mRNA_H-elongata_contig8264.15909.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8264.15909.1
Unique NamemRNA_H-elongata_contig8264.15909.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8264.15909.1 vs. uniprot
Match: D7FGZ9_ECTSI (DNA repair protein RAD52 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGZ9_ECTSI)

HSP 1 Score: 265 bits (676), Expect = 4.250e-75
Identity = 133/189 (70.37%), Postives = 155/189 (82.01%), Query Frame = 2 
Query:  161 YTSERPSSSGHSAQWVFGSSKFTEEDHARIQEALNTALSWEQINSRQGCGGKKVHYLAGHTVVENANKIFGFDGWDSSILHLSLDYVEKTSDGK-WTAAATAIVRVALKNGVGHEDVGNAHLKDKDKGEVIEKAKKAAVTDATKRALRLFGDHLGGNMSNKEGLKCVERNHKQNQRDLKARQDRESAVR 724
            Y +ER  +SG  AQW+FG+ KF++EDHARIQ+ALNTALSW+QINSR G GGKKV YLAGHTV+ENANK+FGF GWDSSILHLSLDY  K+ DG+ W A ATAIVR+ + NG GHEDVGN+H+KDKDKGEV+ + KKAAVTDA KRALRLFG  LG  M +KEGLK  E  HKQNQR+LKA Q RE+ +R
Sbjct:    6 YNAERQGASGQGAQWIFGTDKFSDEDHARIQQALNTALSWDQINSRPGGGGKKVPYLAGHTVIENANKVFGFAGWDSSILHLSLDY--KSEDGRFWMAGATAIVRITVANGCGHEDVGNSHMKDKDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKETEITHKQNQRELKANQQREARMR 192
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BLAST of mRNA_H-elongata_contig8264.15909.1 vs. uniprot
Match: A0A6H5K4D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D8_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.120e-37
Identity = 68/87 (78.16%), Postives = 77/87 (88.51%), Query Frame = 2 
Query:  161 YTSERPSSSGHSAQWVFGSSKFTEEDHARIQEALNTALSWEQINSRQGCGGKKVHYLAGHTVVENANKIFGFDGWDSSILHLSLDYV 421
            Y +ER  +SG  AQW+FG+ KF++EDHARIQEALNTALSW+QINSR G GGKKV YLAGHTV+ENANK+FGF GWDSSILHLSLDYV
Sbjct:    6 YNAERQGTSGQGAQWIFGTDKFSDEDHARIQEALNTALSWDQINSRPGGGGKKVPYLAGHTVIENANKVFGFAGWDSSILHLSLDYV 92
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BLAST of mRNA_H-elongata_contig8264.15909.1 vs. uniprot
Match: UPI000644DBF2 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644DBF2)

HSP 1 Score: 132 bits (332), Expect = 1.430e-31
Identity = 66/149 (44.30%), Postives = 98/149 (65.77%), Query Frame = 2 
Query:  206 VFGSSKFTEEDHARIQEALNTALSWEQINSRQGCGGKKVHYLAGHTVVENANKIFGFDGWDSSILHLSLDYVEKTSDGKWTAAATAIVRVALKNGVGHEDVGNAHLKDKDKGEVIEKAKKAAVTDATKRALRLFGDHLGGNMSNKEGLK 652
            +FG+  +T+E+  R+   L+T L  +  + R G GG ++ YL     +E AN++FGF+GW S I+ L+LD+ E    GKW A A+AI+R+ LK+G  H+DVG    +D +KG  IE AKK AV+DA KR+LR+FG+ LG  + +K+ LK
Sbjct:    8 LFGNESYTQEEIERLAIELSTPLPRDDQSERPGPGGTRLTYLESWKAIEIANRVFGFNGWSSRIVELTLDFCEVAPSGKWRAGASAIIRIMLKDGTFHDDVGFGMREDSNKGTSIEHAKKEAVSDARKRSLRVFGNALGNKLYDKDPLK 156
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BLAST of mRNA_H-elongata_contig8264.15909.1 vs. uniprot
Match: A0A6H5JZ89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ89_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 8.670e-29
Identity = 67/103 (65.05%), Postives = 82/103 (79.61%), Query Frame = 2 
Query:  419 VEKTSDGK-WTAAATAIVRVALKNGVGHEDVGNAHLKDKDKGEVIEKAKKAAVTDATKRALRLFGDHLGGNMSNKEGLKCVERNHKQNQRDLKARQDRESAVR 724
