mRNA_H-elongata_contig12071.1592.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12071.1592.1
Unique NamemRNA_H-elongata_contig12071.1592.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12071.1592.1 vs. uniprot
Match: D7FM12_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM12_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 1.910e-67
Identity = 170/384 (44.27%), Postives = 201/384 (52.34%), Query Frame = 1 
Query:    4 RVTSVSSAGVSALANSSPELECISLHGIAISDSAVITLCGACPRLRAVNLSMTRVTARSLRVLAKKESLRWVNLRCCTIGGNDAL--RTMKKLRRCMSSPKLPRDRGIVLGLERPGSQPGSRGSLRRLDSTGVSPGFGGGRSPREYRARRNYSFPGNEG-GRRAGDISAGDERDTAYLAVEREASTDVRVSHPSSGTNSSAVYSAVPSPFSSSSASAREQEVKRSSSSERVPFRLPVGMGDLSLGK---------------------------QPSSRTAGTPQRLGGS----EEEVVAFDWDAVPRGRGLGDLSMWKGFRGLSGDLVKHILCELHPFANVNFVGRRSGLMNP-SRKNNHGYLVHTSKHALSWVEIEVDKQGCV 1050
            R   VS +GVSALA  SPEL CISLHG A++D AV  LC ACPRLR +NLS+TRVT RSLR+LA K+SLRWVN+RCC+  GNDA+  + +   R  +S PK PRDRG VLG+ERP  Q     S  R  S       G   S R   +     + G  G GRR   I    +    +  V  EAS        ++     AV S    P   + AS+R+   +           LP G+GDLSLG+                           Q   R     +   G     EE VV FDWD VPRG G+G L  WKGFRGLSGDLVK+I+ ELHP A V F      L  P SRKN HGYLVHTSK   +WVE EVD QGCV
Sbjct:  343 RAHRVSVSGVSALAVGSPELACISLHGTALADGAVRALCDACPRLRHINLSLTRVTERSLRLLAMKDSLRWVNVRCCSGIGNDAVTAKILANFRSRLSPPKHPRDRGTVLGMERPEPQ-----SRTRAPSCSRRKPLGANSSGRSEDSSGCGGYQGERGKGRREAAIR---QEGNGHELVAEEASAIQ-----ATAAEEEAVPSLAGEP---AGASSRDHPPRP----XXXXXLLPAGVGDLSLGRHRRRGXXXXXXXREGTXXXXXXXXXXXQDGGRGFAKGRGXXGERRVEEEAVVPFDWDTVPRGSGVGVLGSWKGFRGLSGDLVKNIIRELHPHAQVEFRPESDFLFGPHSRKNTHGYLVHTSKFGQAWVEFEVDGQGCV 706
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BLAST of mRNA_H-elongata_contig12071.1592.1 vs. uniprot
Match: A0A6H5KWK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWK9_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 2.760e-31
Identity = 75/118 (63.56%), Postives = 88/118 (74.58%), Query Frame = 1 
Query:    4 RVTSVSSAGVSALANSSPELECISLHGIAISDSAVITLCGACPRLRAVNLSMTRVTARSLRVLAKKESLRWVNLRCCTIGGNDAL--RTMKKLRRCMSSPKLPRDRGIVLGLERPGSQ 351
            R   VS +GVSALA  SPEL CISLHGIA+ D AV  LC ACPRLR +NLS+TRVT RSLR+LA K+SLRWVN+RCC+  GNDA+  + +   R  +S PK PRDRG VLG+ERP  Q
