mRNA_H-elongata_contig8266.15911.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8266.15911.1
Unique NamemRNA_H-elongata_contig8266.15911.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8266.15911.1 vs. uniprot
Match: D8LPV1_ECTSI (Dus domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPV1_ECTSI)

HSP 1 Score: 523 bits (1346), Expect = 2.830e-181
Identity = 247/306 (80.72%), Postives = 279/306 (91.18%), Query Frame = 2
Query:    2 RSIGSPKRVVAPMVDQSELAFRRLCRRYGSDLCYTPMYNSKCFAVSSHYRNTNFDPHPEDRPLFVQFCGHDPALLLASAKFVENDCDAVDLNLGCPQGIARKGRYGAFLLEEWALLRDIVSTLSRNLSIPVTCKVRLLDSVDDTISMCKILVSAGARIITVHGRTKEQKGRAVQKCDWEAIRRIKEALPVPVFANGGVASLSDYDRCLRETRCDGVMSSEAVLERPGFFSDNVSSITGRTSTQDDLVLEYLELVKESPPHSRGRVSISCLRAHLFKCLFSGLATRTDLRARLTKARSAQEMASMAL 919
            RSIGSP R+VAPMVDQSELAFRRLCRRYGS+LCYTPMYNSKCFAVSS YR +NFDPHPEDRPL VQFCGHDPALLLASAKFVE +CDA+DLNLGCPQGIARKGRYGAFLLEEWALLRDIVSTL++NLSIPVTCKVRLLDSV+DTI+MCK+LV+AGARIITVHGRTKEQK +A   C+W+AIRRIKEALPVPVF+NG ++SL D +RCLRET CDGVMSSE VLERPG FSDNVS++TG   +QDD+VLEY++L K+SPPHSRGR S+ CLR H+FKCLF+ +A RTDLRARLTKAR+ +EM  +AL
Sbjct:   81 RSIGSPTRIVAPMVDQSELAFRRLCRRYGSNLCYTPMYNSKCFAVSSAYRKSNFDPHPEDRPLIVQFCGHDPALLLASAKFVEKECDAIDLNLGCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVFSNGAISSLEDVERCLRETGCDGVMSSEGVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEEMEELAL 386          
BLAST of mRNA_H-elongata_contig8266.15911.1 vs. uniprot
Match: A0A835Z5Z1_9STRA (Putative tRNA-dihydrouridine synthase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z1_9STRA)

HSP 1 Score: 331 bits (849), Expect = 4.330e-108
Identity = 165/302 (54.64%), Postives = 211/302 (69.87%), Query Frame = 2
Query:    2 RSIGSPKRVVAPMVDQSELAFRRLCRRYGSDLCYTPMYNSKCFAVSSHYRNTNFDPH-PEDRPLFVQFCGHDPALLLASAKFVENDCDAVDLNLGCPQGIARKGRYGAFLLEEWALLRDIVSTLSRNLSIPVTCKVRLL-DSVDDTISMCKILVSAGARIITVHGRTKEQKGRAVQKCDWEAIRRIKEALPVPVFANGGVASLSDYDRCLRETRCDGVMSSEAVLERPGFFSDNVSSITGRTSTQDDLVLEYLELVKESPPHSRGRVSISCLRAHLFKCLFSGLATRTDLRARLTKARSAQE 901
            R +GSP+++VAPMVDQSELAFR L R+YG++LCYTPM NSK       YR+TN D   PEDRPL VQFCG+DP ++ A+A+ V+  CDAVD+NLGCPQ IAR+GRYGAFLLEEW LL+D+V  +  +  +PVTCKVRLL +SV+DTI +CK+LV AGA ++TVHGRT+ Q G     C+W+AIRRI+EA+PVPVFANGG+  + D++ CLR T   GVM SE VL  P FF+ N     G   T + +  EYL L +  PP    R     LR H+FK LF+ L+   DLR  L  + S ++
Sbjct:   16 RKMGSPRKIVAPMVDQSELAFRMLARKYGAELCYTPMINSKILLEDHTYRSTNLDLECPEDRPLIVQFCGNDPGVMAAAAQLVDRRCDAVDINLGCPQNIARRGRYGAFLLEEWDLLQDMVWAMHCSAKVPVTCKVRLLQESVEDTIELCKLLVGAGAAMLTVHGRTRMQVGCLAGVCNWDAIRRIREAVPVPVFANGGIGCIEDFEECLRVTGAAGVMVSEVVLSNPAFFAPNAPGPCGVAPTSESMCREYLALARRFPPK---RYVSGILRGHVFKLLFTALSRCEDLRPVLAVSHSLED 314          
BLAST of mRNA_H-elongata_contig8266.15911.1 vs. uniprot
Match: A0A6G0WW03_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WW03_9STRA)

HSP 1 Score: 330 bits (846), Expect = 7.060e-107
Identity = 160/296 (54.05%), Postives = 211/296 (71.28%), Query Frame = 2
Query:   17 PKRVVAPMVDQSELAFRRLCRRYGSDLCYTPMYNSKCFAVSSHYRNTNFDPHPEDRPLFVQFCGHDPALLLASAKFVENDCDAVDLNLGCPQGIARKGRYGAFLLEEWALLRDIVSTLSRNLSIPVTCKVRLLDSVDDTISMCKILVSAGARIITVHGRTKEQKGRAVQKCDWEAIRRIKEALPVPVFANGGVASLSDYDRCLRETRCDGVMSSEAVLERPGFFSDNVSSITGRTSTQDDLVLEYLELVKESPPHSRGRVSISCLRAHLFKCLFSGLATRTDLRARLTKARSAQEM 904
