mRNA_H-elongata_contig82907.15928.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82907.15928.1
Unique NamemRNA_H-elongata_contig82907.15928.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig82907.15928.1 vs. uniprot
Match: D7FIB3_ECTSI (Eukaryotic peptide chain release factor subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIB3_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.820e-34
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 RLEVRNNSTGEEKVLHLTPEQENNDTHFHDSETGVELEVKDKQSLVEWIANNYKNFGAALEFVTNR 198
            RLEVRNNSTGEEKVLHLTPEQENNDTHFHD+ETGVELEV DKQSLVEWIANNYKNFGAALEF+TNR
Sbjct:  334 RLEVRNNSTGEEKVLHLTPEQENNDTHFHDTETGVELEVTDKQSLVEWIANNYKNFGAALEFITNR 399
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BLAST of mRNA_H-elongata_contig82907.15928.1 vs. uniprot
Match: A0A836CQL8_9STRA (Eukaryotic peptide chain release factor subunit 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQL8_9STRA)

HSP 1 Score: 102 bits (255), Expect = 3.990e-24
Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 RLEVRNNSTGEEKVLHLTPEQENNDTHFHDSETGVELEVKDKQSLVEWIANNYKNFGAALEFVTNR 198
            R  +RNN+T EEKVLHLTPEQE N++HF D ETG ELE  DK +LVEWIANNYKNFGA LEFVTNR
Sbjct:  336 RYTLRNNTTQEEKVLHLTPEQERNESHFRDGETGAELETIDKIALVEWIANNYKNFGATLEFVTNR 401
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BLAST of mRNA_H-elongata_contig82907.15928.1 vs. uniprot
Match: A0A7S3MEB0_9STRA (Eukaryotic peptide chain release factor subunit 1 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MEB0_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.840e-23
Identity = 47/66 (71.21%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 RLEVRNNSTGEEKVLHLTPEQENNDTHFHDSETGVELEVKDKQSLVEWIANNYKNFGAALEFVTNR 198
            RL VRN ST EE VLHLTP+QE ND+HFHD  TGV+LE+ D+Q+LVEW+ANNYK+FGA LEF+T+R
Sbjct:  331 RLVVRNVSTSEESVLHLTPDQERNDSHFHDPVTGVQLEIIDRQTLVEWLANNYKSFGAKLEFITDR 396
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BLAST of mRNA_H-elongata_contig82907.15928.1 vs. uniprot
Match: A0A7S2XTC3_9STRA (Eukaryotic peptide chain release factor subunit 1 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTC3_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 9.900e-23
Identity = 47/66 (71.21%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 RLEVRNNSTGEEKVLHLTPEQENNDTHFHDSETGVELEVKDKQSLVEWIANNYKNFGAALEFVTNR 198
            R  VRN +T EE +LHLT EQE NDT FHD ETGVELEV +K+S+VEW+ANNYKNFG  LEFVT+R
Sbjct:  189 RYVVRNTATSEESILHLTAEQEANDTFFHDKETGVELEVVEKESMVEWMANNYKNFGCNLEFVTDR 254
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BLAST of mRNA_H-elongata_contig82907.15928.1 vs. uniprot
Match: A0A7S2UVJ2_9STRA (Eukaryotic peptide chain release factor subunit 1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVJ2_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 5.020e-22
Identity = 48/66 (72.73%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 RLEVRNNSTGEEKVLHLTPEQENNDTHFHDSETGVELEVKDKQSLVEWIANNYKNFGAALEFVTNR 198
            RL +RNNST EEKVL LTP+QE N +HFHD ETGVELE  +K  LVEW ANNYK FG  LEFVTNR
Sbjct:  326 RLVLRNNSTQEEKVLFLTPDQEQNASHFHDPETGVELETIEKMPLVEWFANNYKKFGTTLEFVTNR 391
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BLAST of mRNA_H-elongata_contig82907.15928.1 vs. uniprot
Match: A0A7S2LGT6_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LGT6_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.590e-21
Identity = 43/66 (65.15%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 RLEVRNNSTGEEKVLHLTPEQENNDTHFHDSETGVELEVKDKQSLVEWIANNYKNFGAALEFVTNR 198
            R  +RN+STGE+KV+HLT EQE N+T FHD  TGVELEV +K+ +VEWIAN+YK++G  LEFVT+R
Sbjct:   22 RYVLRNSSTGEDKVVHLTKEQEANETFFHDEGTGVELEVVEKEQMVEWIANHYKDYGCNLEFVTDR 87
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BLAST of mRNA_H-elongata_contig82907.15928.1 vs. uniprot
Match: A0A6T8LW95_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8LW95_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.860e-21
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 RLEVRNNSTGEEKVLHLTPEQENNDTHFHDSETGVELEVKDKQSLVEWIANNYKNFGAALEFVTNR 198
            R E+RN ST E  ++HLT EQE ND  FHD+ETGVELEV +K+  VEW+ANNYK FG  LEFVT+R
Sbjct:   61 RFELRNTSTQETSIIHLTTEQEANDNFFHDTETGVELEVVEKEEFVEWMANNYKQFGCKLEFVTDR 126
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BLAST of mRNA_H-elongata_contig82907.15928.1 vs. uniprot
Match: A0A812U0R4_SYMMI (Eukaryotic peptide chain release factor subunit 1 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812U0R4_SYMMI)

