G
Sbjct: 1033 RLSSLRYLALDCRPKEHVAMGRFPTAYHVDPGRLDDPEEIT-RLLATLEPFKGSRHLLLMGTG----ASGGGLAPAVPKEGGGKGATPAQRFKEHMALAERQDMGHLHTAALFLLKQGFPYVSLLQG 1154          
BLAST of mRNA_H-elongata_contig82939.15932.1 vs. uniprot
Match: A0A067CAD9_SAPPC (TBC1 domain family member 23 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CAD9_SAPPC)

HSP 1 Score: 84.0 bits (206), Expect = 2.000e-16
Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = 1
Query:    7 EPLSYFVVDCRPKEQVKAGRFPTAFHLDPSSMDNPEEMAEKIMLDFEPLRGRAHVCLVGSGDGHLRARGSWVQTMG-GKDDGAGAIGSQRAARDEYSYVNTCALFFVKRGFPFVSVLEG 360
            E + YF+VDCRP+E +  G+ PT+FH +  S+ NP    + +M   +P++   H+C++G G  H R   S V+ +   K D A  +    A       VN   +F  KRGFP+VS+++G
Sbjct:  675 EKIRYFIVDCRPQEYLAHGQIPTSFHFNSESLMNPSAF-DAVMATLQPMKSSVHICIMGHG--HSRYASSMVKDLNLSKSDVADMVAKDAAQ------VNDAVMFLTKRGFPYVSIIDG 784          
BLAST of mRNA_H-elongata_contig82939.15932.1 vs. uniprot
Match: A0A1W0A934_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A934_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.770e-16
Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = 1
Query:    7 EPLSYFVVDCRPKEQVKAGRFPTAFHLDPSSMDNPEEMAEKIMLDFEPLRGRAHVCLVGSGDGHLRARGSWVQTMG-GKDDGAGAIGSQRAARDEYSYVNTCALFFVKRGFPFVSVLEG 360
            E + YF+VDCRP+E +  GR PT+FH +  S+ +P    + +M   EP++   H+C++G G  H R   S V+ +   K D A  I    A       +N   +F  K+GFP+VS+++G
Sbjct: 1025 EKIRYFIVDCRPQESLALGRIPTSFHFNSESLLDPAAF-DTVMATLEPMKSSVHICIMGHG--HSRYASSMVKDLNYNKSDVADMIAKDAAQ------INDTVMFLTKKGFPYVSIIDG 1134          
BLAST of mRNA_H-elongata_contig82939.15932.1 vs. uniprot
Match: B8C1V7_THAPS (Rhodanese domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1V7_THAPS)

HSP 1 Score: 82.8 bits (203), Expect = 5.170e-16
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 1
Query:   13 LSYFVVDCRPKEQVKA-GRFPTAFHLDPSSMDNPEEMAEKIMLDFEPLRGRAHVCLVGSGDGHLRARGSWVQTMGGKDDGAGAIGSQRAARDEYSYVNTCALFFVKRGFPFVSVLEG 360
            L ++++DCRP+   K  GRFPTA ++ P  + +P+E+ +K++  FE LRG  H+C++G G     A      T             ++   ++ S  + CALFF+K+GFPFVSVL G
Sbjct: 1037 LKFYLIDCRPESIAKEQGRFPTAVNMSPQKLQDPDEV-QKLLDMFEALRGAVHICIMGEGFASFPALYDHPLTAE----------EEKLLDEDVSRTSNCALFFLKKGFPFVSVLRG 1142          
BLAST of mRNA_H-elongata_contig82939.15932.1 vs. uniprot
Match: A0A1V9ZSV3_9STRA (Rhodanese domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSV3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 9.470e-16
Identity = 40/119 (33.61%), Postives = 65/119 (54.62%), Query Frame = 1
Query:    7 EPLSYFVVDCRPKEQVKAGRFPTAFHLDPSSMDNPEEMAEKIMLDFEPLRGRAHVCLVGSGDGHLRARGSWVQTMG-GKDDGAGAIGSQRAARDEYSYVNTCALFFVKRGFPFVSVLEG 360
            E + YF+VDCRP+E +  G  PT+FH +  S+ +P    + +M   +P++   H+C++G G  H R   S V+ +   K D A  +    A       +N   +F  KRGFP+VS+++G
Sbjct:  692 EKIRYFIVDCRPRESIALGTIPTSFHFNSESVMDPAAF-DAVMATLQPMKNSVHICIMGHG--HARYAASMVKDLNFAKSDVADMVAKDAAQ------INDAVMFLTKRGFPYVSIVDG 801          
BLAST of mRNA_H-elongata_contig82939.15932.1 vs. uniprot
Match: A0A7S1ZR35_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZR35_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.380e-15
Identity = 42/117 (35.90%), Postives = 70/117 (59.83%), Query Frame = 1
Query:   13 LSYFVVDCRPKEQVKA-GRFPTAFHLDPSSMDNPEEMAEKIMLDFEPLRGRAHVCLVGSGDGHLRARGSWVQTMGGKDDGAGAIGSQRAARDEYSYVNTCALFFVKRGFPFVSVLEG 360
