mRNA_H-elongata_contig82576.15907.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82576.15907.1
Unique NamemRNA_H-elongata_contig82576.15907.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig82576.15907.1 vs. uniprot
Match: A0A813LGN2_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LGN2_POLGL)

HSP 1 Score: 117 bits (294), Expect = 1.630e-28
Identity = 55/112 (49.11%), Postives = 75/112 (66.96%), Query Frame = 1 
Query:    1 QVAITPHYRHDGFLKNAFARYK-KFLGLFKSSESGRYSPAYDIDLMWHIHQLHPHLYARETTKIRGELLPHDDALNDRTEGAALS*CWEATQRRWTANYGGSICQKGCMFRG 333
            QVA+ PHYR   FL  A  RY  KFL L +   +  ++P+YDID +WH HQLHP  Y  +TT++ G ++ HDD++NDR+EG+ L+  WE TQ+ W   +G SICQ G M+RG
Sbjct:  189 QVAVMPHYRDKRFLTIAADRYVGKFLELKRRHPNQFFAPSYDIDCVWHTHQLHPRAYIADTTRLCGSVMDHDDSVNDRSEGSKLTSSWERTQQTWHKEFGDSICQAGGMYRG 300
[Close]
BLAST of mRNA_H-elongata_contig82576.15907.1 vs. uniprot
Match: A0A813LAB2_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LAB2_POLGL)

HSP 1 Score: 117 bits (294), Expect = 1.890e-28
Identity = 55/112 (49.11%), Postives = 75/112 (66.96%), Query Frame = 1 
Query:    1 QVAITPHYRHDGFLKNAFARYK-KFLGLFKSSESGRYSPAYDIDLMWHIHQLHPHLYARETTKIRGELLPHDDALNDRTEGAALS*CWEATQRRWTANYGGSICQKGCMFRG 333
            QVA+ PHYR   FL  A  RY  KFL L +   +  ++P+YDID +WH HQLHP  Y  +TT++ G ++ HDD++NDR+EG+ L+  WE TQ+ W   +G SICQ G M+RG
Sbjct:  200 QVAVMPHYRDKRFLTIAADRYVGKFLELKRRHPNQFFAPSYDIDCVWHTHQLHPRAYIADTTRLCGSVMDHDDSVNDRSEGSKLTSSWERTQQTWHKEFGDSICQAGGMYRG 311
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BLAST of mRNA_H-elongata_contig82576.15907.1 vs. uniprot
Match: R1DD40_EMIHU (Vint domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DD40_EMIHU)

HSP 1 Score: 115 bits (288), Expect = 1.210e-27
Identity = 55/106 (51.89%), Postives = 71/106 (66.98%), Query Frame = 1 
Query:   16 PHYRHDGFLKNAFARYKKFLGLFKSSESGRYSPAYDIDLMWHIHQLHPHLYARETTKIRGELLPHDDALNDRTEGAALS*CWEATQRRWTANYGGSICQKGCMFRG 333
            PH+    FLK +FARY+KFL L K+       P YDIDL+WH HQLHP LYA ET ++ G +L HDD+++DR+EG+ L   W+ATQ  W A YG S  ++G M RG
Sbjct:  209 PHHTEPAFLKESFARYRKFLLLTKTEPKLFSVPTYDIDLVWHCHQLHPLLYASETRRLLGTMLGHDDSVDDRSEGSKLINGWDATQAAWKAAYGESYAREGAMHRG 314
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BLAST of mRNA_H-elongata_contig82576.15907.1 vs. uniprot
Match: A0A813DUE5_POLGL (Hypothetical protein n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DUE5_POLGL)