            PKR+VAPMVDQSELAFR L R+YG+DLCYTPM++++ F   + YR T +   P DRPLFVQFCG++P ++L +A++VEN+CDAVDLNLGCPQGIA+KGRYGAFL+ E  ++R IV  LS NLS+PV+CK+RLL   +DT++ C +L+ AG   + VHGRTKE     V++CDW  I R+K+ LP+PVFANGG+ +  D  RC+ ET  +GVMSSEA+LERP  F+ +     G+   Q DL +EY+EL K+ PP  +       LRAHLFK LF  L   TDLR +   A++  E+
Sbjct:   29 PKRIVAPMVDQSELAFRMLARKYGADLCYTPMFHARMFQEDATYRATAWQVEPSDRPLFVQFCGNNPDVVLNAARYVENECDAVDLNLGCPQGIAKKGRYGAFLMHEPEVVRSIVEKLSANLSVPVSCKIRLLPKYEDTLAFCNMLIDAGCCWLVVHGRTKEMNKHLVRECDWATIARLKKELPIPVFANGGIETDDDVVRCMEETNVEGVMSSEAILERPALFAGDKDK-DGQRIRQIDLAMEYMELAKQFPPPEKF------LRAHLFKILFQDLKVHTDLREQTGLAQTHDEL 317          
BLAST of mRNA_H-elongata_contig8266.15911.1 vs. uniprot
Match: A0A1V9Z9A1_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z9A1_9STRA)

HSP 1 Score: 328 bits (842), Expect = 2.250e-106
Identity = 160/304 (52.63%), Postives = 214/304 (70.39%), Query Frame = 2
Query:    8 IGSPKRVVAPMVDQSELAFRRLCRRYGSDLCYTPMYNSKCFAVSSHYRNTNFDPHPEDRPLFVQFCGHDPALLLASAKFVENDCDAVDLNLGCPQGIARKGRYGAFLLEEWALLRDIVSTLSRNLSIPVTCKVRLLDSVDDTISMCKILVSAGARIITVHGRTKEQKGRAVQKCDWEAIRRIKEALPVPVFANGGVASLSDYDRCLRETRCDGVMSSEAVLERPGFFSDNVSSITGRTSTQDDLVLEYLELVKESPPHSRGRVSISCLRAHLFKCLFSGLATRTDLRARLTKARSAQEMASMAL 919
            +G PK ++APMVDQSELA+R L R+YG DLCYTPM +++ F   S YR + +    EDRPLFVQFCG+DP  +LASAK V+++CDAVDLNLGCPQGIARKGRYGAFL+ E  ++R+IVSTLS NL +PV+CK+RLL   +DT++ C +LV AG   + +HGRTKE   + V++CDWE+IRR+++ LP+PVFANGG+ ++ D   CL  T  +GVMSSE +LE P  F+ N   +T +   Q D+ LEYL+   + PP  +       +RAHLFK LF  L   TDLR  +  A+S +E+  + L
Sbjct:   18 LGKPKTILAPMVDQSELAYRMLVRKYGVDLCYTPMIHARMFRDDSSYRASAWQVVKEDRPLFVQFCGNDPQTVLASAKLVQDNCDAVDLNLGCPQGIARKGRYGAFLMHEPDVVREIVSTLSTNLKVPVSCKIRLLPKYEDTLAFCNMLVDAGCCWLVIHGRTKEMNKQLVRECDWESIRRLRKELPIPVFANGGIENVDDVKACLEATEAEGVMSSEGILEWPALFTGNKDPVTQKPLRQVDVALEYLDWAAKYPPPEKF------IRAHLFKLLFQELKAFTDLREAIGVAQSHKELLDITL 315          
BLAST of mRNA_H-elongata_contig8266.15911.1 vs. uniprot
Match: A0A1V9ZQY0_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZQY0_9STRA)

HSP 1 Score: 327 bits (837), Expect = 3.360e-105
Identity = 156/301 (51.83%), Postives = 215/301 (71.43%), Query Frame = 2
Query:    2 RSIGSPKRVVAPMVDQSELAFRRLCRRYGSDLCYTPMYNSKCFAVSSHYRNTNFDPHPEDRPLFVQFCGHDPALLLASAKFVENDCDAVDLNLGCPQGIARKGRYGAFLLEEWALLRDIVSTLSRNLSIPVTCKVRLLDSVDDTISMCKILVSAGARIITVHGRTKEQKGRAVQKCDWEAIRRIKEALPVPVFANGGVASLSDYDRCLRETRCDGVMSSEAVLERPGFFSDNVSSITGRTSTQDDLVLEYLELVKESPPHSRGRVSISCLRAHLFKCLFSGLATRTDLRARLTKARSAQEM 904
            RS+G PK ++APMVDQSELA+R L R+YG DLCYTPM +++ F   + YR T +   PEDRPLFVQFCG+DP +LL SA++V+++CDAVDLNLGCPQGIARKGRYGAFL+ E  ++R+IV TLSR L++PV+CK+RL  + +DT++ C +LV AG   + +HGRTKE   + V++CDW+ I+R+++ LP+PVFANGG+ + +D   CL  T  +GVMSSE +LE P  F+ N +  TG   +Q DL LEY++   + PP  +       +RAHLFK LF  L   TDLR  + + ++  E+
Sbjct:   46 RSLGEPKTILAPMVDQSELAYRMLVRKYGVDLCYTPMIHARMFRDDATYRATAWQVVPEDRPLFVQFCGNDPDILLTSARYVQDNCDAVDLNLGCPQGIARKGRYGAFLMHEPEVVREIVETLSRELTVPVSCKIRLFPNYEDTLAFCNMLVDAGCCWLVIHGRTKEMNKQLVRECDWDTIKRLRKELPIPVFANGGIENDADVVACLAATEAEGVMSSEGILECPALFTGNKNPFTGIPVSQIDLALEYMDWAAKFPPPEKF------IRAHLFKMLFQELKVFTDLREAIGQGQTHAEL 340          
BLAST of mRNA_H-elongata_contig8266.15911.1 vs. uniprot
Match: W7TDH4_9STRA (Dihydrouridine synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDH4_9STRA)

HSP 1 Score: 326 bits (835), Expect = 1.580e-104