            +EK+ DG+ W A ATAIVR+ + NG GHEDVGN+H+KD+DKGEV+ + KKAAVTDA KRALRLFG  LG  M++KEGLK  E  HKQNQR+LKA Q RE+ +R
Sbjct:    7 LEKSEDGRFWMAGATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMTDKEGLKETEITHKQNQRELKANQQREARMR 109
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BLAST of mRNA_H-elongata_contig8264.15909.1 vs. uniprot
Match: A0A5J5EZ93_9PEZI (Uncharacterized protein n=1 Tax=Sphaerosporella brunnea TaxID=1250544 RepID=A0A5J5EZ93_9PEZI)

HSP 1 Score: 131 bits (330), Expect = 9.760e-29
Identity = 67/149 (44.97%), Postives = 94/149 (63.09%), Query Frame = 2 
Query:  218 SKFTEEDHARIQEALNTALSWEQINSRQGCGGKKVHYLAGHTVVENANKIFGFDGWDSSILHLSLDYVEKTSDGKWTAAATAIVRVALKNGVGHEDVGNAHLKDKDKGEVIEKAKKAAVTDATKRALRLFGDHLGGNMSNKEGLKCVER 664
            S +T  D A +Q  L+  L  E I+SR G GGKKVHY+     +  AN++FGF+GW SSI ++ +D++++  DGKW+   +  VRV LK+G  HEDVG   +++  K +V EKAKK   TD  KRALR FG+ LG  + +KE L  + R
Sbjct:   15 SPYTAIDIATLQAKLDQQLGPEFISSRPGAGGKKVHYIQADKCINLANQVFGFNGWSSSITNMEVDFLDQGKDGKWSVGISVTVRVTLKDGTYHEDVGYGQMENGKKAQVFEKAKKEGTTDGLKRALRSFGNVLGNCLYDKEYLAKISR 163
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BLAST of mRNA_H-elongata_contig8264.15909.1 vs. uniprot
Match: A0A517LLL4_9PEZI (Uncharacterized protein n=1 Tax=Venturia effusa TaxID=50376 RepID=A0A517LLL4_9PEZI)

HSP 1 Score: 131 bits (330), Expect = 2.740e-28
Identity = 68/148 (45.95%), Postives = 98/148 (66.22%), Query Frame = 2 
Query:  218 SKFTEEDHARIQEALNTALSWEQINSRQGCGGKKVHYLAGHTVVENANKIFGFDGWDSSILHLSLDYVEKTSDGKWTAAATAIVRVALKNGVGHEDVGNAHLKDKD-KGEVIEKAKKAAVTDATKRALRLFGDHLGGNMSNKEGLKCV 658
            S++T ++ A++Q  L+  L  E I+SRQG GG KVHYLA   V+  AN++FGF+GW S I  +++DYV+   DG+ T   + IVR+ L++G  HED+G   +K+ + KG   EKAKK A TDA KRALR FG+ LG  + +K  L+ +
Sbjct:   26 SEYTAQEIAQLQSRLDKQLGPEYISSRQGPGGGKVHYLAAEKVINLANEVFGFNGWSSEIKDVTIDYVDIEKDGRITMGCSIIVRITLRDGTHHEDIGYGEIKNANGKGAAFEKAKKEAATDAVKRALRTFGNVLGNCLYDKSYLQKI 173
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BLAST of mRNA_H-elongata_contig8264.15909.1 vs. uniprot
Match: A0A8H3YIV5_VENIN (Uncharacterized protein n=1 Tax=Venturia inaequalis TaxID=5025 RepID=A0A8H3YIV5_VENIN)

HSP 1 Score: 130 bits (327), Expect = 2.990e-28
Identity = 67/148 (45.27%), Postives = 98/148 (66.22%), Query Frame = 2 
Query:  218 SKFTEEDHARIQEALNTALSWEQINSRQGCGGKKVHYLAGHTVVENANKIFGFDGWDSSILHLSLDYVEKTSDGKWTAAATAIVRVALKNGVGHEDVGNAHLKDKD-KGEVIEKAKKAAVTDATKRALRLFGDHLGGNMSNKEGLKCV 658
            S+++ ++ A++Q  L+  L  E I+SRQG GG KVHYLA   V+  AN++FGF+GW S I  +++DYV+   DG+ T   + IVR+ L++G  HED+G   +K+ + KG   EKAKK A TDA KRALR FG+ LG  + +K  L+ +
Sbjct:  204 SEYSAQEIAQLQSRLDKQLGPEYISSRQGPGGGKVHYLAAEKVINLANEVFGFNGWSSEIKDVTIDYVDVEKDGRITMGCSIIVRITLRDGTHHEDIGYGEIKNANGKGAAFEKAKKEAATDAVKRALRTFGNVLGNCLYDKSYLQKI 351
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BLAST of mRNA_H-elongata_contig8264.15909.1 vs. uniprot
Match: A0A8H3V3B0_VENIN (Uncharacterized protein n=2 Tax=Venturia inaequalis TaxID=5025 RepID=A0A8H3V3B0_VENIN)

HSP 1 Score: 130 bits (327), Expect = 6.200e-28
Identity = 67/148 (45.27%), Postives = 98/148 (66.22%), Query Frame = 2 