Sbjct:   82 RAHRVSVSGVSALAVGSPELACISLHGIALVDEAVRALCDACPRLRHINLSLTRVTERSLRLLATKDSLRWVNVRCCSGIGNDAVTAKVLADFRSRLSPPKHPRDRGTVLGMERPEPQ 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12071.1592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM12_ECTSI1.910e-6744.27Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KWK9_9PHAE2.760e-3163.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12071contigH-elongata_contig12071:5486..8614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1066
Cds size900
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.8543463-UTR-H-elongata_contig12071:5485..54951622929708.8543463-UTR-H-elongata_contig12071:5485..5495Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12071 5486..5495 -
1691679127.4801185-UTR-H-elongata_contig12071:5485..54951691679127.4801185-UTR-H-elongata_contig12071:5485..5495Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12071 5486..5495 -
1622929708.947778-UTR-H-elongata_contig12071:8458..86141622929708.947778-UTR-H-elongata_contig12071:8458..8614Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12071 8459..8614 -
1691679127.539171-UTR-H-elongata_contig12071:8458..86141691679127.539171-UTR-H-elongata_contig12071:8458..8614Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12071 8459..8614 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.8695524-CDS-H-elongata_contig12071:5495..55641622929708.8695524-CDS-H-elongata_contig12071:5495..5564Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12071 5496..5564 -
1691679127.4888222-CDS-H-elongata_contig12071:5495..55641691679127.4888222-CDS-H-elongata_contig12071:5495..5564Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12071 5496..5564 -
1622929708.883835-CDS-H-elongata_contig12071:6214..63021622929708.883835-CDS-H-elongata_contig12071:6214..6302Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12071 6215..6302 -
1691679127.4985628-CDS-H-elongata_contig12071:6214..63021691679127.4985628-CDS-H-elongata_contig12071:6214..6302Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12071 6215..6302 -
1622929708.899895-CDS-H-elongata_contig12071:6945..70611622929708.899895-CDS-H-elongata_contig12071:6945..7061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12071 6946..7061 -
1691679127.5072627-CDS-H-elongata_contig12071:6945..70611691679127.5072627-CDS-H-elongata_contig12071:6945..7061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12071 6946..7061 -
1622929708.9183693-CDS-H-elongata_contig12071:7463..80341622929708.9183693-CDS-H-elongata_contig12071:7463..8034Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12071 7464..8034 -