Identity = 171/307 (55.70%), Postives = 217/307 (70.68%), Query Frame = 2
Query:    2 RSIGSPKRVVAPMVDQSELAFRRLCRRYGSDLCYTPMYNSKCFAVSSHY-RNTNF--DPHPEDRPLFVQFCGHDPALLLASAKFV---ENDCDAVDLNLGCPQGIARKGRYGAFLLEEWALLRDIVSTLSRNLSIPVTCKVRLLDSVDDTISMCKILVSAGARIITVHGRTKEQKGRAVQKCDWEAIRRIKEALPVPVFANGGVASLSDYDRCLRETRCDGVMSSEAVLERPGFFSDNVSSITGRTSTQDDLVLEYLELVKESPPHSRGRVSISCLRAHLFKCLFSGLATRTDLRARLTKARSAQEM 904
            RS+GSP+ V APMVDQSELAFR LCRRYG+ L ++PM ++ C+       RN  F  + +P+D PL VQ CG+DP +LLA+AK +   E  C AVDLNLGCPQGIARKG+YGAFLL +  L+  IVSTLSR L  PVTCK+RLL +  +T+++C+ LV AG  ++TVHGRTKEQ    V  CDWEAIR+IK A+PVPVFANGG+A L D ++CL  T+ DGVMSSEA+LE PG FS NV+ +TG  + Q DL  EYLEL  + PP       + C+RAH+FK +F+G+    DLR  L  A + +EM
Sbjct:   50 RSMGSPRYVCAPMVDQSELAFRLLCRRYGTQLAFSPMVHAACYLREKRSKRNEVFFCNTNPQDWPLIVQLCGNDPGVLLAAAKEICRIEGVC-AVDLNLGCPQGIARKGKYGAFLLHQADLVVRIVSTLSRELDKPVTCKIRLLPTFSETLALCQALVGAGCSLLTVHGRTKEQNKHLVGSCDWEAIRKIKAAVPVPVFANGGIADLDDVEKCLSFTKVDGVMSSEALLENPGLFSRNVNVVTGHRANQLDLAEEYLELAAQHPPDR-----LKCVRAHVFKLVFTGVQLFEDLRDALVAAENVKEM 350          
BLAST of mRNA_H-elongata_contig8266.15911.1 vs. uniprot
Match: A0A024TEX3_9STRA (Dus domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TEX3_9STRA)

HSP 1 Score: 324 bits (831), Expect = 3.250e-104
Identity = 158/295 (53.56%), Postives = 211/295 (71.53%), Query Frame = 2
Query:    8 IGSPKRVVAPMVDQSELAFRRLCRRYGSDLCYTPMYNSKCFAVSSHYRNTNFDPHPEDRPLFVQFCGHDPALLLASAKFVENDCDAVDLNLGCPQGIARKGRYGAFLLEEWALLRDIVSTLSRNLSIPVTCKVRLLDSVDDTISMCKILVSAGARIITVHGRTKEQKGRAVQKCDWEAIRRIKEALPVPVFANGGVASLSDYDRCLRETRCDGVMSSEAVLERPGFFSDNVSSITGRTSTQDDLVLEYLELVKESPPHSRGRVSISCLRAHLFKCLFSGLATRTDLRARLTKARS 892
            +  PKR+VAPMVDQSELAFR L R+YG+DLCYTPM++++ F   + YR T +   P DRPLFVQFCG++P  +L +A++VE+ CDA+DLNLGCPQGIA+KGRYGAFL+ E  ++R IVS LS NLS+PVTCK+RLL   +DT++ C +L+ AG   + VHGRTKE     V++CDW++I R+K+ALP+PVFANGG+ +  D  RC+ ET  +GVMSSE +LERP  F+++     G    Q D+ +EYL+L K  PP  +       LRAHLFK LF  L   TDLR ++  A++
Sbjct:   54 LNQPKRIVAPMVDQSELAFRMLTRKYGADLCYTPMFHARMFQEDATYRETAWQVEPTDRPLFVQFCGNNPDTVLHAARYVESHCDAIDLNLGCPQGIAKKGRYGAFLMHEPDVVRSIVSKLSSNLSVPVTCKIRLLPKYEDTLAFCNMLIDAGCCWLVVHGRTKEMNKHLVRECDWDSIARLKKALPIPVFANGGIETDDDVVRCMLETGVNGVMSSEGILERPALFANDRDK-HGVPIRQIDVAIEYLQLAKTFPPPEKF------LRAHLFKILFQELKVHTDLREQIGLAQT 341          
BLAST of mRNA_H-elongata_contig8266.15911.1 vs. uniprot
Match: A0A2D4BU30_PYTIN (Dus domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BU30_PYTIN)

HSP 1 Score: 324 bits (830), Expect = 3.450e-104
Identity = 163/302 (53.97%), Postives = 206/302 (68.21%), Query Frame = 2
Query:    2 RSIGSPKRVVAPMVDQSELAFRRLCRRYGSDLCYTPMYNSKCFAVSSHYRNTNFDPHPEDRPLFVQFCGHDPALLLASAKFVENDCDAVDLNLGCPQGIARKGRYGAFLLEEWALLRDIVSTLSRNLSIPVTCKVRLLDSVDDTISMCKILVSAGARIITVHGRTKEQKGRAVQKCDWEAIRRIKEALPVPVFANGGVASLSDYDRCLRETRCDGVMSSEAVLERPGFFSDNVSSITGRTSTQDDLVLEYLELVKESPPHSRGRVSISCLRAHLFKCLFSGLATRTDLRARLTKARSAQEMA 907
            R+IGSPKRVVAPMVDQSELAFR L R +G++LCYTPM++S+ F+ S+ YR   F+ H  DRPL VQFCG+DP  +LA+A+ VE  CDAVDLNLGCPQGIARKGRYG+FL++E  ++R IVSTLS NLSIPVT K+R+     +T+  C +L SAG  ++ VHGRTKE    AV++ DW+ IR IK+ L +PV ANGG+    D DRCL  T CDGVMSSEA+LE P  F     S         ++  +YL+  +E PP S        ++AHLFK LF  L   TDLR  L K+ +  +MA
