mRNA_H-elongata_contig82936.15931.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig82936.15931.1 vs. uniprot
Match: D8LQ95_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ95_ECTSI) HSP 1 Score: 233 bits (594), Expect = 5.450e-74 Identity = 108/172 (62.79%), Postives = 134/172 (77.91%), Query Frame = 1
Query: 1 PPDARSWPLGPVLFYLGRYDEAIARLETDIRCFEKRFEESATDERIWLAAAKLRGARVSRGHADAVRVAEGLPPLPIPDLNPVRRIIYKMFRGKASPEEVRDASKLPTEGIDYLGVEFFSKVFLGLWYDAHGNELEAKNCVLEACRSRYPQPDDLWYHTPRVHARARGWELP 516
PP AR+WPLG +L+YLGRY+EA RL+TDIR FEK+FEE ATDERIW AAA +RGAR AD +VA LPPLPI + N +RR +Y MFRG +PE+V+ +K+ GIDY GV+FFS+VFLGL++DAHGNELEA+ +L AC + YP PDDLWYHTPR+HA+AR W +P
Sbjct: 129 PPSARTWPLGVILYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAR--EAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGPTPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNWTIP 298
BLAST of mRNA_H-elongata_contig82936.15931.1 vs. uniprot
Match: A0A7S2Y0Z0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0Z0_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 3.860e-10 Identity = 48/155 (30.97%), Postives = 79/155 (50.97%), Query Frame = 1
Query: 28 GPVLFYLGRYDEAIARLETDIRCFEKRFEESATDERIW-LAAAKLRGARVSRGHADAVRVAEGLPPLPIPDLNPVRRIIYKMFRGKASPEEVRDASKLPT-EGIDYLGVEFFSKVFLGLWYDAHGNELEAK----NCVLEACRSRYPQPDDLWYH 474
G +LF G+Y++A+ + D +E RFE+S T+E IW LA K G V+ + +P L + + V +YK+F G+ S +V +A K+ ++YLG + +LGLW+++ GN +AK NC + D+WY+
Sbjct: 112 GVLLFLTGKYEDALKQFNRDKELWETRFEDSGTEEAIWILACMKRMGMEVT---------PDKVPRLELEENRVVFNAMYKLFAGEDSEAQVIEAVKVKQGTSLEYLG-----QYYLGLWHESLGNVEQAKAYYQNCFENPGLDKN---QDIWYY 249
BLAST of mRNA_H-elongata_contig82936.15931.1 vs. uniprot
Match: A0A351L1W0_9CYAN (Uncharacterized protein n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A351L1W0_9CYAN) HSP 1 Score: 59.7 bits (143), Expect = 1.090e-7 Identity = 50/166 (30.12%), Postives = 78/166 (46.99%), Query Frame = 1
Query: 19 WPLGPVLFYLGRYDEAIARLETDIRCFEKRFEESATDERIW--LAAAKLRGARVSRGHADAVRVAEGLPPLPIPDLNPVRRIIYKMFRGKASPEEVRDASKLPTEGIDYLGVEFFSKVFLGLWYDAHGNELEAKNCVLEACRSRYPQPDDLWYHTPRVHARARGWE 510
W G +Y GR++ + E D+ + EE+ +W L A+L GA +R + V + P L V R +Y++F G +P++V A K EG F+S ++LGL+Y+A N AK ++ A + R DD +H VH RGW+
Sbjct: 63 WQRGLSYYYSGRFEAGAKQFEIDLTVNAQDVEET-----VWRYLCQARLIGASDARKQ---LLVVKNDPRL-------VMRQVYELFAGSCTPDDVLVAGK--KEG---KRGNFYSYLYLGLYYEAQSNAELAKEYIVTASQYRL---DDYMWHLACVHQVLRGWD 205
BLAST of mRNA_H-elongata_contig82936.15931.1 vs. uniprot
Match: A4RV00_OSTLU (Uncharacterized protein (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RV00_OSTLU) HSP 1 Score: 59.3 bits (142), Expect = 1.280e-7 Identity = 45/167 (26.95%), Postives = 74/167 (44.31%), Query Frame = 1
Query: 10 ARSWPLGPVLFYLGRYDEAIARLETDIRCFEKRFEESATDERIWLAAAKLRGARVSRGHADAVRVAEGLPPLPIPDLNPVRRIIYKMFRGKASPEEVRDASKLPTEGIDYLGVEFFSKVFLGLWYDAHGNELEAKNCVLEACRSRYPQ-PDDLWYHTPRVHARARGW 507
A W G L+Y G Y+EA + D+ + T+E +W A++ +A + G D PV ++ +F + S E A++L G EF+S ++LGL+Y+ +G+E A+ + A R+ Y + D RVHA+ R W