Query:  218 SKFTEEDHARIQEALNTALSWEQINSRQGCGGKKVHYLAGHTVVENANKIFGFDGWDSSILHLSLDYVEKTSDGKWTAAATAIVRVALKNGVGHEDVGNAHLKDKD-KGEVIEKAKKAAVTDATKRALRLFGDHLGGNMSNKEGLKCV 658
            S+++ ++ A++Q  L+  L  E I+SRQG GG KVHYLA   V+  AN++FGF+GW S I  +++DYV+   DG+ T   + IVR+ L++G  HED+G   +K+ + KG   EKAKK A TDA KRALR FG+ LG  + +K  L+ +
Sbjct:   26 SEYSAQEIAQLQSRLDKQLGPEYISSRQGPGGGKVHYLAAEKVINLANEVFGFNGWSSEIKDVTIDYVDVEKDGRITMGCSIIVRITLRDGTHHEDIGYGEIKNANGKGAAFEKAKKEAATDAVKRALRTFGNVLGNCLYDKSYLQKI 173
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BLAST of mRNA_H-elongata_contig8264.15909.1 vs. uniprot
Match: A0A098VV24_9MICR (Uncharacterized protein n=1 Tax=Mitosporidium daphniae TaxID=1485682 RepID=A0A098VV24_9MICR)

HSP 1 Score: 123 bits (308), Expect = 8.250e-28
Identity = 64/150 (42.67%), Postives = 94/150 (62.67%), Query Frame = 2 
Query:  215 SSKFTEEDHARIQEALNTALSWEQINSRQGCGGKKVHYLAGHTVVENANKIFGFDGWDSSILHLSLDYVEKTSDGKWTAAATAIVRVALKNGVGHEDVGNAHLK-DKDKGEVIEKAKKAAVTDATKRALRLFGDHLGGNMSNKEGLKCVE 661
            SS +TE +   +QE L+  L+  +I+ R G GG K+ Y+ G  V+  AN+IFGF+GW S I+ +S D+V++ S G+     +  VR+ L +G  H+D+G    +  K KG   EKA+K AVTDATKRALR FG+ LG  M +K  L+ ++
Sbjct:   27 SSAYTEHERQELQEKLDQGLTLSEISQRPGIGGVKLAYIEGWRVISIANEIFGFNGWSSEIMQISTDFVDEDSQGRVCIGISCTVRIYLSDGTFHDDIGYGISEXQKSKGAAFEKARKEAVTDATKRALRCFGNRLGNCMYDKSFLRSLQ 176
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BLAST of mRNA_H-elongata_contig8264.15909.1 vs. uniprot
Match: A0A2P6NIG4_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NIG4_9EUKA)

HSP 1 Score: 123 bits (309), Expect = 9.010e-28
Identity = 67/159 (42.14%), Postives = 97/159 (61.01%), Query Frame = 2 
Query:  206 VFGSSKFTEEDHARIQEALNTALSWEQINSRQGCGGKKVHYLAGHTVVENANKIFGFDGWDSSILHLSLDYVEKTSDGKWTAAATAIVRVALKNGVGHEDVGNAHLKDKDKGEVIEKAKKAAVTDATKRALRLFGDHLGGNMSNKEGLKCVERNHKQNQ 682
             FG  ++T E+ + I   L   L   ++  R G G + V YL     +E AN+IFG+DGW SS+++LS D++E     +++   +A+VRV LK+G  HEDVG     +  KG  IEKAKK A++DA KRALRLFG+ LG ++ +KE +K  +   K NQ
Sbjct:   12 TFGELEYTNEEKSAIGNILEQKLGANEVAFRTGAGSQSVGYLEAWRAIELANEIFGYDGWSSSVINLSQDFLEGEGQ-RFSCGISAVVRVQLKDGSFHEDVGYGTADNMKKGLAIEKAKKEAISDALKRALRLFGNRLGNSVYDKEHMKANQAQQKANQ 169
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8264.15909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGZ9_ECTSI4.250e-7570.37DNA repair protein RAD52 homolog n=1 Tax=Ectocarpu... [more]
A0A6H5K4D8_9PHAE1.120e-3778.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000644DBF21.430e-3144.30hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A6H5JZ89_9PHAE8.670e-2965.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5J5EZ93_9PEZI9.760e-2944.97Uncharacterized protein n=1 Tax=Sphaerosporella br... [more]
A0A517LLL4_9PEZI2.740e-2845.95Uncharacterized protein n=1 Tax=Venturia effusa Ta... [more]
A0A8H3YIV5_VENIN2.990e-2845.27Uncharacterized protein n=1 Tax=Venturia inaequali... [more]
A0A8H3V3B0_VENIN6.200e-2845.27Uncharacterized protein n=2 Tax=Venturia inaequali... [more]