HSP 1 Score: 111 bits (278), Expect = 3.700e-27
Identity = 51/112 (45.54%), Postives = 74/112 (66.07%), Query Frame = 1 
Query:    1 QVAITPHYRHDGFLKNAFARYK-KFLGLFKSSESGRYSPAYDIDLMWHIHQLHPHLYARETTKIRGELLPHDDALNDRTEGAALS*CWEATQRRWTANYGGSICQKGCMFRG 333
            QVA+ PHYR + FL  A  RY  KFL L +   +  ++P+YDID +WH HQLHP  Y  +TT++ G ++ HDD++NDR+E + L+  WE T++ W   +G  IC+ G M+RG
Sbjct:  200 QVAVMPHYRDNKFLTIAADRYVGKFLELKRRHPNQFFAPSYDIDCVWHAHQLHPQAYIADTTRLCGSVMDHDDSVNDRSEDSKLTSSWERTKQTWNKEFGDHICKDGGMYRG 311
[Close]
BLAST of mRNA_H-elongata_contig82576.15907.1 vs. uniprot
Match: A0A813IVB3_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IVB3_POLGL)

HSP 1 Score: 110 bits (276), Expect = 4.650e-26
Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = 1 
Query:    1 QVAITPHYRHDGFLKNAFARYK-KFLGLFKSSESGRYSPAYDIDLMWHIHQLHPHLYARETTKIRGELLPHDDALNDRTEGAALS*CWEATQRRWTANYGGSICQKGCMFRG 333
            QVA+ PHYR   FL  A  RY  KFL L +   +  ++P+YDID +WH HQLHP  Y  +TT++ G ++ HDD++NDR+E + L+  WE T++ W   +G  IC+ G M+RG
Sbjct:  189 QVAVMPHYRDKRFLTIAADRYVGKFLELKRRHPNQFFAPSYDIDCVWHAHQLHPQAYIADTTRLCGSVMDHDDSVNDRSEDSKLTSSWERTKQTWNKEFGDHICKDGGMYRG 300
[Close]
BLAST of mRNA_H-elongata_contig82576.15907.1 vs. uniprot
Match: A0A2R2MQ27_LINUN (uncharacterized protein LOC106156973 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A2R2MQ27_LINUN)

HSP 1 Score: 110 bits (274), Expect = 8.690e-26
Identity = 55/111 (49.55%), Postives = 72/111 (64.86%), Query Frame = 1 
Query:    1 QVAITPHYRHDGFLKNAFARYKKFLGLFKSSESGRYSPAYDIDLMWHIHQLHPHLYARETTKIRGELLPHDDALNDRTEGAALS*CWEATQRRWTANYGGSICQKGCMFRG 333
            QV++ PHYR   FL+ A  RYK FL L + +      P YDIDL+WH HQ+HP++Y  +T  I  ++L HDD +NDR+EG+ L    + T+R W A YG SI Q GCMFRG
Sbjct:  169 QVSL-PHYRSWTFLEKAVQRYKMFLYLKQQNPDAFLVPCYDIDLVWHAHQVHPNIYQIDTVNILRKMLNHDDTVNDRSEGSKLDRANKLTRRLWQALYGVSIAQPGCMFRG 278
[Close]
BLAST of mRNA_H-elongata_contig82576.15907.1 vs. uniprot
Match: A0A1S3JD11_LINUN (uncharacterized protein LOC106172211 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JD11_LINUN)

HSP 1 Score: 108 bits (270), Expect = 3.210e-25
Identity = 54/111 (48.65%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:    1 QVAITPHYRHDGFLKNAFARYKKFLGLFKSSESGRYSPAYDIDLMWHIHQLHPHLYARETTKIRGELLPHDDALNDRTEGAALS*CWEATQRRWTANYGGSICQKGCMFRG 333
            QVA+ PHYR    LK A  RYK +L L + +      P YDIDL+WH HQ+HPHLY  +T+ I  ++L HDD++NDR+EG+ L+   E T+R W   +  S  Q GCMFRG
Sbjct:  179 QVAL-PHYRSQALLKKAVQRYKMYLYLKQQNPDVFLVPCYDIDLIWHAHQVHPHLYQADTSAILTKVLNHDDSVNDRSEGSRLNRADELTRRLWQDLFDESFSQPGCMFRG 288
[Close]
BLAST of mRNA_H-elongata_contig82576.15907.1 vs. uniprot
Match: A0A2R2MRP0_LINUN (uncharacterized protein LOC106165579 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A2R2MRP0_LINUN)