1691679127.5147254-CDS-H-elongata_contig12071:7463..80341691679127.5147254-CDS-H-elongata_contig12071:7463..8034Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12071 7464..8034 -
1622929708.9374158-CDS-H-elongata_contig12071:8402..84581622929708.9374158-CDS-H-elongata_contig12071:8402..8458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12071 8403..8458 -
1691679127.522835-CDS-H-elongata_contig12071:8402..84581691679127.522835-CDS-H-elongata_contig12071:8402..8458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12071 8403..8458 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12071.1592.1prot_H-elongata_contig12071.1592.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12071 5496..8458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12071.1592.1

>prot_H-elongata_contig12071.1592.1 ID=prot_H-elongata_contig12071.1592.1|Name=mRNA_H-elongata_contig12071.1592.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=300bp
MTRVTARSLRVLAKKESLRWVNLRCCTIGGNDALRTMKKLRRCMSSPKLP
RDRGIVLGLERPGSQPGSRGSLRRLDSTGVSPGFGGGRSPREYRARRNYS
FPGNEGGRRAGDISAGDERDTAYLAVEREASTDVRVSHPSSGTNSSAVYS
AVPSPFSSSSASAREQEVKRSSSSERVPFRLPVGMGDLSLGKQPSSRTAG
TPQRLGGSEEEVVAFDWDAVPRGRGLGDLSMWKGFRGLSGDLVKHILCEL
HPFANVNFVGRRSGLMNPSRKNNHGYLVHTSKHALSWVEIEVDKQGCVV*
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mRNA from alignment at H-elongata_contig12071:5486..8614-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12071.1592.1 ID=mRNA_H-elongata_contig12071.1592.1|Name=mRNA_H-elongata_contig12071.1592.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3129bp|location=Sequence derived from alignment at H-elongata_contig12071:5486..8614- (Himanthalia elongata Himel1 dioecious)
GCAAGGGTGACGAGCGTCTCGAGCGCGGGCGTGTCGGCGCTGGCGAACAG
CAGTCCGGAGCTGGAGTGCATCTCGCTACACGGTATCGCAATCAGTGACA
GTGCCGTTATCACGCTTTGCGGCGCATGCCCCAGGTTGAGGGCGGTTAAT
CTATCCATGACGAGGGTGACCGCTCGATCGCTGCGCGTGCTCGCGAAAAA
GGAGAGCTTGAGGTGTGTGGGCCTGATCGAGCCTCTACGTAGACAGGGGG
TGGGGTGATGTAGAGGATAGATATTCTCAGCTAAGTGGGCGACCGAATGG
TTAAATTTGTTAAAGATCTTATCAATCCGGCGGTATTTCGAGACTCTACG
TAGTGTTCTTACTATTTCGTAATGACCGTTTCATTTTGTTTTGCTTGCTT
CTGTAGCATCACGCTCAGTTAACATCTTTGCTACATGCATCGGGGATCTG
GCGCCACTTTCCTTACTGTAATACACTACTTTCAAGTTGTACGAGCTCTG
GGAGTGTAGGCAACGGGTCGATCCGTCTGCTTACCAGAGCAATGCTATTT
GCGCACCCCGCCACCCCGCCCGCTGTTCAGGTGGGTGAATTTACGCTGCT
GCACCATCGGCGGCAACGACGCATTGCGCACAATGAAAAAACTACGGAGA