A0A098VV24_9MICR8.250e-2842.67Uncharacterized protein n=1 Tax=Mitosporidium daph... [more]
A0A2P6NIG4_9EUKA9.010e-2842.14Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8264contigH-elongata_contig8264:2600..9120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score266.9
Seed ortholog evalue7.7e-69
Seed eggNOG ortholog2880.D7FGZ9
Preferred nameRAD52
KEGG koko:K01288,ko:K10873
KEGG Pathwayko03440,map03440
GOsGO:0000003,GO:0000018,GO:0000150,GO:0000228,GO:0000278,GO:0000280,GO:0000709,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000727,GO:0000729,GO:0000730,GO:0000733,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006277,GO:0006281,GO:0006282,GO:0006301,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007530,GO:0007531,GO:0007533,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010520,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010639,GO:0010792,GO:0010946,GO:0010947,GO:0010948,GO:0016043,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0031297,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032200,GO:0032392,GO:0032502,GO:0032505,GO:0032991,GO:0032993,GO:0033043,GO:0033260,GO:0033554,GO:0034599,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035825,GO:0035861,GO:0040020,GO:0042221,GO:0042592,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044786,GO:0045002,GO:0045003,GO:0045005,GO:0045027,GO:0045128,GO:0045165,GO:0045786,GO:0045835,GO:0045910,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0048583,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051259,GO:0051260,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0060255,GO:0060631,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090329,GO:0090734,GO:0090735,GO:0097159,GO:0097617,GO:0110026,GO:0110027,GO:0110029,GO:0140013,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902298,GO:1902969,GO:1903046,GO:1903047,GO:1990426,GO:1990505,GO:1990814,GO:2000104,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2000819,GO:2001020
EggNOG free text desc.double-strand break repair via single-strand annealing
EggNOG OGsCOG5055@1,KOG4141@2759
EC3.4.16.6
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03400
Hectar predicted targeting categoryother localisation
Exons7
Model size2495
Cds size621
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931232.552786-UTR-H-elongata_contig8264:2599..35091622931232.552786-UTR-H-elongata_contig8264:2599..3509Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8264 2600..3509 -
1691679752.4757369-UTR-H-elongata_contig8264:2599..35091691679752.4757369-UTR-H-elongata_contig8264:2599..3509Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8264 2600..3509 -
1622931232.5646482-UTR-H-elongata_contig8264:4880..56961622931232.5646482-UTR-H-elongata_contig8264:4880..5696Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8264 4881..5696 -
1691679752.486486-UTR-H-elongata_contig8264:4880..56961691679752.486486-UTR-H-elongata_contig8264:4880..5696Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8264 4881..5696 -
