mRNA_H-elongata_contig82819.15921.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82819.15921.1
Unique NamemRNA_H-elongata_contig82819.15921.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig82819.15921.1 vs. uniprot
Match: A0A6H5L6K7_9PHAE (TFIIB-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6K7_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 7.840e-18
Identity = 40/46 (86.96%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    4 SSIQIIGSMKRDFLATGRQPAGVCCAALTLATRVNRIERSKEEIRK 141
            ++++IIGSMKRDFLA+GRQPAG+CCAALTLATRVNRIERSKEEIRK
Sbjct:  228 TALKIIGSMKRDFLASGRQPAGICCAALTLATRVNRIERSKEEIRK 273
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BLAST of mRNA_H-elongata_contig82819.15921.1 vs. uniprot
Match: A0A6A0A2M7_HAELA (CYCLIN domain-containing protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0A2M7_HAELA)

HSP 1 Score: 52.4 bits (124), Expect = 1.780e-7
Identity = 22/44 (50.00%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    4 SSIQIIGSMKRDFLATGRQPAGVCCAALTLATRVNRIERSKEEI 135
            ++++++ SMKRD++ TGR+PAG+C AAL +A  ++ IERSK +I
Sbjct:   34 TALKLVQSMKRDWMQTGRRPAGICGAALFIAAHIHGIERSKRDI 77
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BLAST of mRNA_H-elongata_contig82819.15921.1 vs. uniprot
Match: A0A8J6AZP4_9EUKA (Transcription factor TFIIB repeat n=1 Tax=Carpediemonas membranifera TaxID=201153 RepID=A0A8J6AZP4_9EUKA)

HSP 1 Score: 52.0 bits (123), Expect = 1.950e-6
Identity = 23/47 (48.94%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    4 SSIQIIGSMKRDFLATGRQPAGVCCAALTLATRVNRIERSKEEIRKV 144
            +++Q+I SMKRD++  GR+PAG+C AA+ +A R++  ER++EEI +V
Sbjct:  208 TALQLIASMKRDYMHIGRRPAGLCGAAIFVAARMHGFERTQEEIMQV 254
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BLAST of mRNA_H-elongata_contig82819.15921.1 vs. uniprot
Match: A0A5J4TJR1_9EUKA (Putative transcription factor IIIB 90 kDa subunit (Fragment) n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4TJR1_9EUKA)

HSP 1 Score: 51.6 bits (122), Expect = 2.610e-6
Identity = 21/44 (47.73%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    4 SSIQIIGSMKRDFLATGRQPAGVCCAALTLATRVNRIERSKEEI 135
            ++++++  MKRD++ TGR PAGVC AAL +A R++  ERS+++I
Sbjct:  148 TALKLVQQMKRDWIVTGRSPAGVCGAALLIAARIHNFERSQKQI 191
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BLAST of mRNA_H-elongata_contig82819.15921.1 vs. uniprot
Match: A0A5J4WUL8_9EUKA (B-related factor 1 n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4WUL8_9EUKA)

HSP 1 Score: 51.6 bits (122), Expect = 2.680e-6
Identity = 21/44 (47.73%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    4 SSIQIIGSMKRDFLATGRQPAGVCCAALTLATRVNRIERSKEEI 135
            ++++++  MKRD++ TGR PAGVC AAL +A R++  ERS+++I
Sbjct:  213 TALKLVQQMKRDWIVTGRSPAGVCGAALLIAARIHNFERSQKQI 256
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BLAST of mRNA_H-elongata_contig82819.15921.1 vs. uniprot
Match: K8EEG5_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EEG5_9CHLO)

HSP 1 Score: 50.8 bits (120), Expect = 5.010e-6
Identity = 20/45 (44.44%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 HSSIQIIGSMKRDFLATGRQPAGVCCAALTLATRVNRIERSKEEI 135
            +++++++ SMKRD++ TGR+PAG+C AAL +A+ V+  +RSK ++
Sbjct:  215 NTALRLVASMKRDWMQTGRRPAGICGAALWVASHVHGFDRSKSDV 259
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BLAST of mRNA_H-elongata_contig82819.15921.1 vs. uniprot
Match: A0A7S2B4G7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B4G7_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 6.830e-6
Identity = 21/47 (44.68%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    4 SSIQIIGSMKRDFLATGRQPAGVCCAALTLATRVNRIERSKEEIRKV 144
            ++++I+ +MKRD++ TGR+PAG+C AAL ++ R N   R++ E+ KV
Sbjct:  220 AALRIVANMKRDWMLTGRRPAGICAAALLISARANGFPRTQAEMVKV 266
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BLAST of mRNA_H-elongata_contig82819.15921.1 vs. uniprot
Match: A0A7S2RQN0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RQN0_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 6.840e-6
Identity = 21/47 (44.68%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    4 SSIQIIGSMKRDFLATGRQPAGVCCAALTLATRVNRIERSKEEIRKV 144
            S+++I+  MKRD++ TGR+PAG+C AAL +A R +   R++ E+ K+
Sbjct:  199 SALRIVARMKRDWIQTGRRPAGICAAALLIAARTHGFPRTQAEVVKI 245
[Close]
BLAST of mRNA_H-elongata_contig82819.15921.1 vs. uniprot
Match: A0A7S3EK93_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EK93_9RHOD)