            + ++++D RP E  K  GRFPT+  L P +M +P+++ +++ + FE LRG  H+C++G G     A    +  +  KD+          A D+ +  + CALFF+K+GFPFVS+L+G
Sbjct:  312 IKFYLIDSRPDESAKEQGRFPTSISLSPEAMMDPDKVQQQLDM-FESLRGAVHICVMGEGFSKFPA----LYGLKLKDE------EMAHAEDDEARTSMCALFFIKKGFPFVSILDG 417          
BLAST of mRNA_H-elongata_contig82939.15932.1 vs. uniprot
Match: A0A1E7EUG7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUG7_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.390e-15
Identity = 47/120 (39.17%), Postives = 65/120 (54.17%), Query Frame = 1
Query:    4 REPLSYFVVDCRPKEQVKA-GRFPTAFHLDPSSMDNPEEMAEKIMLDFEPLRGRAHVCLVGSGDGHLRARGSWVQTMGGKDDGAGAIGSQRAARDEYSYVNTCALFFVKRGFPFVSVLEG 360
            R PL ++VVD RP+   +  GRFPT+  L P  +D+  +M E+ ++ FE LRG  H+C++G G   L        T G               R++    N CALFF+ RGFPFVS+LEG
Sbjct:  742 RMPLKFYVVDSRPEAAAQEQGRFPTSLSLSPEKLDDINKMKEEEIM-FESLRGSVHICIMGEGYASLPRLYGHKMTNG----------LAEFIREDDLRNNKCALFFLSRGFPFVSILEG 850          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82939.15932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G669_ECTSI1.510e-5275.83Rhodanese domain-containing protein n=2 Tax=Ectoca... [more]
K8YQB7_NANGC7.970e-2240.16Tbc1 domain family member 23-like protein (Fragmen... [more]
W7U2B4_9STRA1.500e-2140.16Tbc1 domain family member 23 n=1 Tax=Nannochlorops... [more]
A0A4D9DAX1_9STRA5.270e-2139.37Rhodanese domain-containing protein n=1 Tax=Nannoc... [more]
A0A067CAD9_SAPPC2.000e-1635.29TBC1 domain family member 23 n=2 Tax=Saprolegnia T... [more]
A0A1W0A934_9STRA3.770e-1635.29Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
B8C1V7_THAPS5.170e-1636.75Rhodanese domain-containing protein n=1 Tax=Thalas... [more]
A0A1V9ZSV3_9STRA9.470e-1633.61Rhodanese domain-containing protein n=1 Tax=Achlya... [more]
A0A7S1ZR35_9STRA2.380e-1535.90Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1E7EUG7_9STRA2.390e-1539.17Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82939contigH-elongata_contig82939:1557..2753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.0
Seed ortholog evalue1e-44
Seed eggNOG ortholog2880.D7G669
EggNOG free text desc.embryonic brain development
EggNOG OGsKOG3636@1,KOG3636@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRhodanese-like domain
Ec32 orthologEc-00_009680.1
Exons3
Model size360
Cds size360
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82939.15932.1prot_H-elongata_contig82939.15932.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82939 1557..2753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931236.4087825-CDS-H-elongata_contig82939:1556..16071622931236.4087825-CDS-H-elongata_contig82939:1556..1607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82939 1557..1607 +
1691679753.9999151-CDS-H-elongata_contig82939:1556..16071691679753.9999151-CDS-H-elongata_contig82939:1556..1607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82939 1557..1607 +
1622931236.425682-CDS-H-elongata_contig82939:1753..18281622931236.425682-CDS-H-elongata_contig82939:1753..1828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82939 1754..1828 +
1691679754.0231657-CDS-H-elongata_contig82939:1753..18281691679754.0231657-CDS-H-elongata_contig82939:1753..1828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82939 1754..1828 +
1622931236.4403198-CDS-H-elongata_contig82939:2519..27531622931236.4403198-CDS-H-elongata_contig82939:2519..2753Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82939 2520..2753 +