1622931232.6985564-UTR-H-elongata_contig8264:8972..91201622931232.6985564-UTR-H-elongata_contig8264:8972..9120Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8264 8973..9120 -
1691679752.5573633-UTR-H-elongata_contig8264:8972..91201691679752.5573633-UTR-H-elongata_contig8264:8972..9120Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8264 8973..9120 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931232.5767848-CDS-H-elongata_contig8264:5696..58221622931232.5767848-CDS-H-elongata_contig8264:5696..5822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8264 5697..5822 -
1691679752.4949946-CDS-H-elongata_contig8264:5696..58221691679752.4949946-CDS-H-elongata_contig8264:5696..5822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8264 5697..5822 -
1622931232.5917573-CDS-H-elongata_contig8264:6064..61421622931232.5917573-CDS-H-elongata_contig8264:6064..6142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8264 6065..6142 -
1691679752.5067394-CDS-H-elongata_contig8264:6064..61421691679752.5067394-CDS-H-elongata_contig8264:6064..6142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8264 6065..6142 -
1622931232.6140049-CDS-H-elongata_contig8264:6359..65061622931232.6140049-CDS-H-elongata_contig8264:6359..6506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8264 6360..6506 -
1691679752.5158627-CDS-H-elongata_contig8264:6359..65061691679752.5158627-CDS-H-elongata_contig8264:6359..6506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8264 6360..6506 -
1622931232.628867-CDS-H-elongata_contig8264:6948..70471622931232.628867-CDS-H-elongata_contig8264:6948..7047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8264 6949..7047 -
1691679752.5256722-CDS-H-elongata_contig8264:6948..70471691679752.5256722-CDS-H-elongata_contig8264:6948..7047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8264 6949..7047 -
1622931232.645913-CDS-H-elongata_contig8264:7295..73581622931232.645913-CDS-H-elongata_contig8264:7295..7358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8264 7296..7358 -
1691679752.535878-CDS-H-elongata_contig8264:7295..73581691679752.535878-CDS-H-elongata_contig8264:7295..7358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8264 7296..7358 -
1622931232.6829665-CDS-H-elongata_contig8264:8864..89721622931232.6829665-CDS-H-elongata_contig8264:8864..8972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8264 8865..8972 -
1691679752.5457637-CDS-H-elongata_contig8264:8864..89721691679752.5457637-CDS-H-elongata_contig8264:8864..8972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8264 8865..8972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8264.15909.1prot_H-elongata_contig8264.15909.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8264 5697..8972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8264.15909.1

>prot_H-elongata_contig8264.15909.1 ID=prot_H-elongata_contig8264.15909.1|Name=mRNA_H-elongata_contig8264.15909.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=207bp