Sbjct: 50 AYMWQRGLALYYAGAYEEAAKQFRLDVAQ-----NPNDTEESVWCFASEAMDPEKGIAYARENMLITGR------DSRPVMSSVFALF-AEGSEEA---ATRLREAGRSNASDEFYSALYLGLFYEINGDEERARREIERANRTAYARLSGDYMTDVARVHAKTRSW 201
BLAST of mRNA_H-elongata_contig82936.15931.1 vs. uniprot
Match: A0A7S1D5S8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5S8_CYCTE) HSP 1 Score: 59.7 bits (143), Expect = 2.730e-7 Identity = 61/201 (30.35%), Postives = 90/201 (44.78%), Query Frame = 1
Query: 4 PDARSWPLGPVLFYLGRYDEAIARLETDIRC---FEKRFEESATDERIWLAAAKLR-------GARVSRGHADAVRVAEGLPPLPI--PDLNPVR-------RIIYKMFRGKASPEE---VRDASKLPTEG---------IDYLGVEFFSKVFLGLWYDAHGNELEAKNCVLEACRS-RYPQPDDLWYHT-PRVHARARGW 507
P W G V +YLG Y A E RC FE RFEE A++ERIW +A +L+ + D ++AE + P + P+ +P+ RI +F + +E + +KL + G + Y +E S +LGL+YDA G+E EAK C+ A R+ Y + H P +H R W
Sbjct: 120 PQKYLWQAGIVFYYLGDYKRAS---EIFARCGQRFETRFEEYASEERIWRSACELKYLSQLDSSSERQALMEDRDKLAEHIQPFYVRHPESDPLEGERRKVIRIARNLFESTTNNDESAVLLARAKLRSIGGKGKTLLPDLKYFKLE--SWYYLGLYYDAIGDEEEAKKCMKVALRTCPYGSWETNMVHAFPYIHMVVRDW 315
BLAST of mRNA_H-elongata_contig82936.15931.1 vs. uniprot
Match: A0A1Z4UIW1_9CYAN (Uncharacterized protein n=7 Tax=Sphaerospermopsis TaxID=752201 RepID=A0A1Z4UIW1_9CYAN) HSP 1 Score: 57.4 bits (137), Expect = 6.820e-7 Identity = 46/165 (27.88%), Postives = 76/165 (46.06%), Query Frame = 1
Query: 19 WPLGPVLFYLGRYDEAIARLETDIRCFEKRFEESATDERIW--LAAAKLRGARVSRGHADAVRVAEGLPPLPIPDLNPVRRIIYKMFRGKASPEEVRDASKLPTEGIDYLGVEFFSKVFLGLWYDAHGNELEAKNCVLEACRSRYPQPDDLWYHTPRVHARARGW 507
W G +Y R+ E + E D+ + EE+ +W L A+L G +R V+ D + R +Y +F G + ++V K +EG L F+S ++LGL+Y+A GNE AK +++A ++ D +WY + VH + GW
Sbjct: 63 WQRGLSYYYAERFAEGAKQFEIDLTVNAQDVEET-----VWRYLCIARLSGVGEARNSLLPVKN----------DPRKIMRCVYDLFAGNCTTDDVLIVGK--SEG---LKGNFYSHLYLGLYYEAEGNEELAKEYIVKAA-DKFKIDDYMWYLSV-VHKQVSGW 205
BLAST of mRNA_H-elongata_contig82936.15931.1 vs. uniprot
Match: A0A6P0ZH85_9CYAN (Uncharacterized protein n=2 Tax=unclassified Sphaerospermopsis TaxID=2646443 RepID=A0A6P0ZH85_9CYAN) HSP 1 Score: 57.4 bits (137), Expect = 6.820e-7 Identity = 45/165 (27.27%), Postives = 72/165 (43.64%), Query Frame = 1
Query: 19 WPLGPVLFYLGRYDEAIARLETDIRCFEKRFEESATDERIW--LAAAKLRGARVSRGHADAVRVAEGLPPLPIPDLNPVRRIIYKMFRGKASPEEVRDASKLPTEGIDYLGVEFFSKVFLGLWYDAHGNELEAKNCVLEACRSRYPQPDDLWYHTPRVHARARGW 507
W G +Y R+ E + E D+ + EE+ +W L A+L G + V+ D + R +Y +F G + ++V + KL L F+S ++LGL+Y+A GN AK +++A Y D +WY VH + RGW
Sbjct: 63 WQRGLSYYYAERFTEGAKQFEIDLTVNPQDVEET-----VWRYLCIARLSGVEEANNSLLTVKN----------DPRKIMRSVYDLFAGNCTNDDVLNVGKLAG-----LKGNFYSHLYLGLYYEAEGNFELAKEYIVKAA-DNYKIDDYMWYLAV-VHKQVRGW 205
BLAST of mRNA_H-elongata_contig82936.15931.1 vs. uniprot
Match: A0A1Z4KZD3_NOSLI (Uncharacterized protein n=6 Tax=Nostoc TaxID=1177 RepID=A0A1Z4KZD3_NOSLI) HSP 1 Score: 56.6 bits (135), Expect = 1.300e-6 Identity = 45/165 (27.27%), Postives = 76/165 (46.06%), Query Frame = 1
