mRNA_H-elongata_contig82923.15930.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82923.15930.1
Unique NamemRNA_H-elongata_contig82923.15930.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig82923.15930.1 vs. uniprot
Match: D7FVH1_ECTSI (FERM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH1_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 3.950e-35
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:    7 RPMYGSHFFYSLKVQCVPDLLSTLPNNLLLSFNADGMHIFSVDKKELLQQYSYADVHSW 183
            RPMYGSHFFYSLKVQCVPDLLS LPNNLLL+FNADGMHIFSVDKKELLQQYSYADVHSW
Sbjct:   49 RPMYGSHFFYSLKVQCVPDLLSNLPNNLLLAFNADGMHIFSVDKKELLQQYSYADVHSW 107
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BLAST of mRNA_H-elongata_contig82923.15930.1 vs. uniprot
Match: A0A6H5JBI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBI4_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 8.880e-32
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:    7 RPMYGSHFFYSLKVQCVPDLLSTLPNNLLLSFNADGMHIFSVDKKELLQQYSYADVHSW 183
            RPMYGSHFFYSLKVQCVPDLLS LPNNLLL+FNADGMHIFSVDKKELLQQYSYADVHSW
Sbjct: 1556 RPMYGSHFFYSLKVQCVPDLLSNLPNNLLLAFNADGMHIFSVDKKELLQQYSYADVHSW 1614
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BLAST of mRNA_H-elongata_contig82923.15930.1 vs. uniprot
Match: A0A835Z3M9_9STRA (FERM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3M9_9STRA)

HSP 1 Score: 112 bits (279), Expect = 6.980e-30
Identity = 49/59 (83.05%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    7 RPMYGSHFFYSLKVQCVPDLLSTLPNNLLLSFNADGMHIFSVDKKELLQQYSYADVHSW 183
            RPMYGSHFFY+ KVQCVPDL++ LP  LLL+FNADGMHIFSV++KELLQQYSYADVHSW
Sbjct:   69 RPMYGSHFFYATKVQCVPDLMANLPKQLLLAFNADGMHIFSVNRKELLQQYSYADVHSW 127
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BLAST of mRNA_H-elongata_contig82923.15930.1 vs. uniprot
Match: A0A835YPP0_9STRA (Myosin I, high molecular weight-Acanthamoeba sp n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPP0_9STRA)

HSP 1 Score: 105 bits (262), Expect = 5.050e-25
Identity = 44/59 (74.58%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    7 RPMYGSHFFYSLKVQCVPDLLSTLPNNLLLSFNADGMHIFSVDKKELLQQYSYADVHSW 183
            RPMYGSHFFY+ KVQCVPDL+S LP  LLL+FNADGM IF++++K++LQQY+YADVHSW
Sbjct: 1635 RPMYGSHFFYATKVQCVPDLMSNLPKQLLLAFNADGMQIFNINRKDMLQQYTYADVHSW 1693
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BLAST of mRNA_H-elongata_contig82923.15930.1 vs. uniprot
Match: A0A482S091_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S091_9ARCH)