MEAPYTSERPSSSGHSAQWVFGSSKFTEEDHARIQEALNTALSWEQINSR
QGCGGKKVHYLAGHTVVENANKIFGFDGWDSSILHLSLDYVEKTSDGKWT
AAATAIVRVALKNGVGHEDVGNAHLKDKDKGEVIEKAKKAAVTDATKRAL
RLFGDHLGGNMSNKEGLKCVERNHKQNQRDLKARQDRESAVRSTHAPPLP
RQQQPH*
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mRNA from alignment at H-elongata_contig8264:2600..9120-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8264.15909.1 ID=mRNA_H-elongata_contig8264.15909.1|Name=mRNA_H-elongata_contig8264.15909.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6521bp|location=Sequence derived from alignment at H-elongata_contig8264:2600..9120- (Himanthalia elongata Himel1 dioecious)
AGCGCGGATGACAGCGATTGGAGCGCAAATTGAACAGTACGGGTGTTGAA
TAAATCAAACCCCTTACTATTAATGCAAGCAAAGTTTTAAAACTCCTCGT
AATCCACACCGTGGATCGTGGTGGTAAAAGATATTTTCCTCGTCGAGCAT
GGAAGCGCCCTACACCTCTGAGCGACCGTCGTCTTCGGGTCACAGTGCAC
AATGGGTCTTTGGGTCGAGTAAATTTACCGAAGAGGACCACGCGAGAATC
CAGGAGGTGATGTGAACGATGCACTAACGCCCGTTGAAATTTTGTGCATT
TCTGTGTAGGACGAGATCGTTCCATCAAAGACGCTGTTGGTTCTTTTCTC
GGGTAAGCTCACGATTCCGCGTCTTATTTCCGGCTAAACCTATCATATAT
TACCTACGTCTCACAGAAGTGCTGATCTCGGTCGATTGATCATCCATCGC
TGAAAAAAAATACGTTTTAGTACTCTGTGTTTGCTTTGGTGCGGAAGTCG
AGATGGCCCACAGAGACGAGTCTCACGTATTTCATAGTGTAAATCGCCTC
CTATATTTTCTGTGCTTTATTCCAGATGTTCACTGTGCCAATGTTGTTGT
TGGTCACACATTTAGCAGAAGGTCAACCGTATTTGGTTGCCTTCTCGTGG
TCAGCTGAACAGGGAAAATAATTTTGTGGGAAAATAGGAAGGCCAACCGG
GGGTTACTTGAATAGAGAGCGCCCGTTTCTCAAGCTACCTTGAGGACTCA
TGGCCGAGTGTCGGTGGACTCTCGATTTTGCACGCCATCGGTACTCAAAG
TAATGACCTGATAAATTCGGGATTGGCAGGATGGCGGTTGACGGTAGAGA
TGGACAATGTCGCAGAAAGTGGGAATGATCATGGGAGTACTCACCAGATT
CAGCGTGGGTTGGGAGAATGATCGAGCTGACGCGGGAGGAGACGACCGAA
CCCGTCTCGCGAGGCCAAATTATCAGGCACGAACGGGAACAGGGAAAATT
AAGTTCATTTTCGCTGTTCAGCTGACCACGAGCAGGATTGGTATACTGCT
ATATATGATGACCAACACACATTCAGCCTAGATTGGGAGAATCAGCAGGC
TGACGCGGGACGGAACTGCTGAACCCGTCTCGCGAGACCAACTTCTCAGG
CGCGAACGAGGACAGGGAAAGACCACGAGCAGAAGGCAACCAAATCCGGT
TGATCTTAATCTGCTGAAAGTTTGACCAACAACACACACACAGAGTAACA
GTGGACGACTTTTGCGACTTTGCTTGAAATTACTGCTGTTTGTACTTTTG
ACGCTCCCAACATGAGGATGTTCATCGAGTGTGCAGCTACCTCAACGACA
CCACACAGTTACCTATTACCCACGTTGGTGCCCTCCATGCGACCTGTCAT
CGATGCCTGCACGAAAATCTAACGTTAAGCTAACCGTGCAGAGCCCTCAT
TAACTACCCTGTAAACCATCCACTAAATTAAACATATTTCCTTTTCAACT
TCGCGGTTGTTGTCCCCACATGATGATGATGATTATAGGACATATGATGA
TTATAGGAAGTCAAAACACAAAATACCGGCGAGTTTCTCCTCAATGGAAC
CCAACTAAATAATGTTTGGCATTTTTTGTTTTGGTATTCAATACATCAAG
TAGAACCCAAAAATGCGAGGTCCCTGGGTTTCGAATGCATTCAGAGTTTT
CGAAGACGCCCTGACGAGATCCAGCTATTTCGTAACCATCCCAAAAACCG
TGGACACGCCAGGCGCTGAACACAGCTTTGAGCTGGGAGCAGATCAACTC
TCGACAAGGCTGTGGCGGGAAAAAGGTCAGTACAGCAAGCACTTGCTCAA
CTGCTCCGCCTTCCCCAAACAACCGTCTCTTGAGCTCGAACGGAAGGAAC
CAGCACAGACTGGCCATCGCTAGCATCAATAGAATATAGCCCGAAGGTCA
TCGACGGATCGGATACTGTGGGTGGTTTCTCTGGCACAGCATATGCTCCG
CAAAACGGCGAATGCAATGCTTGTCCTCGGTAATCTCACGACTGCTGCTC
CCTCTGCTCGATCAAAACCGAAGGTTCACTACCTCGCCGGGCACACTGTG
GTCGAGAACGCCAACAAAATATTCGGCTTCGACGGCTGGGACTCCTCCAT
CCTCCACCTAAGCCTCGACTACGTGAGTTTTTTCCGAGGTGTGATAAGGA
GGTTTGCCTTGAAAGGCTTGCGGCCAAGGAAAAAAATGAGCGGATGATAA
CTGCGGACGCATTTCACGCAAGGGTAGGTTGTCGCGTATTCCGTATCGAA
ATGACCCCGTCCTATTGGAAGGGTGGTTGCAGCCGTATAACCAAGACATG