HSP 1 Score: 108 bits (269), Expect = 4.390e-25
Identity = 55/111 (49.55%), Postives = 72/111 (64.86%), Query Frame = 1 
Query:    1 QVAITPHYRHDGFLKNAFARYKKFLGLFKSSESGRYSPAYDIDLMWHIHQLHPHLYARETTKIRGELLPHDDALNDRTEGAALS*CWEATQRRWTANYGGSICQKGCMFRG 333
            QV++ PHYR   FL+ A  RYK FL L + +      P YDIDL+WH HQ+HP++Y  +T  I  ++L HDD +NDR+EG+ L    + T+R W A YG SI Q GCMFRG
Sbjct:  193 QVSL-PHYRSWTFLEKAVQRYKMFLYLKQQNPYVFLVPCYDIDLVWHAHQVHPNIYQIDTVNILRKMLNHDDTVNDRSEGSKLDRANKLTRRLWQALYGVSIAQPGCMFRG 302
[Close]
BLAST of mRNA_H-elongata_contig82576.15907.1 vs. uniprot
Match: A0A813AIV2_9DINO (GRDP1 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813AIV2_9DINO)

HSP 1 Score: 107 bits (267), Expect = 4.590e-25
Identity = 53/113 (46.90%), Postives = 71/113 (62.83%), Query Frame = 1 
Query:    1 QVAITPHYRHDGFLKNAFARY-KKFLGLFKSSESGRYSPAYDIDLMWHIHQLHPHLYARETTKIRGELLPHDDALNDRTEGAALS*CWEATQRRWTANYG-GSICQKGCMFRG 333
            QVA+ PHYR   FL+ A  RY  +FL L +      + P YDID +WH HQLHPH Y  ETT++ G +LPHDD++NDR+EG+ L+  WE T+  W   +   S   +G M+RG
Sbjct:  183 QVAVMPHYRDQYFLELAVERYLDRFLELKRRRPKDFWVPTYDIDCVWHAHQLHPHNYEEETTRLCGAMLPHDDSVNDRSEGSRLNNRWEETKAAWNQEFPKDSAMTRGGMYRG 295
[Close]
BLAST of mRNA_H-elongata_contig82576.15907.1 vs. uniprot
Match: A0A7S2QNJ4_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QNJ4_9DINO)