HSP 1 Score: 59.3 bits (142), Expect = 8.940e-9
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:   13 MYGSHFFYSLKVQC-----VPDLLSTLPNNLLLSFNADGMHIFSVDKKELLQQYSYADVHSW 183
            MYGSH+FY+ K++      +P  +  LP NLLL FNA+GMHIF  +K+ LL  + Y+D+  W
Sbjct:  471 MYGSHWFYAHKMEPQSLVGIPRAIQQLPYNLLLGFNAEGMHIFDFNKRTLLS-FPYSDICRW 531
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BLAST of mRNA_H-elongata_contig82923.15930.1 vs. uniprot
Match: A0A7R9YCQ4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCQ4_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.170e-9
Identity = 23/60 (38.33%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    7 RPMYGSHFFYSLKVQCVPDLLSTLPNNLLLSFNADGMHIFSVDK-KELLQQYSYADVHSW 183
             P YG+H+FY  +V   P++++ +P +L++ FNADGMHI    + +  L  + YAD++ W
Sbjct:  164 HPYYGAHWFYCHRVNDQPEIVAAMPRDLVIGFNADGMHILDAGEGRAALATFGYADIYRW 223
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BLAST of mRNA_H-elongata_contig82923.15930.1 vs. uniprot
Match: A0A7R9YD73_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD73_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.240e-8
Identity = 23/60 (38.33%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    7 RPMYGSHFFYSLKVQCVPDLLSTLPNNLLLSFNADGMHIFSVDK-KELLQQYSYADVHSW 183
             P YG+H+FY  +V   P++++ +P +L++ FNADGMHI    + +  L  + YAD++ W
Sbjct: 1100 HPYYGAHWFYCHRVNDQPEIVAAMPRDLVIGFNADGMHILDAGEGRAALATFGYADIYRW 1159
[Close]
BLAST of mRNA_H-elongata_contig82923.15930.1 vs. uniprot
Match: A0A7S3HK87_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HK87_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.100e-7
Identity = 26/63 (41.27%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   10 PMYGSHFFYSLKVQC-----VPDLLSTLPNNLLLSFNADGMHIFSVDKKELLQQYSYADVHSW 183
            P YGSH+FY+ K++      +P  +  LP +L+L+FNA+GMHI++  +K LL  + Y+D+  W
Sbjct:  565 PAYGSHWFYAHKMEPTSISGIPQNIRQLPTDLILAFNAEGMHIYTFSRK-LLLSFPYSDICRW 626
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82923.15930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FVH1_ECTSI3.950e-3596.61FERM domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JBI4_9PHAE8.880e-3296.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z3M9_9STRA6.980e-3083.05FERM domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YPP0_9STRA5.050e-2574.58Myosin I, high molecular weight-Acanthamoeba sp n=... [more]
A0A482S091_9ARCH8.940e-946.77Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7R9YCQ4_9STRA9.170e-938.33Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7R9YD73_9STRA1.240e-838.33Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3HK87_9STRA1.100e-741.27Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82923contigH-elongata_contig82923:1030..1212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size183
Cds size171
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931236.269894-UTR-H-elongata_contig82923:1029..10411622931236.269894-UTR-H-elongata_contig82923:1029..1041Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82923 1030..1041 +
1691679753.9446766-UTR-H-elongata_contig82923:1029..10411691679753.9446766-UTR-H-elongata_contig82923:1029..1041Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82923 1030..1041 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931236.2878969-CDS-H-elongata_contig82923:1041..12121622931236.2878969-CDS-H-elongata_contig82923:1041..1212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82923 1042..1212 +
1691679753.953508-CDS-H-elongata_contig82923:1041..12121691679753.953508-CDS-H-elongata_contig82923:1041..1212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82923 1042..1212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82923.15930.1prot_H-elongata_contig82923.15930.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82923 1042..1212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82923.15930.1

>prot_H-elongata_contig82923.15930.1 ID=prot_H-elongata_contig82923.15930.1|Name=mRNA_H-elongata_contig82923.15930.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MYGSHFFYSLKVQCVPDLLSTLPNNLLLSFNADGMHIFSVDKKELLQQYS
YADVHSW
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mRNA from alignment at H-elongata_contig82923:1030..1212+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82923.15930.1 ID=mRNA_H-elongata_contig82923.15930.1|Name=mRNA_H-elongata_contig82923.15930.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig82923:1030..1212+ (Himanthalia elongata Himel1 dioecious)
GTTGGCAGGCCCATGTACGGCAGCCACTTCTTCTACAGCCTCAAGGTGCA
GTGCGTGCCGGATCTCTTGTCGACCCTCCCCAACAACCTGTTGCTTTCCT
TCAACGCGGACGGGATGCACATCTTCAGCGTAGACAAGAAGGAGCTGCTG
CAGCAGTACAGCTACGCCGACGTACACTCATGG
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Coding sequence (CDS) from alignment at H-elongata_contig82923:1030..1212+

>mRNA_H-elongata_contig82923.15930.1 ID=mRNA_H-elongata_contig82923.15930.1|Name=mRNA_H-elongata_contig82923.15930.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig82923:1030..1212+ (Himanthalia elongata Himel1 dioecious)
ATGTACGGCAGCCACTTCTTCTACAGCCTCAAGGTGCAGTGCGTGCCGGA
TCTCTTGTCGACCCTCCCCAACAACCTGTTGCTTTCCTTCAACGCGGACG
GGATGCACATCTTCAGCGTAGACAAGAAGGAGCTGCTGCAGCAGTACAGC
TACGCCGACGTACACTCATGGATGTACGGCAGCCACTTCTTCTACAGCCT
CAAGGTGCAGTGCGTGCCGGATCTCTTGTCGACCCTCCCCAACAACCTGT
TGCTTTCCTTCAACGCGGACGGGATGCACATCTTCAGCGTAGACAAGAAG
GAGCTGCTGCAGCAGTACAGCTACGCCGACGTACACTCATGG
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