Sbjct:   48 RAIGSPKRVVAPMVDQSELAFRMLTRHHGAELCYTPMFHSRLFSESAEYRAKMFEKHMNDRPLVVQFCGNDPQTVLAAARHVEAHCDAVDLNLGCPQGIARKGRYGSFLMKEKDVVRSIVSTLSENLSIPVTVKIRVFPDRQETLEFCDMLQSAGCDLLVVHGRTKEMNKTAVREVDWDIIREIKQRLTIPVLANGGIEVPEDVDRCLEATGCDGVMSSEAILENPALFGSERPSFM-------EMAKQYLDFAREYPPASE-----KIIKAHLFKILFQDLRVHTDLRTELAKSPNRDDMA 337          
BLAST of mRNA_H-elongata_contig8266.15911.1 vs. uniprot
Match: A0A067D039_SAPPC (Dus domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D039_SAPPC)

HSP 1 Score: 322 bits (826), Expect = 1.430e-103
Identity = 156/296 (52.70%), Postives = 210/296 (70.95%), Query Frame = 2
Query:   17 PKRVVAPMVDQSELAFRRLCRRYGSDLCYTPMYNSKCFAVSSHYRNTNFDPHPEDRPLFVQFCGHDPALLLASAKFVENDCDAVDLNLGCPQGIARKGRYGAFLLEEWALLRDIVSTLSRNLSIPVTCKVRLLDSVDDTISMCKILVSAGARIITVHGRTKEQKGRAVQKCDWEAIRRIKEALPVPVFANGGVASLSDYDRCLRETRCDGVMSSEAVLERPGFFSDNVSSITGRTSTQDDLVLEYLELVKESPPHSRGRVSISCLRAHLFKCLFSGLATRTDLRARLTKARSAQEM 904
            PK ++APMVDQSELA+R L R+YG DLCYTPM +++ F   + YR+T +   PEDRPLFVQFCG+DPA++L +AK V++ CDAVDLNLGCPQGIARKGRYGAFL+ E  ++R+IVSTLSR L++PV+CK+RLL   +DT++ C +LV AG   + +HGRTKE   + V++CDW++I+R+++ LP+PVFANGG+ +  D   CL  T  +GVMSSE +LE P  F+ N    TG   +Q DL LEY+    + PP  +       LRAHLFK LF  L   TDLR  + + ++  E+
Sbjct:   49 PKTILAPMVDQSELAYRMLVRKYGVDLCYTPMIHARMFRDDTTYRSTAWQVVPEDRPLFVQFCGNDPAIVLEAAKHVQDGCDAVDLNLGCPQGIARKGRYGAFLMHEPDVVREIVSTLSRELTVPVSCKIRLLPDYEDTLAFCNMLVDAGCCWLVIHGRTKEMNKQLVRECDWDSIKRLRKELPIPVFANGGIENDEDVAACLAATEAEGVMSSEGILEFPALFTGNKDPTTGEIVSQIDLALEYMAWAAKFPPPEKF------LRAHLFKMLFQELKVFTDLREAIGQGQTHAEL 338          
BLAST of mRNA_H-elongata_contig8266.15911.1 vs. uniprot
Match: A0A485KZS2_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KZS2_9STRA)

HSP 1 Score: 320 bits (821), Expect = 4.690e-103
Identity = 157/298 (52.68%), Postives = 209/298 (70.13%), Query Frame = 2
Query:   17 PKRVVAPMVDQSELAFRRLCRRYGSDLCYTPMYNSKCFAVSSHYRNTNFDPHPEDRPLFVQFCGHDPALLLASAKFVENDCDAVDLNLGCPQGIARKGRYGAFLLEEWALLRDIVSTLSRNLSIPVTCKVRLLDSVDDTISMCKILVSAGARIITVHGRTKEQKGRAVQKCDWEAIRRIKEALPVPVFANGGVASLSDYDRCLRETRCDGVMSSEAVLERPGFFSDNVSSITGRTSTQDDLVLEYLELVKESPPHSRGRVSISCLRAHLFKCLFSGLATRTDLRARLTKARSAQEMAS 910
            PKR+VAPMVDQSELAFR L R+YG+DLCYTPM++++ F   + YR T +   P+DRPLFVQFCG++P ++L +A++VE+DCDAVDLNLGCPQGIA+KGRYGAFL+ E  ++R IV  LS NLS PV+CK+RLL   +DT++   +L+ AG   + VHGRTKE     V++CDW++I R+K+ LP+PVFANGGV    D +RC+  T   GVMSSE +LE P  F++N     G+   Q D+ LEYL   K+ PP  +       +RAHLFK LF  L   TDLR R+   +S + +A+
Sbjct:   30 PKRIVAPMVDQSELAFRMLTRKYGADLCYTPMFHARMFQEDATYRATAWQVEPKDRPLFVQFCGNNPDVVLNAARYVEHDCDAVDLNLGCPQGIAKKGRYGAFLMHEPEVVRTIVEKLSANLSCPVSCKIRLLPKYEDTLAFANMLIDAGCCWLVVHGRTKEMNKHLVRECDWDSIARLKQDLPIPVFANGGVECDDDVERCMEHTNVQGVMSSEGILELPALFANNKDE-HGQPLRQIDIALEYLAFAKQYPPPDKF------IRAHLFKILFQELREHTDLRERVGLGQSHEALAA 320          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8266.15911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPV1_ECTSI2.830e-18180.72Dus domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z5Z1_9STRA4.330e-10854.64Putative tRNA-dihydrouridine synthase (Fragment) n... [more]
A0A6G0WW03_9STRA7.060e-10754.05tRNA-dihydrouridine synthase n=1 Tax=Aphanomyces e... [more]
A0A1V9Z9A1_9STRA2.250e-10652.63tRNA-dihydrouridine synthase n=1 Tax=Thraustotheca... [more]
A0A1V9ZQY0_9STRA3.360e-10551.83tRNA-dihydrouridine synthase n=1 Tax=Achlya hypogy... [more]