HSP 1 Score: 102 bits (254), Expect = 8.570e-25
Identity = 47/99 (47.47%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:    1 QVAITPHYRHDGFLKNAFARYKKFLGLFKSSESGRYSPAYDIDLMWHIHQLHPHLYARETTKIRGELLPHDDALNDRTEGAALS*CWEATQRRWTANYG 297
            QV  +P Y    F++ A  RY KFL L K   SG + P YDID+MWH HQL    Y ++T    G +LPHDD++NDR+EG+ LS  W+ATQ +W   +G
Sbjct:  114 QVCYSPQYYDKKFIRAACRRYSKFLTLKKRHPSGFWVPTYDIDIMWHTHQLRHSAYVKDTQGYLGSILPHDDSVNDRSEGSKLSDSWKATQSKWKEEFG 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82576.15907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813LGN2_POLGL1.630e-2849.11Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A813LAB2_POLGL1.890e-2849.11Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
R1DD40_EMIHU1.210e-2751.89Vint domain-containing protein n=1 Tax=Emiliania h... [more]
A0A813DUE5_POLGL3.700e-2745.54Hypothetical protein n=3 Tax=Polarella glacialis T... [more]
A0A813IVB3_POLGL4.650e-2645.54Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A2R2MQ27_LINUN8.690e-2649.55uncharacterized protein LOC106156973 n=1 Tax=Lingu... [more]
A0A1S3JD11_LINUN3.210e-2548.65uncharacterized protein LOC106172211 n=1 Tax=Lingu... [more]
A0A2R2MRP0_LINUN4.390e-2549.55uncharacterized protein LOC106165579 n=1 Tax=Lingu... [more]
A0A813AIV2_9DINO4.590e-2546.90GRDP1 protein n=1 Tax=Symbiodinium necroappetens T... [more]
A0A7S2QNJ4_9DINO8.570e-2547.47Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82576contigH-elongata_contig82576:241..573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size333
Cds size123
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82576.15907.1prot_H-elongata_contig82576.15907.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82576 373..495 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931232.4226751-UTR-H-elongata_contig82576:240..3721622931232.4226751-UTR-H-elongata_contig82576:240..372Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82576 241..372 +
1691679752.4275165-UTR-H-elongata_contig82576:240..3721691679752.4275165-UTR-H-elongata_contig82576:240..372Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82576 241..372 +
1622931232.4656477-UTR-H-elongata_contig82576:495..5731622931232.4656477-UTR-H-elongata_contig82576:495..573Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82576 496..573 +
1691679752.4533634-UTR-H-elongata_contig82576:495..5731691679752.4533634-UTR-H-elongata_contig82576:495..573Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82576 496..573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931232.4425685-CDS-H-elongata_contig82576:372..4951622931232.4425685-CDS-H-elongata_contig82576:372..495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82576 373..495 +
1691679752.4372013-CDS-H-elongata_contig82576:372..4951691679752.4372013-CDS-H-elongata_contig82576:372..495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82576 373..495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82576.15907.1

>prot_H-elongata_contig82576.15907.1 ID=prot_H-elongata_contig82576.15907.1|Name=mRNA_H-elongata_contig82576.15907.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
MWHIHQLHPHLYARETTKIRGELLPHDDALNDRTEGAALS*
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mRNA from alignment at H-elongata_contig82576:241..573+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82576.15907.1 ID=mRNA_H-elongata_contig82576.15907.1|Name=mRNA_H-elongata_contig82576.15907.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at H-elongata_contig82576:241..573+ (Himanthalia elongata Himel1 dioecious)
CAGGTCGCCATAACGCCACACTATCGCCACGACGGATTCCTCAAAAACGC
GTTTGCGCGATACAAGAAGTTTTTGGGGCTTTTCAAGAGCTCTGAAAGCG
GACGATACTCCCCGGCATACGACATTGACCTTATGTGGCACATCCACCAG
CTCCACCCGCACCTGTATGCCCGGGAGACGACGAAGATTAGGGGTGAGTT
GCTTCCGCACGACGACGCGCTCAACGACCGCACCGAAGGCGCAGCGCTCT
CGTAGTGCTGGGAGGCCACTCAGAGGCGCTGGACAGCGAATTACGGAGGC
TCGATCTGCCAGAAAGGTTGTATGTTCCGCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig82576:241..573+

>mRNA_H-elongata_contig82576.15907.1 ID=mRNA_H-elongata_contig82576.15907.1|Name=mRNA_H-elongata_contig82576.15907.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig82576:241..573+ (Himanthalia elongata Himel1 dioecious)
ATGTGGCACATCCACCAGCTCCACCCGCACCTGTATGCCCGGGAGACGAC
GAAGATTAGGGGTGAGTTGCTTCCGCACGACGACGCGCTCAACGACCGCA
CCGAAGGCGCAGCGCTCTCGTAGATGTGGCACATCCACCAGCTCCACCCG
CACCTGTATGCCCGGGAGACGACGAAGATTAGGGGTGAGTTGCTTCCGCA
CGACGACGCGCTCAACGACCGCACCGAAGGCGCAGCGCTCTCGTAG
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