mRNA_H-elongata_contig82484.15902.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82484.15902.1
Unique NamemRNA_H-elongata_contig82484.15902.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig82484.15902.1 vs. uniprot
Match: D8LIH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIH0_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 2.240e-53
Identity = 81/104 (77.88%), Postives = 89/104 (85.58%), Query Frame = 1 
Query:    1 MPGKGMTCWDKRELCDLNCVFATTHEGEA-GLTSCSTGCMEEHTVCTDSDDTLEYIECAKECTYTYDASLTKCNQKVSDKTKNTYGANLDACANVSSGIMDDCM 309
            MPGKGMTCWDKRELCDLNCV+ATT E E   LT CSTGC+     CTDS +TL Y+ECAK+CT TYD SLTKCNQKVSD+TKNTYGANLDACAN++SGIMDDCM
Sbjct:   32 MPGKGMTCWDKRELCDLNCVYATTAEDEDFNLTDCSTGCVTSQASCTDSAETLAYVECAKDCTLTYDGSLTKCNQKVSDQTKNTYGANLDACANIASGIMDDCM 135
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BLAST of mRNA_H-elongata_contig82484.15902.1 vs. uniprot
Match: A0A835YM51_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM51_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.140e-20
Identity = 48/111 (43.24%), Postives = 63/111 (56.76%), Query Frame = 1 
Query:    1 MPGKGMTCWDKRELCDLNCVFATTHEGEAG--------LTSCSTGCMEEHTVCTDSDDTLEYIECAKECTYTYDASLTKCNQKVSDKTKNTYGANLDACANVSSGIMDDCM 309
            MPGKGM C DK+ELC LNC+  +    +          L SC   C ++ T C D+ D  +YI+CA  C  TYD +L  C Q  S  T  TYG + DACAN+++  MD+CM
Sbjct:   22 MPGKGMGCSDKQELCSLNCLLPSAGTMDLSGVTVTRDDLNSCLDVCDKDLTQCKDTPDNTKYIDCATVCAKTYDVALNACLQAASATTVGTYGTSQDACANLAAAPMDECM 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82484.15902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIH0_ECTSI2.240e-5377.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YM51_9STRA1.140e-2043.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82484contigH-elongata_contig82484:42..1649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_003700.1
Exons2
Model size309
Cds size309
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931231.351476-CDS-H-elongata_contig82484:41..1821622931231.351476-CDS-H-elongata_contig82484:41..182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82484 42..182 -
1691679751.9520047-CDS-H-elongata_contig82484:41..1821691679751.9520047-CDS-H-elongata_contig82484:41..182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82484 42..182 -
1622931231.3662229-CDS-H-elongata_contig82484:1481..16491622931231.3662229-CDS-H-elongata_contig82484:1481..1649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82484 1482..1649 -
1691679751.962629-CDS-H-elongata_contig82484:1481..16491691679751.962629-CDS-H-elongata_contig82484:1481..1649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82484 1482..1649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82484.15902.1prot_H-elongata_contig82484.15902.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82484 42..1649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82484.15902.1

>prot_H-elongata_contig82484.15902.1 ID=prot_H-elongata_contig82484.15902.1|Name=mRNA_H-elongata_contig82484.15902.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MPGKGMTCWDKRELCDLNCVFATTHEGEAGLTSCSTGCMEEHTVCTDSDD
TLEYIECAKECTYTYDASLTKCNQKVSDKTKNTYGANLDACANVSSGIMD