W7TDH4_9STRA1.580e-10455.70Dihydrouridine synthase n=1 Tax=Nannochloropsis ga... [more]
A0A024TEX3_9STRA3.250e-10453.56Dus domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A2D4BU30_PYTIN3.450e-10453.97Dus domain-containing protein n=1 Tax=Pythium insi... [more]
A0A067D039_SAPPC1.430e-10352.70Dus domain-containing protein n=2 Tax=Saprolegnia ... [more]
A0A485KZS2_9STRA4.690e-10352.68tRNA-dihydrouridine synthase n=1 Tax=Aphanomyces s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8266contigH-elongata_contig8266:223..5156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score504.6
Seed ortholog evalue3.5e-140
Seed eggNOG ortholog2880.D8LPV1
KEGG koko:K05542,ko:K05545
EggNOG free text desc.tRNA dihydrouridine synthase activity
EggNOG OGsCOG0042@1,KOG2335@2759
EC1.3.1.88,1.3.1.90
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons7
Model size1341
Cds size993
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931232.8509383-UTR-H-elongata_contig8266:222..2591622931232.8509383-UTR-H-elongata_contig8266:222..259Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8266 223..259 +
1691679752.6120262-UTR-H-elongata_contig8266:222..2591691679752.6120262-UTR-H-elongata_contig8266:222..259Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8266 223..259 +
1622931233.1823878-UTR-H-elongata_contig8266:4845..51561622931233.1823878-UTR-H-elongata_contig8266:4845..5156Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8266 4846..5156 +
1691679752.6793442-UTR-H-elongata_contig8266:4845..51561691679752.6793442-UTR-H-elongata_contig8266:4845..5156Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8266 4846..5156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931233.0707452-CDS-H-elongata_contig8266:259..3631622931233.0707452-CDS-H-elongata_contig8266:259..363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8266 260..363 +
1691679752.6217504-CDS-H-elongata_contig8266:259..3631691679752.6217504-CDS-H-elongata_contig8266:259..363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8266 260..363 +
1622931233.0900514-CDS-H-elongata_contig8266:1796..19351622931233.0900514-CDS-H-elongata_contig8266:1796..1935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8266 1797..1935 +
1691679752.6298862-CDS-H-elongata_contig8266:1796..19351691679752.6298862-CDS-H-elongata_contig8266:1796..1935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8266 1797..1935 +
1622931233.1048548-CDS-H-elongata_contig8266:2403..24981622931233.1048548-CDS-H-elongata_contig8266:2403..2498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8266 2404..2498 +
1691679752.6375947-CDS-H-elongata_contig8266:2403..24981691679752.6375947-CDS-H-elongata_contig8266:2403..2498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8266 2404..2498 +
1622931233.1199315-CDS-H-elongata_contig8266:2818..29141622931233.1199315-CDS-H-elongata_contig8266:2818..2914Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8266 2819..2914 +
1691679752.6452827-CDS-H-elongata_contig8266:2818..29141691679752.6452827-CDS-H-elongata_contig8266:2818..2914Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8266 2819..2914 +
