mRNA_H-elongata_contig82939.15932.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig82939.15932.1 vs. uniprot
Match: D7G669_ECTSI (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G669_ECTSI) HSP 1 Score: 187 bits (474), Expect = 1.510e-52 Identity = 91/120 (75.83%), Postives = 102/120 (85.00%), Query Frame = 1
Query: 1 RREPLSYFVVDCRPKEQVKAGRFPTAFHLDPSSMDNPEEMAEKIMLDFEPLRGRAHVCLVGSGDGHLRARGSWVQTMGGKDDGAGAIGSQRAARDEYSYVNTCALFFVKRGFPFVSVLEG 360
+R+PL++F VDCRPK+QV AGRFPTA+HLDPS+M+NPEEMAEKIM FEPLR RAHVCL+GSGDGHLRARG G G IGSQRAARD+YSYVNTCALFFVKRGFP+VSVLEG
Sbjct: 718 QRQPLAFFAVDCRPKQQVDAGRFPTAYHLDPSAMENPEEMAEKIMPVFEPLRKRAHVCLIGSGDGHLRARGL---AGGNGHQVGGGIGSQRAARDDYSYVNTCALFFVKRGFPYVSVLEG 834
BLAST of mRNA_H-elongata_contig82939.15932.1 vs. uniprot
Match: K8YQB7_NANGC (Tbc1 domain family member 23-like protein (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQB7_NANGC) HSP 1 Score: 98.6 bits (244), Expect = 7.970e-22 Identity = 51/127 (40.16%), Postives = 77/127 (60.63%), Query Frame = 1
Query: 1 RREPLSYFVVDCRPKEQVKAGRFPTAFHLDPSSMDNPEEMAEKIMLDFEPLRGRAHVCLVGSGDGHLRARGSWVQTMGGKDDGAGAIGSQR-------AARDEYSYVNTCALFFVKRGFPFVSVLEG 360
R L Y +DCRPKE V GRFPTA+H+DPS +D+PEE+ +++ EP +G H+ L+G+G + G + + G GA +QR A R + +++T ALF +K+GFP+VS+L+G
Sbjct: 108 RLSSLRYLALDCRPKEHVAMGRFPTAYHVDPSRLDDPEEIT-RLLATLEPFKGSRHLLLMGTG----ASGGGLAPAVPKEGGGKGATPAQRFKEHMALAERQDMGHLHTAALFLLKQGFPYVSLLQG 229
BLAST of mRNA_H-elongata_contig82939.15932.1 vs. uniprot
Match: W7U2B4_9STRA (Tbc1 domain family member 23 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2B4_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 1.500e-21 Identity = 51/127 (40.16%), Postives = 77/127 (60.63%), Query Frame = 1
Query: 1 RREPLSYFVVDCRPKEQVKAGRFPTAFHLDPSSMDNPEEMAEKIMLDFEPLRGRAHVCLVGSGDGHLRARGSWVQTMGGKDDGAGAIGSQR-------AARDEYSYVNTCALFFVKRGFPFVSVLEG 360
R L Y +DCRPKE V GRFPTA+H+DPS +D+PEE+ +++ EP +G H+ L+G+G + G + + G GA +QR A R + +++T ALF +K+GFP+VS+L+G
Sbjct: 602 RLSSLRYLALDCRPKEHVAMGRFPTAYHVDPSRLDDPEEIT-RLLATLEPFKGSRHLLLMGTG----ASGGGLAPAVPKEGGGKGATPAQRFKEHMALAERQDMGHLHTAALFLLKQGFPYVSLLQG 723
BLAST of mRNA_H-elongata_contig82939.15932.1 vs. uniprot
Match: A0A4D9DAX1_9STRA (Rhodanese domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAX1_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 5.270e-21 Identity = 50/127 (39.37%), Postives = 76/127 (59.84%), Query Frame = 1
Query: 1 RREPLSYFVVDCRPKEQVKAGRFPTAFHLDPSSMDNPEEMAEKIMLDFEPLRGRAHVCLVGSGDGHLRARGSWVQTMGGKDDGAGAIGSQR-------AARDEYSYVNTCALFFVKRGFPFVSVLEG 360