DCM
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mRNA from alignment at H-elongata_contig82484:42..1649-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82484.15902.1 ID=mRNA_H-elongata_contig82484.15902.1|Name=mRNA_H-elongata_contig82484.15902.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1608bp|location=Sequence derived from alignment at H-elongata_contig82484:42..1649- (Himanthalia elongata Himel1 dioecious)
ATGCCCGGTAAGGGAATGACCTGCTGGGACAAGCGCGAGCTCTGCGACTT
GAACTGCGTGTTCGCGACCACCCACGAGGGCGAGGCCGGGCTGACGTCGT
GCAGCACCGGCTGCATGGAGGAGCACACGGTCTGCACGGACAGCGACGAT
ACCTTGGAGTATATTGAGGTACGCACAGACACACACAAGACACAGACGCT
GGGAGGATCACATTGCGAGAGTAGCCTAAAAGAGCTAAATAGCATGACAG
AAGAACCGGATTGCGCGGTTATGTGAAATTTAATATATAAAGGCACAACA
CAAACACACACACACACACACACGAGAGACGCAAATCAAGAAGTTTAGCA
TTCGATGTCATGTCATGTCATGTGTCGCGCCGCATCTTGTCCAAAATATG
TTGGCTGTCGATGGAAAAAGAGAGAGGCGACGGGATAGGGCGGACAGGGT
AAACTGCTTCCATTACAAAATGCTAACTGTGTTCCCTCGAGGGTTTTGTT
TCGCGTTGTGTCTTCTTCCCCCCGTATCATGTCCCCTTTCCCCGTGTGGT
GCTGGCCTCTCGAGAACGCCTTTTTCATCTTTTGCTGGAGGGTTTATTAT
ATTAAAGAATTAGCACCCGTGGTAGACTCGTCGTTACTAAAATCGTGGTT
TTTAAGAAGGGGGGCCGGGAGAAAGGAAACAGGCCAGAGGTTGCTTCGTG
TTTTGAGGGTTTCCGCGAGGAATACTGGCGTTTTCTGCTTGTCGTCCCGC
TCTGTATCGTGGCACCGCCTTGGGCAATCGCCACGTCGCCTCCCTTGTTC
CATGATAACGATCCCCGGCCTCATGATTTGTGTGTGCCCTGCTGGTGGCT
AAATACCTGTATCACGTGTATCCACGGCCCTTCAAACGTACCACTTGGGA
CAAACGTGCCACTTGGGAGAGAGCGATTCTGATGTTCCATCACGACAATT
TACGACGCCCACCCTCTTTGTCCCCTGTCCCCTGGGGGGGAGGGGGGTTA
CCTATCCTTCGTTCCTTCCCTTTTCGCCCTCTGTCCCTTGTTTTTAAACC
ATTTCGCCTTTTTACGATCTTTGATGTCCCCTATCCGCTCTGATTTTTTT
ACCGATTTCGCAATTTTTTATTGTCTAGTGTTTCCACTCCCTTCTTCCCG
TCTTCGGTTCCCTGTTTTTACCGATTTCGCCTTTTTACGCTCTCTGGTCT
GTCCGCCCATACTTCATGTCCCCTATCCCCTGATTTTGTACCGATTTCGC
CTTTTTTAGATTATCTAGTGTTTCCGCTAATCCTTTCTTCCCGTCCCCTC
TCCCCTTATTTTCAAACCAATTTCGTTTTTTTAGTCTGTTACTTCCCGTC
CCCTGTACTCTGTCGCATTTTTTTTAATTAACTTCGCATTTTTTTCGTTC
CTTCTTTCCCGTCGCCTGTACCCTGTCGCATTTTTGGCCGATTTTCGTCA
AACATGGCGTCTTGTAGTGCGCCAAGGAATGTACCTACACGTACGACGCC
TCTCTGACAAAGTGCAACCAAAAAGTTTCCGACAAGACGAAGAACACCTA
CGGGGCCAACCTCGACGCCTGCGCTAACGTGTCCTCCGGAATCATGGATG
ACTGCATG
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Coding sequence (CDS) from alignment at H-elongata_contig82484:42..1649-

>mRNA_H-elongata_contig82484.15902.1 ID=mRNA_H-elongata_contig82484.15902.1|Name=mRNA_H-elongata_contig82484.15902.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig82484:42..1649- (Himanthalia elongata Himel1 dioecious)
ATGCCCGGTAAGGGAATGACCTGCTGGGACAAGCGCGAGCTCTGCGACTT
GAACTGCGTGTTCGCGACCACCCACGAGGGCGAGGCCGGGCTGACGTCGT
GCAGCACCGGCTGCATGGAGGAGCACACGGTCTGCACGGACAGCGACGAT
ACCTTGGAGTATATTGAGATGCCCGGTAAGGGAATGACCTGCTGGGACAA
GCGCGAGCTCTGCGACTTGAACTGCGTGTTCGCGACCACCCACGAGGGCG
AGGCCGGGCTGACGTCGTGCAGCACCGGCTGCATGGAGGAGCACACGGTC
TGCACGGACAGCGACGATACCTTGGAGTATATTGAGTGCGCCAAGGAATG
TACCTACACGTACGACGCCTCTCTGACAAAGTGCAACCAAAAAGTTTCCG
ACAAGACGAAGAACACCTACGGGGCCAACCTCGACGCCTGCGCTAACGTG
TCCTCCGGAATCATGGATGACTGCATGTGCGCCAAGGAATGTACCTACAC
GTACGACGCCTCTCTGACAAAGTGCAACCAAAAAGTTTCCGACAAGACGA
AGAACACCTACGGGGCCAACCTCGACGCCTGCGCTAACGTGTCCTCCGGA
ATCATGGATGACTGCATG
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