1622931233.1326163-CDS-H-elongata_contig8266:3194..33411622931233.1326163-CDS-H-elongata_contig8266:3194..3341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8266 3195..3341 +
1691679752.6534944-CDS-H-elongata_contig8266:3194..33411691679752.6534944-CDS-H-elongata_contig8266:3194..3341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8266 3195..3341 +
1622931233.149958-CDS-H-elongata_contig8266:3973..40851622931233.149958-CDS-H-elongata_contig8266:3973..4085Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8266 3974..4085 +
1691679752.661647-CDS-H-elongata_contig8266:3973..40851691679752.661647-CDS-H-elongata_contig8266:3973..4085Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8266 3974..4085 +
1622931233.1654892-CDS-H-elongata_contig8266:4545..48451622931233.1654892-CDS-H-elongata_contig8266:4545..4845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8266 4546..4845 +
1691679752.66946-CDS-H-elongata_contig8266:4545..48451691679752.66946-CDS-H-elongata_contig8266:4545..4845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8266 4546..4845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8266.15911.1prot_H-elongata_contig8266.15911.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8266 260..4845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8266.15911.1

>prot_H-elongata_contig8266.15911.1 ID=prot_H-elongata_contig8266.15911.1|Name=mRNA_H-elongata_contig8266.15911.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=331bp
MVDQSELAFRRLCRRYGSDLCYTPMYNSKCFAVSSHYRNTNFDPHPEDRP
LFVQFCGHDPALLLASAKFVENDCDAVDLNLGCPQGIARKGRYGAFLLEE
WALLRDIVSTLSRNLSIPVTCKVRLLDSVDDTISMCKILVSAGARIITVH
GRTKEQKGRAVQKCDWEAIRRIKEALPVPVFANGGVASLSDYDRCLRETR
CDGVMSSEAVLERPGFFSDNVSSITGRTSTQDDLVLEYLELVKESPPHSR
GRVSISCLRAHLFKCLFSGLATRTDLRARLTKARSAQEMASMALRYLFIL
IFLLQRYLFESMRFPMLGALRFATKSFDHT*
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mRNA from alignment at H-elongata_contig8266:223..5156+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8266.15911.1 ID=mRNA_H-elongata_contig8266.15911.1|Name=mRNA_H-elongata_contig8266.15911.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4934bp|location=Sequence derived from alignment at H-elongata_contig8266:223..5156+ (Himanthalia elongata Himel1 dioecious)
CAGGTCTATCGGGAGTCCCAAACGAGTCGTTGCCCCGATGGTGGACCAGT CCGAGCTCGCCTTTCGGCGTCTGTGTAGGCGGTACGGGAGCGACTTGTGT TACACGCCCATGTATAACAGCAAATGCTTCGCCGTCAGCAGGTATGTCAA TGTGGCGAGACAGAGATGTAAAACTTAGATGGGTAGAACATATTTTTTGT GTGTGGATGTGTGTGCTTTCCTGACGATGCTGCATTCCTGGTGACATCTT CACCATCGTGACAATGATAAACGTGTGTTTGTCACAGCAGAGCCGCAGGT TTACCCCATCGGCGCCTGATTGGATCCTGCCATTTCAGCTTGCGTTTTCC GACCCTGTCGTATGGAGTACATCGAATTACACAGTCTATTCGCGATGTCC CGCCAACGTTGCATTCTGAAAATCATTGCACATGATCTAATATCGTAGGG GCCCGTGTCTCATGCAGCATATCCGTATCCAGCTATCCGGCATCCAACCC AGCACTACTCTCGTGATGTCCGCGTTCCTGACACAGCCAGTGCGCCCAGC TGTAGTTCTCAGCAGAGCCGTGCACTCTCACGAAAACTACTTACCAACTC TAGCACCAACATTGGCTTCAAATTGAAATGGAGGCAGAAAATGAGGCTGG GGGAACTTCACATCGTGCACCAGGCACACAACGGTGGTCCTCCCGCTTCG AAACTGCCACCCCACCCCACCCCACCCCCAGTGGATATGCCCAGGAAAGG AACGACTGCTACATGGAGCTGGTAGATAGTCTTTGTTTACTCTGCTGACT GAACTACAGGCGGTGTACGAATATATCCGCGCGCACCTTATATCAACCTG CCATAATCCGGACGCGTCCACGGCGCTTTTTTTTCTCCATCCTTATGGGG GAGTTTGTTCTGTGTGTCCTGTGAGCTCGGAGAGCTCAGACACCTCGGTC GAAGATTGTTGTTGTTTCCCTCCGAAAGGTCCCAAAGGGGGTGGAACGCA TCACATTCTATAGGATGCCTGCTGAACGATGGGCTGTTGGAAAGCCCTAG