GTTGTGCAGTATGCCCTCGGTGTAGCGGATGGTTTCGGGCAAGAACCCAG
GCCTTCAATCTCGAGCGATAGTCCTCGGCGTGCGAATAAAGGTTATCAAT
TTCAGTTTTATGTTTCGCCGCCGCTCCTGCTACTAAGGTACGTTTCAAGA
CGCCTCATTGTGGTGTAAATCCCTATGCGTAGAAGCCTCCCCACCACAAA
GGGCCTCAAGACGTAGAGCCTATTGAATCCACATAGCGTCACACACACGC
GCGCACGCACCCAGGTGGAGAAAACTTCGGACGGAAAGTGGACCGCGGCC
GCGACGGCCATCGTGAGGGTGGCGCTGAAGAACGGCGTCGGCCACGAGGA
CGTCGGCAATGCACACCTCAAGGACAAAGACAAGGGAGAAGTTATCGAGA
AGGCCAAAAAGGTATGAAATAGCCGTCCCGCCTGATGTTTTTAATTCTGT
GATCGCGATTCAATGTTGTTTGCGCTACTGTTTTGTCGAGTTTGTCGTAT
CGACTTGTGTCGGTCGCCATCCGCTTTTGGTTACGCTTGAACAATGCCTC
GGGGGCCGTCCGCGGCGGTGTCTCGTCGTCCACTCTTTTCCCTCGGTATT
CATGGTCGCACCCTTAAACCCGTCTCAGGCCGCAGTTACCGATGCGACGA
AGAGAGCGCTACGTCTGTTCGGGGACCATCTCGGCGGAAACATGTCAAAC
AAGGAGGTACAGAGGACGTGCATGAATCCAGTGAATATTTTCTGCTACAC
AGAGCGTGAATCCGCGGCCGCGGATGTTCTTTGCCGATACGATATTCATC
GTTATAATGTGAGAGTGAATCCGCGACGCGGGATGGAGCATTCCGACTGC
AATCCACTCTACTCAAATATGTTCCCATCCCCCCCCCCCTCCCCCCCATG
ATGCTCGCACTCTGGACGTTCGCGGCATATTCGCTATTTTTCTCCCAGGG
GTTGAAGTGTGTGGAGCGTAATCACAAGCAGAACCAGCGTGACCTCAAGG
CACGTCAAGATCGCGAATCCGCGGTTCGTTCGACCCACGCACCGCCGTTG
CCACGGCAGCAACAACCACATTAATTGCACCCCCACCAACAACATCAACC
GCAGCAGCGGCAGCCGAGCCGAGCGTGCAAGGTGGAAACATCGCGGGAAG
GCAGGGGAGCCGGGCACGAGACACCGCCAGTTGGATTGAGACATGAGGGC
CACCAGATTGATCCAGGATCACGGAAACCGGACCACGCCGCCCGTCAGCT
TCCACCACCACTGCAATCTAGGCAACAGCTGCAATCACCGCGCCAGCAGC
AACATCAACAAAATCGCCAGCACATCCAACAGCAGCAGCGGAGGCAGGAA
GAGCAACCTCAAGGGATCACCAATCCGCGGGGCACTCCATCAGAAAAGCC
ACGCGATCCCGTGACATCGTTTGCAGCCGTTGGCGGAGGCAATGGTAGTT
GTGGCAGTACCGGCCGTCGTCATTCCTCGCCGCGATTACAGCCGCGGGGT
AAGGGTGAAAATCTTGCGCAACCCGGCGCGTTGAGCCCGCTTTCCTCGAA
CCCAACGCCCGCTACGCTCGTTCGTCCTTTGGGCGAGTCTTCTCCGAATG
AATGTTTCCCTGTTGCCGCAATCGACGGAGTTGGCCGACGAGAACCAGCA
TTCGCCGGATGCGGCGGCGGTGGTCTCTCCGGGGGCAAGTCTGGAGGAGC
CGGGGAAGTAGTAGGACCGACCTTCCTCCACTGTAACAGCCCGGTGTTCG
AGTACTCAGTAGGCGGGGGTGGAGCGGGGAGTGCCTCGGCCTCAGCACCA
CCGGCGAGACCAACAAATTATACTTCCAGCGTGGCGACATCGGGTACAAC
CTTAGGGAAAAAAGTGGAGGATGATTTCGGTCTCTCTCAGGTGAGGTCTG
ACAACGCTGGCGAGAATATCGCTGGACTCCCCTCGTGGTGGCGCATCATC
AAAGCTTTTGTTACGTGCAAGGGCATCAGGCCGTGTGTGTTTTCAACAAC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCACCCACCCCACCCACCAACCCACCACCCCCACCACCCNNNNNN
NNNNGGCATCGGGCCGTGTGTTTTTTCACCCCCCCCCCCCCCCCCCCCCC
GCCCCCCCATTTATATGGGATCGATGAATCAATATCGACGCCATTAATCA
CAAGCGTGTTGGTGCGCGCGAACGGTAAACAATCAAACGTCTGAGACAAC
GTCAGGGCACTCGACAGGCAGCGTATCGTGAAACATGCTTCGCGCCTTAC
GGTAGCAGTATGAGAGCATTGTGGACGATCTAGAAGCTTGCGAAAAAGAT
TACGGGGATAATCCTGCTGAGCCACCACACTCCGCACCCAACCGAACATT
TTAACCTTGGACAGTAGAGCCGGCGCTGGTGACCTTGGTCATTCCACGCG
TTACATAAGTTTTTTTATAGCCGTTTGTTCCAGGAAGCTTGGCCAGTAGC
TCAACACACGATGCAGGGTCCCCAAGCTTGCGGTGGTCCCAGACGTGACG
GGGACATAATAGGGATGTCCCCAAGGTACCAGCGCTGCGAGGAATTCGAT
TAAGCCCAGTAGGATGTAGCACCGCGTGCGCTAAGAAGGTGTGGATGTTC
GGAGGGTTGGAATGAGTTCAAGGGTTTTTAATTATTTATTATTAGTAGTA
TTATCAGTATTATTTTTGCTTTGCTTTGCTTCCTTCCCTTACTTCCTTCT
CTCTAATGAACGTACAGCTCACTATCATCTAGGATGATCTGGTTTGTCGT
CATAGTCATCATAGAAAGAATGACTTAGAATGCGCTAATAAGTGTAGATG
TTTCGATATACACACTAATAATGTATAATCAGTTCTACCTTAGACATACG
CTTATAGAAATGAATGTTCTCATAGATGTAGTCCGAAATTAATCGAGATA