HSP 1 Score: 93.6 bits (231), Expect = 9.550e-21
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 RLEVRNNSTGEEKVLHLTPEQENNDTHFHDSETGVELEVKDKQSLVEWIANNYKNFGAALEFVTNR 198
            R+ V+N ST +E VLHLTPEQE ND+HFHD  TGVELEV +K SLVEW+AN Y+ +GA LEFVT+R
Sbjct:  331 RITVKNTSTQQETVLHLTPEQEQNDSHFHDPVTGVELEVVEKISLVEWLANEYRKYGANLEFVTDR 396
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BLAST of mRNA_H-elongata_contig82907.15928.1 vs. uniprot
Match: E7D171_LATHE (Putative eukaryotic release factor 1 isoform 2 (Fragment) n=1 Tax=Latrodectus hesperus TaxID=256737 RepID=E7D171_LATHE)

HSP 1 Score: 87.0 bits (214), Expect = 1.460e-20
Identity = 41/66 (62.12%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 RLEVRNNSTGEEKVLHLTPEQENNDTHFHDSETGVELEVKDKQSLVEWIANNYKNFGAALEFVTNR 198
            R  ++N++T EEKVLHLTPEQE + THF D +TGVELE+ D   L+EW+ANNYK+FGA LE +T+R
Sbjct:    7 RYVLKNHTTDEEKVLHLTPEQEKDKTHFTDRDTGVELELIDSVPLLEWLANNYKSFGATLEIITDR 72
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BLAST of mRNA_H-elongata_contig82907.15928.1 vs. uniprot
Match: B7FU01_PHATC (Eukaryotic peptide chain release factor subunit 1 n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FU01_PHATC)

HSP 1 Score: 92.8 bits (229), Expect = 1.840e-20
Identity = 43/66 (65.15%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 RLEVRNNSTGEEKVLHLTPEQENNDTHFHDSETGVELEVKDKQSLVEWIANNYKNFGAALEFVTNR 198
            R  +RN +TGEEKV+HLT EQE++D+HF DSETG ELE  +K++ VEW+ANNYK+FG  LEFVT+R
Sbjct:  331 RYVLRNQTTGEEKVIHLTQEQESDDSHFRDSETGTELETVEKETFVEWMANNYKSFGCNLEFVTDR 396
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82907.15928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIB3_ECTSI1.820e-3495.45Eukaryotic peptide chain release factor subunit 1 ... [more]
A0A836CQL8_9STRA3.990e-2475.76Eukaryotic peptide chain release factor subunit 1 ... [more]
A0A7S3MEB0_9STRA2.840e-2371.21Eukaryotic peptide chain release factor subunit 1 ... [more]
A0A7S2XTC3_9STRA9.900e-2371.21Eukaryotic peptide chain release factor subunit 1 ... [more]
A0A7S2UVJ2_9STRA5.020e-2272.73Eukaryotic peptide chain release factor subunit 1 ... [more]
A0A7S2LGT6_9STRA1.590e-2165.15Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]
A0A6T8LW95_9STRA2.860e-2165.15Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A812U0R4_SYMMI9.550e-2168.18Eukaryotic peptide chain release factor subunit 1 ... [more]
E7D171_LATHE1.460e-2062.12Putative eukaryotic release factor 1 isoform 2 (Fr... [more]
B7FU01_PHATC1.840e-2065.15Eukaryotic peptide chain release factor subunit 1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82907contigH-elongata_contig82907:226..929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue8e-29
Seed eggNOG ortholog2880.D7FIB3
Preferred nameETF1
KEGG koko:K03265,ko:K04043
KEGG TC1.A.33.1
KEGG Pathwayko03015,ko03018,ko04212,ko05152,map03015,map03018,map04212,map05152
GOsGO:0000184,GO:0000956,GO:0002181,GO:0002184,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003747,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006401,GO:0006402,GO:0006412,GO:0006415,GO:0006417,GO:0006449,GO:0006464,GO:0006479,GO:0006518,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0008022,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0008213,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010605,GO:0010608,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016149,GO:0018130,GO:0018444,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0022411,GO:0023052,GO:0031323,GO:0031326,GO:0032259,GO:0032268,GO:0032774,GO:0032984,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035770,GO:0036211,GO:0036464,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043244,GO:0043412,GO:0043414,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051246,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990825,GO:1990904,GO:2000112
EggNOG free text desc.translation release factor activity
EggNOG OGsCOG1503@1,KOG0688@2759
Ec32 ortholog descriptioneukaryotic peptide chain release factor 1
Ec32 orthologEc-11_001250.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko03019,ko03029,ko03110,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931236.1342363-CDS-H-elongata_contig82907:225..3811622931236.1342363-CDS-H-elongata_contig82907:225..381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82907 226..381 -
1691679753.9097629-CDS-H-elongata_contig82907:225..3811691679753.9097629-CDS-H-elongata_contig82907:225..381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82907 226..381 -
1622931236.1529665-CDS-H-elongata_contig82907:866..9291622931236.1529665-CDS-H-elongata_contig82907:866..929Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82907 867..929 -
1691679753.926126-CDS-H-elongata_contig82907:866..9291691679753.926126-CDS-H-elongata_contig82907:866..929Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82907 867..929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82907.15928.1prot_H-elongata_contig82907.15928.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82907 226..929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82907.15928.1