AGCAATCAAATACTTACGAGAGTGCTCCAGGAGTACTCATAAGCAGATTA TAGTCTTAATACCGCAGTGTAGTGTAGGTGGTATGCATGCGGCGCAAAAT ATCTTTGTGATACTTGGTAATATATAGTATATAGTGTAGTATAGTATACA GTATAGTATATTATACAGTATATTATAGCATAGTATAGTATAGTACGAAG TATATCATAGTGCAGTATAGTAAAGTACAATATATAGTAACGTTCGCTGA ACGTGCAATATTTGGTTACCCGGTGTGTCATGTCCAGTGTCCGATTAAAC CATGGCCATGTCATGGCATGCCTGGTTAGGCGTGGCAAACGAAAGGGTGA TGACTAAAACCTGGTATTGTACCATCCTTGTGAAACGCAAGTCTAGACGA CGAAAACCGGGTATCTTATCGCTCCCTCCCGACATTGTTAGGATGCGTGG TCCACGCTCGTCATGATATCACATGCGTTTAACATAAGTACCCCCCCTCC CACCCCTCCCCCACTGACATGCAGTCATTATCGCAACACCAACTTTGACC CACACCCCGAGGATCGCCCCCTCTTCGTACAGTTCTGCGGGCACGATCCC GCGCTGCTCCTGGCGTCCGCGAAGTTCGTGGAAAATGATTGCGACGCGGT AGACTTGAACCTGGTGAGCCCCTCGCGCAAGGCTGATGAGCGCACTTGTG GAAAGTCGAAGGAGACTACTGCCGCTGCCGCCGTTTGTTGGCCTTTGGGC AAGTTCCTGTATCCAAAGCCGAACAAAAACTGCAGCATGCAACGCGTAAG GAAACCCAGGAAATCGTTTGAAAAAGGAAAAGCTTGACAAAGTTCAGCTC CTCGGGGGAGGCTACATTTATTGAGGGGAGGGGCTTGGAGAGAGAATGCT AAAAAGAGACGGCGTTCTGCAGCAGCCGTTGGTCGGAGTAAATGTCTAAG ATATTTAGAGCGGGATATATCAAATAACCGATAGACACAGGTTGTTCTGA GGATCGCGGAAAGGCAGCGTACTCGATGCTGAAGCGATCAAATCCCGGGC CAATCTATGAAGCCATTTGAGCCCACCCGACCGATCGGCGGCACACCTCG CGTGGTACGTTCTGTGAACACGCTCGAGCAGGGTTGTCCGCAGGGTATCG CACGGAAGGGACGGTACGGCGCCTTCTTGCTGGAAGAGTGGGCTCTCTTA CGGGACATCGTGAGCACCCTGTCCAGGTACCGCTCGGAATCGAGGCTTGT GTGCTTTTGCTCGCCTGCTTTTGGTATTTTCTGGCGAAGTCGTCCACCCC GTCTAGCTCACGCATTTGCTCAACCTGTGTCCGCGTAAATGAAGAGATAT GATGCGGCAACTCTCCTGGCCTGCACGGTGCCTCAAAGCAACGCGCGCAT GGCATGAAGCTTGCTTCCATTCGACTGCGCCGCTGCGAGACGGGTGGTGT AACGTGTAGGCCACTGGGAGCCTCGAGTTTCTGCCCGCCGCTATTTTTTT TTCTTTTTTTTTTTTTTTGTTGGCCGCCTTCTTGAACCTCCAACAGGAAT CTGTCCATACCGGTGACTTGCAAGGTGCGACTGCTGGATTCAGTGGATGA CACCATCAGCATGTGCAAGATCCTCGTATCGGCGGGGGCCAGGTCAGGAC TCTCTGGTCACCCCGCGCAAGAATTGAACTTAACAAATAGCTGGGTGTGT GGAAACTCTCCGTAACCGGGAGACCATGCGCAGCGGGTTTCATTGACAAT GTGGCTCTGAAGCACTGCGTGGAAGGAAATTGATGAATGGGGAGGGAGCT GGGTTGGCTGAACTCAATGTTTATCGTTGCCGTATGTGGACAGCTCTGTT TCCAATAATTTTCAAAGAGTGACCCGAAAGTGTCCGGTTGCAACATCCAT CGCGCCGCATGGGCCGCGGAAGGATCATAACGGTACACGGGCGAACGAAG GAGCAAAAGGGAAGGGCAGTACAAAAGTGTGACTGGGAGGCCATCCGAAG GATCAAGGAGGCGCTACCGGTGCCGGTGTTTGCAAACGGAGGAGTCGCTT CCCTCTCGGACTACGATCGGTATGACATGCTCCCGATGCTGCGTTACGTA ACGGGTCATTTCGATATGTAGTTGTTTGTTTGTATCAACTTCGTTGATCG CGCGCCATTTTTTTCCTTCGAAACTCGACAGCGTGCTCATTCCGCGTTTT TTTATCACTAGATTAAGCAACACAACAATTAATTGCTGATTTTTAGGAAT ACGCCATGGGAAAAAATGACAACTAGGCTACACTGTCACTATTTATTCTC ATTATAGACTTACAAAATATTCTCTGAGAGCGGGTCCAAGTTGGGGTTGT TGGTAGGATTGGGAGGGGGGGGGGGGAAGCATGCGCGTACCCCCCCGCGT GCCTTCAGATTACATGCGTTNNNNNNNNNNCTCTTTTTTTTTTTTTTCTT ATAAAAATTAAAAAAAATTTTTCGGGGGGGGGGGGGGGGGGGGGGGTTGG GGGGGGGGGGGGGGGGGGGGGGGGGGGAAGCATGCGCGTACACCCCCGCG TGCCTTCAGATTACATGCGTTTGTTTGAAGGAACGCATGAGTTCGATTTA CTGCCTGGCGAGTATCATCCTTCCGTTGTGTCCCTCTCGGCCATATTTTC TCTGAACGAGAGCTCGAAACGGCCTCTCGTGTCCTACATTCGCGCGAGCA GTTGCCTACGAGAAACGAGATGCGACGGGGTGATGTCCTCGGAAGCCGTG CTGGAACGCCCCGGATTTTTCTCGGATAACGTTTCTTCCATCACTGGCAG AACATCTACCCAGGTGCGTTGTTACAATGATCGCACAAATGAACAGCCGC TCTGTCCGTGTTGGTGTCTCTTTTCGCTCGTGAAGGCTTTTCGCGACGTC TCCGCTCCGGATGTGAGTTCATTAAGTGGCGATTCGGTTTGATGCGGGGT GGTTCGGTGATAAGCGGTGTTACCTAATGCTAAGCTGTTTATATCGGTGT TGATTCGTTTTAATGTGGTATAATACGGTGCGATAAGGTACGAAATGTGA AGCGGTACGGTGTGATAAGGTGTGATTCGGTATGATGCGGGGTTACATAT GATGCGGTCTGATTGGGCGTGGTGCGGGTTTAAGCGGTGCTATGATATGT