TGCATGTCGTCGCCGAAGCTTCCTCGAGACCGGGGGATCGTCTTGGGATT
GGAACGCCCTGGAAGCCAACCCGGGTCAAGGGGATCGCTTCGTCGACTTG
ATTCGACGGGGGTGTCCCCTGGTTTCGGCGGTGGACGTTCACCTCGCGAG
TACCGTGCACGACGGAACTACTCGTTCCCCGGTAACGAGGGCGGTAGAAG
GGCGGGGGATATAAGTGCCGGTGATGAACGTGACACAGCGTACTTAGCGG
TAGAGCGTGAGGCATCGACCGATGTTCGCGTCAGTCATCCATCAAGTGGG
ACAAACTCCTCAGCGGTGTATTCAGCCGTACCCTCCCCCTTCTCCTCCTC
TTCCGCCTCGGCTAGAGAGCAAGAGGTGAAAAGATCATCGTCGAGCGAGC
GGGTTCCTTTCCGCCTGCCAGTTGGGATGGGCGATTTGTCGCTGGGAAAG
CAACCCAGCTCCCGGACCGCAGGGACGCCGCAACGGCTTGGTGGCTCAGA
GGTGAGGCGTCGGGCGCTGGTGGAAGATGGGGGGGGGAAGGGGGGTATTC
CGCAATAGACTCCGGCAGACCTCTCGAGTCGTCGGAGGTGATGTGTTTTC
GCTTTGCTAGTGGATGGGAGGGAAGGTTCCATTGTTCAGGTAACTGCCGT
GTACCATTGCCTTGCGGGGGACGACTTGTTCTGGTGATATTGGCGCCGCT
CTTGTCGCAAGTGGCGCGGGCATACTGGTCCGCACTCTTTGAGCGGGAAC
TCGGGGTACAGATTATCCCACGCGTGTATTTTTTTAAGATTGGTCGTCCT
GGCATCTGAAAAACGTGTAAAGCAAGGGGAAACTGCTTTGTTGATGAATA
TCCGCTAATGGCGGCGTGTGCACATGCCCTATGCAACCCCATGCACGAAA
CAGGAAGAGGTCGTGGCATTTGATTGGGACGCGGTGCCTCGAGGTAGAGG
CTTGGGGGATCTGAGCATGTGGAAGGGTTTTCGCGGACTGTCGGGCGACT
TGGTTAAGCACATCTTGTGGTGAGTCTTGGTCTTGGTCTTGGTCTGTATG
TGCCGATATGGTGTGCCAACTCCATGAAAGAGAGAGAGAAAAACGATGAT
GCTCGTACTACTTGATTTATATACCACGCGTGGATCGCCACGTCTTAACC
CTTTTGGGACTGAATTTCAACTTTTATATTGAATTTTGCGCGTAAAAAAC
AGATCGAGTTCCATAGGGGCTAAGGTAAGGACGTGACTCATGACGTGTCC
GCTAAACAAAAGAAAGCTGTATTGATTTATTTTTTAAGAGGGAGATAAAA
AGTAAAATAAAATAAACTTGACTATGCGTAGCCCGTGCGTGACTCATATC
TTTATCCTCCGCAGTGGGTTTGGTTCGTGAGGAGAGGCAAATTGCGAAGC
AGAGGCGCCTCGCCACGAACCGCCCAGGCTGCTTGCGCCTCTCCCGTGTA
TAAATCACCTTCGAGGGCGTTTTGCTACTCCACTTGTTCCACCGGGCACT
CTGTCTCCTCCTTTCCAGTACGGAGCTGGTTGCCGATCCCTCTTTTTTTC
TTCTTCTTTTTTCTAGCATTTCGTTTGCCTTTTATTGCTTCTGCATTGTT
CTCGTGTGCTACTCTGCCCTGTCATGCCCTTCCCCAATGTGCATCGTGTT
TCCTTGCCCTAGCGAGTTGCATCCGTTTGCCAACGTCAACTTCGTGGGAC
GCCGGTCGGGCTTGATGAACCCTTCGCGCAAGAACAACCACGGTTACTTG
GTGAGACCTCGTCGCGCTTGGAAGATGGGAGATGAGTTGCAAAATGATCG
GCTTTTTATGTAATGTATCCCCTCTCTCCCTATGTATCGCGGTTCGCCTC
TGGTCGTGCGGTATCAAATGTGGGTGACATGAAAGGTTATGGAATGGAAA
CGATCGGGGGCGGAACCGAATATGTTGTAGAGCATTCGCTGTCTGGAGCT
ATAGATGGGTCAAAGGCCAGTCGTCCCAGTCCCAAAAGGGCGCCGTTTTA
GAGCTCTCGGCGCCATAAGCTAGCTAGCTATACACGCTTCAGACGGTTTT
GCACTCAAAACACTAAACTGTAATGAGTGACGCTGTACTTGACGCTCAGT
GTGATGATTGTCGCTGTTTTAGTCACTCCCCCCCTCCCCCTCCCCCTATT
CAATGCTATTCGATGCCAGCTCTGCACGGAGAAGGGAGTCGGGGCAAAAA
ACAAAAGAAACTAGACTAGATGGCTTGTGATTTTGATAATAATTGTCCTA
ATTATCATAACCAGGGGTTTTTAATGATACTAGTCTTTAATCCACCAGCG
CATATGGCGGTAACGGAAAAGAATGGGAATCTCGGGAGGTCGAGCGGGCA