>prot_H-elongata_contig82907.15928.1 ID=prot_H-elongata_contig82907.15928.1|Name=mRNA_H-elongata_contig82907.15928.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
RLEVRNNSTGEEKVLHLTPEQENNDTHFHDSETGVELEVKDKQSLVEWIA
NNYKNFGAALEFVTNRHVYRNL*
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mRNA from alignment at H-elongata_contig82907:226..929-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82907.15928.1 ID=mRNA_H-elongata_contig82907.15928.1|Name=mRNA_H-elongata_contig82907.15928.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=704bp|location=Sequence derived from alignment at H-elongata_contig82907:226..929- (Himanthalia elongata Himel1 dioecious)
AGACTGGAAGTACGGAACAACAGTACGGGGGAAGAAAAAGTGCTGCACCT
CACTCCGGAGCAGGTCAGTCCCATTTGCCGTAATATCAAACTGTCACGGA
ATCGTAATATGATTTATGTATGTCGTAATGGTGGTGTGATTAGATTAGCA
GACACCTCTTTTAATGTAGTATAATAGGAGGTGTGTGTATGTGTGTGTGT
GTGTGTATGTGTTTTATTAAATTGCAAATAACCGCGCAATCCGGCTCTGT
AATGCTAATCCTTCTAAGCTACTCTCGCATTGATCCTCCCAATCGGGGAT
TCAAGCATATTTCCTCAAAAACAAAGGAGACATAGTATATCTACAGTTCG
TATCTAAACCGTCAATACTTTGCGCTTCCTTTTCTACTTCCTTGCTCTCC
ATATAGCTTCGGTCGGCCCCTATATTGGACCATCTACCTTTTTTCTACTG
CTACCCAAGTGTGTGTGTGTGTTTTTTTTTTAATTGGTGTTCGGTCCAAC
GACATCAAGCGCTGTGAAATGCCGTGTCGCCTTGATGCCGTGCCTCAGGA
GAACAACGACACTCATTTCCACGACTCGGAGACCGGTGTCGAGCTGGAGG
TGAAGGACAAGCAATCCCTCGTGGAATGGATCGCTAACAACTACAAGAAC
TTCGGCGCGGCCTTGGAGTTCGTCACCAACAGGCATGTTTATCGCAACCT
ATAA
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Coding sequence (CDS) from alignment at H-elongata_contig82907:226..929-

>mRNA_H-elongata_contig82907.15928.1 ID=mRNA_H-elongata_contig82907.15928.1|Name=mRNA_H-elongata_contig82907.15928.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig82907:226..929- (Himanthalia elongata Himel1 dioecious)
AGACTGGAAGTACGGAACAACAGTACGGGGGAAGAAAAAGTGCTGCACCT
CACTCCGGAGCAGAGACTGGAAGTACGGAACAACAGTACGGGGGAAGAAA
AAGTGCTGCACCTCACTCCGGAGCAGGAGAACAACGACACTCATTTCCAC
GACTCGGAGACCGGTGTCGAGCTGGAGGTGAAGGACAAGCAATCCCTCGT
GGAATGGATCGCTAACAACTACAAGAACTTCGGCGCGGCCTTGGAGTTCG
TCACCAACAGGCATGTTTATCGCAACCTATAAGAGAACAACGACACTCAT
TTCCACGACTCGGAGACCGGTGTCGAGCTGGAGGTGAAGGACAAGCAATC
CCTCGTGGAATGGATCGCTAACAACTACAAGAACTTCGGCGCGGCCTTGG
AGTTCGTCACCAACAGGCATGTTTATCGCAACCTATAA
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