TAACGATGTACGGTGTTAAGCGGTGCGATTCCGTGTTAGGCAGTGTGATT CCGTGGAAGGCGCTTTCATCCACACACACACACGCGCGCGTGCGCGCATG TACCTTGCTGCTCCGAGCCACAGGACGACCTCGTGCTGGAGTACCTGGAG CTCGTGAAGGAGTCGCCGCCTCACTCTCGGGGCCGAGTAAGCATCTCCTG TCTCCGCGCACACTTGTTCAAGTGCCTATTCTCAGGGTTGGCGACGAGGA CGGATTTGCGAGCGAGGCTTACTAAGGCGCGATCGGCCCAAGAAATGGCG AGTATGGCATTGAGGTACCTTTTTATTCTTATTTTCCTTTTACAGCGATA CCTTTTCGAGTCTATGAGATTTCCCATGCTTGGCGCTTTGCGCTTCGCGA CAAAATCTTTTGATCACACGTAAAAGTAAAGTATTTTTTTAAGGCTCCCC TGCATGCCATTTACGCCGCTTTCAATGGTCAGGAGGAGTTAACACTAGCC ATTCGCGAGGCTAGGCTCGCCAACCCCTCAGCTTTCGACGAGGGGAAGAC TTGGTACCGACGCCACACGAATCCACACGCGTCCGAGGAATGGGGCACGC CGCGAGAGGACTGGGAGGCGGAGGCGCTCGTGGTCGCGGAGATGCGGTCG CGAGAAACGCCCCCGGACGAGGTTGGCCTGGGCGATTCGATACTTTGGGC GGCGACGGCGGAGGAGGAGCAAGGAGGAGACTAC
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Coding sequence (CDS) from alignment at H-elongata_contig8266:223..5156+

>mRNA_H-elongata_contig8266.15911.1 ID=mRNA_H-elongata_contig8266.15911.1|Name=mRNA_H-elongata_contig8266.15911.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1986bp|location=Sequence derived from alignment at H-elongata_contig8266:223..5156+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGACCAGTCCGAGCTCGCCTTTCGGCGTCTGTGTAGGCGGTACGG
GAGCGACTTGTGTTACACGCCCATGTATAACAGCAAATGCTTCGCCGTCA
GCAGATGGTGGACCAGTCCGAGCTCGCCTTTCGGCGTCTGTGTAGGCGGT
ACGGGAGCGACTTGTGTTACACGCCCATGTATAACAGCAAATGCTTCGCC
GTCAGCAGTCATTATCGCAACACCAACTTTGACCCACACCCCGAGGATCG
CCCCCTCTTCGTACAGTTCTGCGGGCACGATCCCGCGCTGCTCCTGGCGT
CCGCGAAGTTCGTGGAAAATGATTGCGACGCGGTAGACTTGAACCTGTCA
TTATCGCAACACCAACTTTGACCCACACCCCGAGGATCGCCCCCTCTTCG
TACAGTTCTGCGGGCACGATCCCGCGCTGCTCCTGGCGTCCGCGAAGTTC
GTGGAAAATGATTGCGACGCGGTAGACTTGAACCTGGGTTGTCCGCAGGG
TATCGCACGGAAGGGACGGTACGGCGCCTTCTTGCTGGAAGAGTGGGCTC
TCTTACGGGACATCGTGAGCACCCTGTCCAGGGTTGTCCGCAGGGTATCG
CACGGAAGGGACGGTACGGCGCCTTCTTGCTGGAAGAGTGGGCTCTCTTA
CGGGACATCGTGAGCACCCTGTCCAGGAATCTGTCCATACCGGTGACTTG
CAAGGTGCGACTGCTGGATTCAGTGGATGACACCATCAGCATGTGCAAGA
TCCTCGTATCGGCGGGGGCCAGGAATCTGTCCATACCGGTGACTTGCAAG
GTGCGACTGCTGGATTCAGTGGATGACACCATCAGCATGTGCAAGATCCT
CGTATCGGCGGGGGCCAGGATCATAACGGTACACGGGCGAACGAAGGAGC
AAAAGGGAAGGGCAGTACAAAAGTGTGACTGGGAGGCCATCCGAAGGATC
AAGGAGGCGCTACCGGTGCCGGTGTTTGCAAACGGAGGAGTCGCTTCCCT
CTCGGACTACGATCGGATCATAACGGTACACGGGCGAACGAAGGAGCAAA
AGGGAAGGGCAGTACAAAAGTGTGACTGGGAGGCCATCCGAAGGATCAAG
GAGGCGCTACCGGTGCCGGTGTTTGCAAACGGAGGAGTCGCTTCCCTCTC
GGACTACGATCGTTGCCTACGAGAAACGAGATGCGACGGGGTGATGTCCT
CGGAAGCCGTGCTGGAACGCCCCGGATTTTTCTCGGATAACGTTTCTTCC
ATCACTGGCAGAACATCTACCCAGTTGCCTACGAGAAACGAGATGCGACG
GGGTGATGTCCTCGGAAGCCGTGCTGGAACGCCCCGGATTTTTCTCGGAT
AACGTTTCTTCCATCACTGGCAGAACATCTACCCAGGACGACCTCGTGCT
GGAGTACCTGGAGCTCGTGAAGGAGTCGCCGCCTCACTCTCGGGGCCGAG
TAAGCATCTCCTGTCTCCGCGCACACTTGTTCAAGTGCCTATTCTCAGGG
TTGGCGACGAGGACGGATTTGCGAGCGAGGCTTACTAAGGCGCGATCGGC
CCAAGAAATGGCGAGTATGGCATTGAGGTACCTTTTTATTCTTATTTTCC
TTTTACAGCGATACCTTTTCGAGTCTATGAGATTTCCCATGCTTGGCGCT
TTGCGCTTCGCGACAAAATCTTTTGATCACACGTAAGACGACCTCGTGCT
GGAGTACCTGGAGCTCGTGAAGGAGTCGCCGCCTCACTCTCGGGGCCGAG
TAAGCATCTCCTGTCTCCGCGCACACTTGTTCAAGTGCCTATTCTCAGGG
TTGGCGACGAGGACGGATTTGCGAGCGAGGCTTACTAAGGCGCGATCGGC
CCAAGAAATGGCGAGTATGGCATTGAGGTACCTTTTTATTCTTATTTTCC
TTTTACAGCGATACCTTTTCGAGTCTATGAGATTTCCCATGCTTGGCGCT
TTGCGCTTCGCGACAAAATCTTTTGATCACACGTAA
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