R L Y +DCRPKE V GRFPTA+H+DP +D+PEE+ +++ EP +G H+ L+G+G + G + + G GA +QR A R + +++T ALF +K+GFP+VS+L+G
Sbjct: 1033 RLSSLRYLALDCRPKEHVAMGRFPTAYHVDPGRLDDPEEIT-RLLATLEPFKGSRHLLLMGTG----ASGGGLAPAVPKEGGGKGATPAQRFKEHMALAERQDMGHLHTAALFLLKQGFPYVSLLQG 1154
BLAST of mRNA_H-elongata_contig82939.15932.1 vs. uniprot
Match: A0A067CAD9_SAPPC (TBC1 domain family member 23 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CAD9_SAPPC) HSP 1 Score: 84.0 bits (206), Expect = 2.000e-16 Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = 1
Query: 7 EPLSYFVVDCRPKEQVKAGRFPTAFHLDPSSMDNPEEMAEKIMLDFEPLRGRAHVCLVGSGDGHLRARGSWVQTMG-GKDDGAGAIGSQRAARDEYSYVNTCALFFVKRGFPFVSVLEG 360
E + YF+VDCRP+E + G+ PT+FH + S+ NP + +M +P++ H+C++G G H R S V+ + K D A + A VN +F KRGFP+VS+++G
Sbjct: 675 EKIRYFIVDCRPQEYLAHGQIPTSFHFNSESLMNPSAF-DAVMATLQPMKSSVHICIMGHG--HSRYASSMVKDLNLSKSDVADMVAKDAAQ------VNDAVMFLTKRGFPYVSIIDG 784
BLAST of mRNA_H-elongata_contig82939.15932.1 vs. uniprot
Match: A0A1W0A934_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A934_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 3.770e-16 Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = 1
Query: 7 EPLSYFVVDCRPKEQVKAGRFPTAFHLDPSSMDNPEEMAEKIMLDFEPLRGRAHVCLVGSGDGHLRARGSWVQTMG-GKDDGAGAIGSQRAARDEYSYVNTCALFFVKRGFPFVSVLEG 360
E + YF+VDCRP+E + GR PT+FH + S+ +P + +M EP++ H+C++G G H R S V+ + K D A I A +N +F K+GFP+VS+++G
Sbjct: 1025 EKIRYFIVDCRPQESLALGRIPTSFHFNSESLLDPAAF-DTVMATLEPMKSSVHICIMGHG--HSRYASSMVKDLNYNKSDVADMIAKDAAQ------INDTVMFLTKKGFPYVSIIDG 1134
BLAST of mRNA_H-elongata_contig82939.15932.1 vs. uniprot
Match: B8C1V7_THAPS (Rhodanese domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1V7_THAPS) HSP 1 Score: 82.8 bits (203), Expect = 5.170e-16 Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 1
Query: 13 LSYFVVDCRPKEQVKA-GRFPTAFHLDPSSMDNPEEMAEKIMLDFEPLRGRAHVCLVGSGDGHLRARGSWVQTMGGKDDGAGAIGSQRAARDEYSYVNTCALFFVKRGFPFVSVLEG 360
L ++++DCRP+ K GRFPTA ++ P + +P+E+ +K++ FE LRG H+C++G G A T ++ ++ S + CALFF+K+GFPFVSVL G
Sbjct: 1037 LKFYLIDCRPESIAKEQGRFPTAVNMSPQKLQDPDEV-QKLLDMFEALRGAVHICIMGEGFASFPALYDHPLTAE----------EEKLLDEDVSRTSNCALFFLKKGFPFVSVLRG 1142
BLAST of mRNA_H-elongata_contig82939.15932.1 vs. uniprot
Match: A0A1V9ZSV3_9STRA (Rhodanese domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSV3_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 9.470e-16 Identity = 40/119 (33.61%), Postives = 65/119 (54.62%), Query Frame = 1
Query: 7 EPLSYFVVDCRPKEQVKAGRFPTAFHLDPSSMDNPEEMAEKIMLDFEPLRGRAHVCLVGSGDGHLRARGSWVQTMG-GKDDGAGAIGSQRAARDEYSYVNTCALFFVKRGFPFVSVLEG 360