ATCGATCCGCCCTCCGTGTTTTCGCGCGCCTTGCCCCCCTCTCGTTCTAG
GTGCACACCAGCAAACACGCCTTGTCGTGGGTGGAGATTGAGGTTGACAA
GCAGGGCTGCGTGGTGTGACTCAATGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig12071:5486..8614-

>mRNA_H-elongata_contig12071.1592.1 ID=mRNA_H-elongata_contig12071.1592.1|Name=mRNA_H-elongata_contig12071.1592.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1800bp|location=Sequence derived from alignment at H-elongata_contig12071:5486..8614- (Himanthalia elongata Himel1 dioecious)
ATGACGAGGGTGACCGCTCGATCGCTGCGCGTGCTCGCGAAAAAGGAGAG
CTTGAGATGACGAGGGTGACCGCTCGATCGCTGCGCGTGCTCGCGAAAAA
GGAGAGCTTGAGGTGGGTGAATTTACGCTGCTGCACCATCGGCGGCAACG
ACGCATTGCGCACAATGAAAAAACTACGGAGATGCATGTCGTCGCCGAAG
CTTCCTCGAGACCGGGGGATCGTCTTGGGATTGGAACGCCCTGGAAGCCA
ACCCGGGTCAAGGGGATCGCTTCGTCGACTTGATTCGACGGGGGTGTCCC
CTGGTTTCGGCGGTGGACGTTCACCTCGCGAGTACCGTGCACGACGGAAC
TACTCGTTCCCCGGTAACGAGGGCGGTAGAAGGGCGGGGGATATAAGTGC
CGGTGATGAACGTGACACAGCGTACTTAGCGGTAGAGCGTGAGGCATCGA
CCGATGTTCGCGTCAGTCATCCATCAAGTGGGACAAACTCCTCAGCGGTG
TATTCAGCCGTACCCTCCCCCTTCTCCTCCTCTTCCGCCTCGGCTAGAGA
GCAAGAGGTGAAAAGATCATCGTCGAGCGAGCGGGTTCCTTTCCGCCTGC
CAGTTGGGATGGGCGATTTGTCGCTGGGAAAGCAACCCAGCTCCCGGACC
GCAGGGACGCCGCAACGGCTTGGTGGCTCAGAGGTGGGTGAATTTACGCT
GCTGCACCATCGGCGGCAACGACGCATTGCGCACAATGAAAAAACTACGG
AGATGCATGTCGTCGCCGAAGCTTCCTCGAGACCGGGGGATCGTCTTGGG
ATTGGAACGCCCTGGAAGCCAACCCGGGTCAAGGGGATCGCTTCGTCGAC
TTGATTCGACGGGGGTGTCCCCTGGTTTCGGCGGTGGACGTTCACCTCGC
GAGTACCGTGCACGACGGAACTACTCGTTCCCCGGTAACGAGGGCGGTAG
AAGGGCGGGGGATATAAGTGCCGGTGATGAACGTGACACAGCGTACTTAG
CGGTAGAGCGTGAGGCATCGACCGATGTTCGCGTCAGTCATCCATCAAGT
GGGACAAACTCCTCAGCGGTGTATTCAGCCGTACCCTCCCCCTTCTCCTC
CTCTTCCGCCTCGGCTAGAGAGCAAGAGGTGAAAAGATCATCGTCGAGCG
AGCGGGTTCCTTTCCGCCTGCCAGTTGGGATGGGCGATTTGTCGCTGGGA
AAGCAACCCAGCTCCCGGACCGCAGGGACGCCGCAACGGCTTGGTGGCTC
AGAGGAAGAGGTCGTGGCATTTGATTGGGACGCGGTGCCTCGAGGTAGAG
GCTTGGGGGATCTGAGCATGTGGAAGGGTTTTCGCGGACTGTCGGGCGAC
TTGGTTAAGCACATCTTGTGGAAGAGGTCGTGGCATTTGATTGGGACGCG
GTGCCTCGAGGTAGAGGCTTGGGGGATCTGAGCATGTGGAAGGGTTTTCG
CGGACTGTCGGGCGACTTGGTTAAGCACATCTTGTGCGAGTTGCATCCGT
TTGCCAACGTCAACTTCGTGGGACGCCGGTCGGGCTTGATGAACCCTTCG
CGCAAGAACAACCACGGTTACTTGCGAGTTGCATCCGTTTGCCAACGTCA
ACTTCGTGGGACGCCGGTCGGGCTTGATGAACCCTTCGCGCAAGAACAAC
CACGGTTACTTGGTGCACACCAGCAAACACGCCTTGTCGTGGGTGGAGAT
TGAGGTTGACAAGCAGGGCTGCGTGGTGTGAGTGCACACCAGCAAACACG
CCTTGTCGTGGGTGGAGATTGAGGTTGACAAGCAGGGCTGCGTGGTGTGA
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