Query: 19 WPLGPVLFYLGRYDEAIARLETDIRCFEKRFEESATDERIW--LAAAKLRGARVSRGHADAVRVAEGLPPLPIPDLNPVRRIIYKMFRGKASPEEVRDASKLPTEGIDYLGVEFFSKVFLGLWYDAHGNELEAKNCVLEACRSRYPQPDDLWYHTPRVHARARGW 507
W G +Y R+ E + E D+ + EE+ +W L A+L G +R ++ D V R +Y ++ G +P++V + +EGI+ F+S ++LGL+Y+A N AK +++A Y D +WY +VH + RGW
Sbjct: 63 WQRGLSYYYAERFAEGAQQFEIDLTVNAQDVEET-----VWRYLCIARLSGVEEARNSLLTLKN----------DPRRVMRCVYDLYAGDCTPDDVLNVGI--SEGING---NFYSHLYLGLYYEAENNLDLAKEYIVKAA-DNYKIDDYMWY-LAQVHKKLRGW 205
BLAST of mRNA_H-elongata_contig82936.15931.1 vs. uniprot
Match: A0A6H1U3M6_9CYAN (Uncharacterized protein n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A6H1U3M6_9CYAN) HSP 1 Score: 55.5 bits (132), Expect = 3.490e-6 Identity = 45/163 (27.61%), Postives = 79/163 (48.47%), Query Frame = 1
Query: 19 WPLGPVLFYLGRYDEAIARLETDIRCFEKRFEESATDERIWLAAAKLRGARVSRGHADAVRVAEGLPPLPIPDLNPVRRIIYKMFRGKASPEEVRDASKLPTEGIDYLGVEFFSKVFLGLWYDAHGNELEAKNCVLEACRSRYPQPDDLWYHTPRVHARARGW 507
W G L+Y+ ++ + E+ + EE+ +L A+L G + +R E L P+ D P IY ++ GK +P ++ AS EG D +F+++++LGL+Y+ H + A+ ++ A R+ Y Q + +WY VH + RGW
Sbjct: 63 WQRGLSLYYVEDFEGGARQFESGLTVNPADVEETTWR---YLCLARLHGPQFAR---------ESLLPVGR-DPRPFMHRIYALYAGKQTPADLLAAS----EGEDSRS-QFYTQLYLGLYYEVHDDGDRARRYIISATRN-YMQREYMWY-LACVHQQLRGW 205
BLAST of mRNA_H-elongata_contig82936.15931.1 vs. uniprot
Match: A0A480A8M2_9CYAN (Uncharacterized protein n=7 Tax=Nostocales TaxID=1161 RepID=A0A480A8M2_9CYAN) HSP 1 Score: 55.1 bits (131), Expect = 4.710e-6 Identity = 45/165 (27.27%), Postives = 70/165 (42.42%), Query Frame = 1
Query: 19 WPLGPVLFYLGRYDEAIARLETDIRCFEKRFEESATDERIW--LAAAKLRGARVSRGHADAVRVAEGLPPLPIPDLNPVRRIIYKMFRGKASPEEVRDASKLPTEGIDYLGVEFFSKVFLGLWYDAHGNELEAKNCVLEACRSRYPQPDDLWYHTPRVHARARGW 507
W G +Y R+ + + E D+ + EE+ +W L A+L G +R V+ D + R+IY F G S ++V + KL L F+S ++LGL+Y+A N A+ +L+A Y D +WY VH R W
Sbjct: 63 WQRGLSYYYAERFSQGAKQFEIDLTVNSQDVEET-----VWRYLCMARLSGVTEARNSLLPVKN----------DSRKIMRVIYDFFAGNCSKDDVLNVGKLSG-----LKGNFYSHLYLGLYYEAENNLDLAREYILKAA-DEYKIDDYMWYLAV-VHKNLRKW 205 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82936.15931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig82936.15931.1 >prot_H-elongata_contig82936.15931.1 ID=prot_H-elongata_contig82936.15931.1|Name=mRNA_H-elongata_contig82936.15931.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp PPDARSWPLGPVLFYLGRYDEAIARLETDIRCFEKRFEESATDERIWLAAback to top mRNA from alignment at H-elongata_contig82936:159..2059- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig82936.15931.1 ID=mRNA_H-elongata_contig82936.15931.1|Name=mRNA_H-elongata_contig82936.15931.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1901bp|location=Sequence derived from alignment at H-elongata_contig82936:159..2059- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig82936:159..2059- >mRNA_H-elongata_contig82936.15931.1 ID=mRNA_H-elongata_contig82936.15931.1|Name=mRNA_H-elongata_contig82936.15931.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig82936:159..2059- (Himanthalia elongata Himel1 dioecious)back to top |