E + YF+VDCRP+E + G PT+FH + S+ +P + +M +P++ H+C++G G H R S V+ + K D A + A +N +F KRGFP+VS+++G
Sbjct: 692 EKIRYFIVDCRPRESIALGTIPTSFHFNSESVMDPAAF-DAVMATLQPMKNSVHICIMGHG--HARYAASMVKDLNFAKSDVADMVAKDAAQ------INDAVMFLTKRGFPYVSIVDG 801
BLAST of mRNA_H-elongata_contig82939.15932.1 vs. uniprot
Match: A0A7S1ZR35_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZR35_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 2.380e-15 Identity = 42/117 (35.90%), Postives = 70/117 (59.83%), Query Frame = 1
Query: 13 LSYFVVDCRPKEQVKA-GRFPTAFHLDPSSMDNPEEMAEKIMLDFEPLRGRAHVCLVGSGDGHLRARGSWVQTMGGKDDGAGAIGSQRAARDEYSYVNTCALFFVKRGFPFVSVLEG 360
+ ++++D RP E K GRFPT+ L P +M +P+++ +++ + FE LRG H+C++G G A + + KD+ A D+ + + CALFF+K+GFPFVS+L+G
Sbjct: 312 IKFYLIDSRPDESAKEQGRFPTSISLSPEAMMDPDKVQQQLDM-FESLRGAVHICVMGEGFSKFPA----LYGLKLKDE------EMAHAEDDEARTSMCALFFIKKGFPFVSILDG 417
BLAST of mRNA_H-elongata_contig82939.15932.1 vs. uniprot
Match: A0A1E7EUG7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUG7_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 2.390e-15 Identity = 47/120 (39.17%), Postives = 65/120 (54.17%), Query Frame = 1
Query: 4 REPLSYFVVDCRPKEQVKA-GRFPTAFHLDPSSMDNPEEMAEKIMLDFEPLRGRAHVCLVGSGDGHLRARGSWVQTMGGKDDGAGAIGSQRAARDEYSYVNTCALFFVKRGFPFVSVLEG 360
R PL ++VVD RP+ + GRFPT+ L P +D+ +M E+ ++ FE LRG H+C++G G L T G R++ N CALFF+ RGFPFVS+LEG
Sbjct: 742 RMPLKFYVVDSRPEAAAQEQGRFPTSLSLSPEKLDDINKMKEEEIM-FESLRGSVHICIMGEGYASLPRLYGHKMTNG----------LAEFIREDDLRNNKCALFFLSRGFPFVSILEG 850 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82939.15932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig82939.15932.1 >prot_H-elongata_contig82939.15932.1 ID=prot_H-elongata_contig82939.15932.1|Name=mRNA_H-elongata_contig82939.15932.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp RREPLSYFVVDCRPKEQVKAGRFPTAFHLDPSSMDNPEEMAEKIMLDFEPback to top mRNA from alignment at H-elongata_contig82939:1557..2753+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig82939.15932.1 ID=mRNA_H-elongata_contig82939.15932.1|Name=mRNA_H-elongata_contig82939.15932.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1197bp|location=Sequence derived from alignment at H-elongata_contig82939:1557..2753+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig82939:1557..2753+ >mRNA_H-elongata_contig82939.15932.1 ID=mRNA_H-elongata_contig82939.15932.1|Name=mRNA_H-elongata_contig82939.15932.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig82939:1557..2753+ (Himanthalia elongata Himel1 dioecious)back to top |