prot_H-elongata_contig12071.1592.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12071.1592.1
Unique Nameprot_H-elongata_contig12071.1592.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length300
Homology
BLAST of mRNA_H-elongata_contig12071.1592.1 vs. uniprot
Match: D7FM12_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM12_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 6.720e-47
Identity = 136/333 (40.84%), Postives = 163/333 (48.95%), Query Frame = 0
Query:    1 MTRVTARSLRVLAKKESLRWVNLRCCTIGGNDAL--RTMKKLRRCMSSPKLPRDRGIVLGLERPGSQPGSRGSLRRLDSTGVSPGFGGGRSPREYRARRNYSFPGNEG-GRRAGDISAGDERDTAYLAVEREASTDVRVSHPSSGTNSSAVYSAVPSPFSSSSASAREQEVKRSSSSERVPFRLPVGMGDLSLGK---------------------------QPSSRTAGTPQRLGGS----EEEVVAFDWDAVPRGRGLGDLSMWKGFRGLSGDLVKHILCELHPFANVNFVGRRSGLMNP-SRKNNHGYLVHTSKHALSWVEIEVDKQGCV 298
            +TRVT RSLR+LA K+SLRWVN+RCC+  GNDA+  + +   R  +S PK PRDRG VLG+ERP  Q     S  R  S       G   S R   +     + G  G GRR   I    +    +  V  EAS        ++     AV S    P   + AS+R+   +           LP G+GDLSLG+                           Q   R     +   G     EE VV FDWD VPRG G+G L  WKGFRGLSGDLVK+I+ ELHP A V F      L  P SRKN HGYLVHTSK   +WVE EVD QGCV
Sbjct:  394 LTRVTERSLRLLAMKDSLRWVNVRCCSGIGNDAVTAKILANFRSRLSPPKHPRDRGTVLGMERPEPQ-----SRTRAPSCSRRKPLGANSSGRSEDSSGCGGYQGERGKGRREAAIR---QEGNGHELVAEEASAIQ-----ATAAEEEAVPSLAGEP---AGASSRDHPPRP----XXXXXLLPAGVGDLSLGRHRRRGXXXXXXXREGTXXXXXXXXXXXQDGGRGFAKGRGXXGERRVEEEAVVPFDWDTVPRGSGVGVLGSWKGFRGLSGDLVKNIIRELHPHAQVEFRPESDFLFGPHSRKNTHGYLVHTSKFGQAWVEFEVDGQGCV 706          
BLAST of mRNA_H-elongata_contig12071.1592.1 vs. uniprot
Match: A0A6H5KWK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWK9_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.050e-18
Identity = 64/145 (44.14%), Postives = 75/145 (51.72%), Query Frame = 0
Query:  172 SSSERVPFRLPVGMGDLSLGKQ---------PSSR-------TAGTPQRLGG---------------SEEEVVAFDWDAVPRGRGLGDLSMWKGFRGLSGDLVKHILCELHPFANVNFVGRRSGLMNP-SRKNNHGYLVHTSKHA 284
            SS +  P  LP G+GDLSLG+          PSS        + GT  + GG                 E VV FDWD VPRG G+G L  WKGFRGLSGDLVK+++ ELHP A V F      +  P SR N HGYLV  S+ A
Sbjct:  442 SSRDHPPPLLPTGVGDLSLGRHRRHGESRGSPSSEGTKRGEGSTGTGFQDGGRGVAKGRGGGGDRRVEGEVVVPFDWDTVPRGSGVGVLGSWKGFRGLSGDLVKNVIRELHPHAQVEFRPGYDVVFGPHSRTNTHGYLVAKSRAA 586          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12071.1592.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM12_ECTSI6.720e-4740.84Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KWK9_9PHAE1.050e-1844.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12071contigH-elongata_contig12071:5496..8458 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12071.1592.1mRNA_H-elongata_contig12071.1592.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12071 5486..8614 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12071.1592.1 ID=prot_H-elongata_contig12071.1592.1|Name=mRNA_H-elongata_contig12071.1592.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=300bp
MTRVTARSLRVLAKKESLRWVNLRCCTIGGNDALRTMKKLRRCMSSPKLP
RDRGIVLGLERPGSQPGSRGSLRRLDSTGVSPGFGGGRSPREYRARRNYS
FPGNEGGRRAGDISAGDERDTAYLAVEREASTDVRVSHPSSGTNSSAVYS
AVPSPFSSSSASAREQEVKRSSSSERVPFRLPVGMGDLSLGKQPSSRTAG
TPQRLGGSEEEVVAFDWDAVPRGRGLGDLSMWKGFRGLSGDLVKHILCEL
HPFANVNFVGRRSGLMNPSRKNNHGYLVHTSKHALSWVEIEVDKQGCVV*
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