HSP 1 Score: 50.1 bits (118), Expect = 9.290e-6
Identity = 20/45 (44.44%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 HSSIQIIGSMKRDFLATGRQPAGVCCAALTLATRVNRIERSKEEI 135
            +++++++  MKRD++ATGR+P+G+C AA+ +A R++   RSK+EI
Sbjct:  201 NTALRLVARMKRDWMATGRRPSGLCGAAIIIACRMHNFFRSKDEI 245
[Close]
BLAST of mRNA_H-elongata_contig82819.15921.1 vs. uniprot
Match: A0A7S3A348_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A348_9RHOD)

HSP 1 Score: 50.1 bits (118), Expect = 9.340e-6
Identity = 20/45 (44.44%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 HSSIQIIGSMKRDFLATGRQPAGVCCAALTLATRVNRIERSKEEI 135
            +++++++  MKRD++ATGR+P+G+C AA+ +A R++   RSK+EI
Sbjct:  201 NTALRLVARMKRDWMATGRRPSGLCGAAIIIACRMHNFFRSKDEI 245
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82819.15921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6K7_9PHAE7.840e-1886.96TFIIB-type domain-containing protein n=2 Tax=Ectoc... [more]
A0A6A0A2M7_HAELA1.780e-750.00CYCLIN domain-containing protein (Fragment) n=1 Ta... [more]
A0A8J6AZP4_9EUKA1.950e-648.94Transcription factor TFIIB repeat n=1 Tax=Carpedie... [more]
A0A5J4TJR1_9EUKA2.610e-647.73Putative transcription factor IIIB 90 kDa subunit ... [more]
A0A5J4WUL8_9EUKA2.680e-647.73B-related factor 1 n=1 Tax=Streblomastix strix Tax... [more]
K8EEG5_9CHLO5.010e-644.44Uncharacterized protein n=1 Tax=Bathycoccus prasin... [more]
A0A7S2B4G7_9STRA6.830e-644.68Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2RQN0_9STRA6.840e-644.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3EK93_9RHOD9.290e-644.44Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S3A348_9RHOD9.340e-644.44Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82819contigH-elongata_contig82819:387..530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue3.6e-12
Seed eggNOG ortholog2880.D8LS89
Preferred nameBRF1
KEGG koko:K15196
GOsGO:0000126,GO:0000976,GO:0000992,GO:0000994,GO:0000995,GO:0001006,GO:0001016,GO:0001025,GO:0001032,GO:0001067,GO:0001112,GO:0001120,GO:0001156,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006259,GO:0006351,GO:0006352,GO:0006355,GO:0006359,GO:0006383,GO:0006384,GO:0006399,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009304,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015074,GO:0016043,GO:0016070,GO:0016072,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031974,GO:0031981,GO:0032091,GO:0032196,GO:0032774,GO:0032991,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043393,GO:0043487,GO:0043488,GO:0043496,GO:0043565,GO:0043933,GO:0044085,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045945,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051098,GO:0051100,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0061013,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070063,GO:0070893,GO:0070897,GO:0070898,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090074,GO:0090304,GO:0090576,GO:0097159,GO:0097659,GO:0098781,GO:0140110,GO:0140223,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
EggNOG free text desc.DNA-templated transcriptional preinitiation complex assembly
EggNOG OGsCOG1405@1,KOG1598@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size117
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931234.51689-UTR-H-elongata_contig82819:386..4131622931234.51689-UTR-H-elongata_contig82819:386..413Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82819 387..413 +
1691679753.2751346-UTR-H-elongata_contig82819:386..4131691679753.2751346-UTR-H-elongata_contig82819:386..413Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82819 387..413 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931234.5309107-CDS-H-elongata_contig82819:413..5301622931234.5309107-CDS-H-elongata_contig82819:413..530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82819 414..530 +
1691679753.2871523-CDS-H-elongata_contig82819:413..5301691679753.2871523-CDS-H-elongata_contig82819:413..530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82819 414..530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82819.15921.1prot_H-elongata_contig82819.15921.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82819 414..530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82819.15921.1

>prot_H-elongata_contig82819.15921.1 ID=prot_H-elongata_contig82819.15921.1|Name=mRNA_H-elongata_contig82819.15921.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
MKRDFLATGRQPAGVCCAALTLATRVNRIERSKEEIRKV
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mRNA from alignment at H-elongata_contig82819:387..530+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82819.15921.1 ID=mRNA_H-elongata_contig82819.15921.1|Name=mRNA_H-elongata_contig82819.15921.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig82819:387..530+ (Himanthalia elongata Himel1 dioecious)
CATTCATCCATTCAGATAATTGGCTCCATGAAGAGAGACTTCCTGGCGAC
GGGCAGGCAGCCGGCGGGAGTGTGCTGCGCGGCCCTGACTCTCGCGACCC
GCGTTAACCGCATCGAGAGGTCCAAGGAAGAGATCCGGAAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig82819:387..530+

>mRNA_H-elongata_contig82819.15921.1 ID=mRNA_H-elongata_contig82819.15921.1|Name=mRNA_H-elongata_contig82819.15921.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig82819:387..530+ (Himanthalia elongata Himel1 dioecious)
ATGAAGAGAGACTTCCTGGCGACGGGCAGGCAGCCGGCGGGAGTGTGCTG
CGCGGCCCTGACTCTCGCGACCCGCGTTAACCGCATCGAGAGGTCCAAGG
AAGAGATCCGGAAGGTGATGAAGAGAGACTTCCTGGCGACGGGCAGGCAG
CCGGCGGGAGTGTGCTGCGCGGCCCTGACTCTCGCGACCCGCGTTAACCG
CATCGAGAGGTCCAAGGAAGAGATCCGGAAGGTG
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