1691679754.044787-CDS-H-elongata_contig82939:2519..27531691679754.044787-CDS-H-elongata_contig82939:2519..2753Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82939 2520..2753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82939.15932.1

>prot_H-elongata_contig82939.15932.1 ID=prot_H-elongata_contig82939.15932.1|Name=mRNA_H-elongata_contig82939.15932.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
RREPLSYFVVDCRPKEQVKAGRFPTAFHLDPSSMDNPEEMAEKIMLDFEP
LRGRAHVCLVGSGDGHLRARGSWVQTMGGKDDGAGAIGSQRAARDEYSYV
NTCALFFVKRGFPFVSVLEG
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mRNA from alignment at H-elongata_contig82939:1557..2753+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82939.15932.1 ID=mRNA_H-elongata_contig82939.15932.1|Name=mRNA_H-elongata_contig82939.15932.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1197bp|location=Sequence derived from alignment at H-elongata_contig82939:1557..2753+ (Himanthalia elongata Himel1 dioecious)
AGACGAGAGCCGCTGTCGTACTTTGTGGTCGATTGTCGACCCAAGGAGCA AGTGAGTCGAAGAATATAACCGTTCTCTAATGTATCGTTTAGTTACGTTT CGTTTCGTCATGTCACTTTTTGTTATGTTCCGTTTCGTCACGTTTTTGTT ACGCTTCCTTTCTTTCTGTTACCTTTCGCGTCGCCTTTGGCCGACAGGTT AAAGCCGGCAGATTCCCGACGGCGTTCCATCTCGACCCGTCTTCCATGGA CAACCCGGAGGAGATGGCCGAGGTGCACGGCCTGCCCAGACCCTCGATTG TTTTCTCCGTTTTTGTTCTGATCCTTTAGTGTAGTACGTGAAAAAGACCG CTCTATAGATCAACACAAAGTATATGCTTGTCCACAGGGCCTCGCCGTTT TCTGATTGGCTTTATGCCCAGTCTCTGTACACCTTTTTTGTTTGTTGTCT CTTGGCAGACTGATGACGTCGTTAATCCCTCTGGAGAAGCGGTGAAGTCA TTGTCATTGCGTGAAGTGTTGTTCCAAAATGCCCTAAATAATGTGGCCGA ATTCGAGGGGGCGGGTAGGGGGGAGAAGGGGAGCGGTGCGCCTTTTTGAC ATCGGTGAAACTGATGATGCCGCCAAACTTGCGTGTTGTTTTCTGTAAAT GAGAAATCGATGACAGATGACAGATGCTTCGTAACGATAATATCCGGCAT ACCTGATACAGTGTTATACTAGCCAATGTCAGAAATCAAACGGATCCAAG GGATTATTTTTTGTTGTCCAGAATTTGTGTGTGTCTCTTTAACATCCCCT ATCCCCGGTACCTTTTCCCCTCATTATGTCCTCCATCCCCCATGTCCCCG CCTTGTATCGCCTGTCTTACCTCCAACTCCCCGCCCTTATGTATCCATTC ATCCCCTGTCCTATACTCTACCCCTTATATTCCCCTTATATTTCCCTTCT ACTGCTGGAGTAGAAAATTATGTTGGACTTCGAGCCCCTTAGAGGGCGTG CGCACGTTTGTCTCGTGGGAAGTGGGGATGGTCACCTGCGGGCCAGGGGA TCGTGGGTGCAGACCATGGGAGGCAAGGACGACGGAGCAGGGGCGATAGG GAGCCAGAGGGCGGCCAGAGACGAGTACAGCTACGTGAATACGTGCGCAC TCTTTTTCGTCAAGCGTGGTTTTCCGTTCGTTTCTGTGCTGGAGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig82939:1557..2753+

>mRNA_H-elongata_contig82939.15932.1 ID=mRNA_H-elongata_contig82939.15932.1|Name=mRNA_H-elongata_contig82939.15932.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig82939:1557..2753+ (Himanthalia elongata Himel1 dioecious)
AGACGAGAGCCGCTGTCGTACTTTGTGGTCGATTGTCGACCCAAGGAGCA
AAGACGAGAGCCGCTGTCGTACTTTGTGGTCGATTGTCGACCCAAGGAGC
AAGTTAAAGCCGGCAGATTCCCGACGGCGTTCCATCTCGACCCGTCTTCC
ATGGACAACCCGGAGGAGATGGCCGAGGTTAAAGCCGGCAGATTCCCGAC
GGCGTTCCATCTCGACCCGTCTTCCATGGACAACCCGGAGGAGATGGCCG
AGAAAATTATGTTGGACTTCGAGCCCCTTAGAGGGCGTGCGCACGTTTGT
CTCGTGGGAAGTGGGGATGGTCACCTGCGGGCCAGGGGATCGTGGGTGCA
GACCATGGGAGGCAAGGACGACGGAGCAGGGGCGATAGGGAGCCAGAGGG
CGGCCAGAGACGAGTACAGCTACGTGAATACGTGCGCACTCTTTTTCGTC
AAGCGTGGTTTTCCGTTCGTTTCTGTGCTGGAGGGGAAAATTATGTTGGA
CTTCGAGCCCCTTAGAGGGCGTGCGCACGTTTGTCTCGTGGGAAGTGGGG
ATGGTCACCTGCGGGCCAGGGGATCGTGGGTGCAGACCATGGGAGGCAAG
GACGACGGAGCAGGGGCGATAGGGAGCCAGAGGGCGGCCAGAGACGAGTA
CAGCTACGTGAATACGTGCGCACTCTTTTTCGTCAAGCGTGGTTTTCCGT
TCGTTTCTGTGCTGGAGGGG
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