TATGTACAATGCAATTATTAATATAGGCTTTACTTATTGCCTCTACCCTC
TAAAACATATACTCACGTGTGACGCTTTTGTGCTCAAAGGTAGTACAGTA
ATATACACATTCGAACCTGACGATAGTTGGTCCCCTGGACTGCACTTCTC
ACGGCGCTAAGAACGTGTGGATGTTCGAAGGGTTGGAATGCGTTCAAGTT
TTTTTTTAATAAAAATCCTCGCTTTTCGTGGTTAAAGTTTGATTTCCCCC
TTTTTCTACGCACGCGTCATTATCCAAACTGTTGACATCCTGTTTCACGC
TGCCTGTCCAGGATTACGCCTCCGCTTTCTTGGAGATTGATTCCGCCATT
CAGCGACACACTACGTCCCTGTCCTCCGGAAGCTGCCGAAGCACTGGTTC
AGGCGTCGGCGCCAGCAGCGCAAACGACGACATGCCAGTACGGCGGCAAA
CTTCCGGCACCGAAGAAGTTCACGATGTCGGAGGCGGGGGAGGTGTAGAC
ATTGGGGAGCGACTCGGCGGGCACGCGATACAGCAGCAGGGTTCGGGCTC
GCTCGCGGGGAACAAGAGGTTCCGCGGGCAGTCCAGTCGCGAACGGGTGT
AGTTAGGAATATATTATGATTTTGCTTACCCCCATCCCTCGCCTTAAGGG
TGCGGCGCGGGCAGCGGTGTTTTCTTACCGTGTAGAGTAGATAGAATATG
TAGATGACGTGCTTTCTGTTTCACGGGTTCTAGTTCCGAGATTTGCGTTC
GCTACGCAGCGGGTTTGTCACACAAAAGTAACGAGAGAAACTTTCGATTT
ATCAGCCCAAGATTCCACCCGTGCTACGTGTAGTTTTCGATACTGCGAGA
GGTGATTCGTTAGACCCGCTGTCAGGTCGGCGTGCGTGCAAAGCGCTCAT
TTTTGTTTTTTATTTCGCTTATAAAAAGCGTGATTTCTCGGTTAGCTGGT
TATAACAAAAAATTAAGTTTGTACGCCCAAAGGAGACATTTCTCTTAACT
TTATTAATATAAAAAATACAAAAGAATTGTGAATTGTGTTCAGCTCAAGC
TGTCATTCCCGAATCCGCTAGTCTACACGGCTATGTGATTGCGGGCACTA
CGCAGCCGGTTTGTTAAACAAAAGTATAGAAACTCTCGTTTTATCAATCA
AATAGTCCACCCGTGCTACGTGTAGTTTTCGATACTGCGAAAGATGATTC
GTTAGACCCGCTGCCCGGCCG
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Coding sequence (CDS) from alignment at H-elongata_contig8264:2600..9120-

>mRNA_H-elongata_contig8264.15909.1 ID=mRNA_H-elongata_contig8264.15909.1|Name=mRNA_H-elongata_contig8264.15909.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1242bp|location=Sequence derived from alignment at H-elongata_contig8264:2600..9120- (Himanthalia elongata Himel1 dioecious)
ATGGAAGCGCCCTACACCTCTGAGCGACCGTCGTCTTCGGGTCACAGTGC
ACAATGGGTCTTTGGGTCGAGTAAATTTACCGAAGAGGACCACGCGAGAA
TCCAGGAGATGGAAGCGCCCTACACCTCTGAGCGACCGTCGTCTTCGGGT
CACAGTGCACAATGGGTCTTTGGGTCGAGTAAATTTACCGAAGAGGACCA
CGCGAGAATCCAGGAGGCGCTGAACACAGCTTTGAGCTGGGAGCAGATCA
ACTCTCGACAAGGCTGTGGCGGGAAAAAGGCGCTGAACACAGCTTTGAGC
TGGGAGCAGATCAACTCTCGACAAGGCTGTGGCGGGAAAAAGGTTCACTA
CCTCGCCGGGCACACTGTGGTCGAGAACGCCAACAAAATATTCGGCTTCG
ACGGCTGGGACTCCTCCATCCTCCACCTAAGCCTCGACTACGTTCACTAC
CTCGCCGGGCACACTGTGGTCGAGAACGCCAACAAAATATTCGGCTTCGA
CGGCTGGGACTCCTCCATCCTCCACCTAAGCCTCGACTACGTGGAGAAAA
CTTCGGACGGAAAGTGGACCGCGGCCGCGACGGCCATCGTGAGGGTGGCG
CTGAAGAACGGCGTCGGCCACGAGGACGTCGGCAATGCACACCTCAAGGA
CAAAGACAAGGGAGAAGTTATCGAGAAGGCCAAAAAGGTGGAGAAAACTT
CGGACGGAAAGTGGACCGCGGCCGCGACGGCCATCGTGAGGGTGGCGCTG
AAGAACGGCGTCGGCCACGAGGACGTCGGCAATGCACACCTCAAGGACAA
AGACAAGGGAGAAGTTATCGAGAAGGCCAAAAAGGCCGCAGTTACCGATG
CGACGAAGAGAGCGCTACGTCTGTTCGGGGACCATCTCGGCGGAAACATG
TCAAACAAGGAGGCCGCAGTTACCGATGCGACGAAGAGAGCGCTACGTCT
GTTCGGGGACCATCTCGGCGGAAACATGTCAAACAAGGAGGGGTTGAAGT
GTGTGGAGCGTAATCACAAGCAGAACCAGCGTGACCTCAAGGCACGTCAA
GATCGCGAATCCGCGGTTCGTTCGACCCACGCACCGCCGTTGCCACGGCA
GCAACAACCACATTAAGGGTTGAAGTGTGTGGAGCGTAATCACAAGCAGA
ACCAGCGTGACCTCAAGGCACGTCAAGATCGCGAATCCGCGGTTCGTTCG
ACCCACGCACCGCCGTTGCCACGGCAGCAACAACCACATTAA
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