mRNA_H-elongata_contig82442.15900.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82442.15900.1
Unique NamemRNA_H-elongata_contig82442.15900.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig82442.15900.1 vs. uniprot
Match: A0A6H5KQQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ7_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 6.740e-62
Identity = 99/137 (72.26%), Postives = 117/137 (85.40%), Query Frame = 1
Query:    1 MASGVQSRYVRARIFCTRNFLPLGFVVALVWALVWPFLGDAFSKPKVEGYRVIPTINVLIIFVISGLTLKTDDIKKAMGKEGRGGYIYGVVSILGITGCVGFLAAEIPFDVEEFSYGLAVFCVVPTTLSSGITLVMN 411
            M + V+SR  R + FC +N LPLGF VALV AL WP  G A +KPKV+ YR++ TINV++IF+ISGLTLKTDDIK+A+ KEGR GYIYGVV+ILGITG VGF+AAEIPFDV+EFSYGL+VFCVVPTTLSSG+TLVMN
Sbjct:    1 MTTLVESRGQRVQKFCIKNVLPLGFFVALVIALAWPAPGKAVAKPKVDDYRIVQTINVIVIFIISGLTLKTDDIKEALSKEGRWGYIYGVVAILGITGAVGFVAAEIPFDVDEFSYGLSVFCVVPTTLSSGVTLVMN 137          
BLAST of mRNA_H-elongata_contig82442.15900.1 vs. uniprot
Match: D7FQA3_ECTSI (Cysteine proteinase Cathepsin F (ISS) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA3_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 5.410e-61
Identity = 100/144 (69.44%), Postives = 118/144 (81.94%), Query Frame = 1
Query:    1 MASGVQSRYVRARIFCTRNFLPLGFVVALVWALVWPFLGDAFSKPKVEGYRVIPTINVLIIFVISGLTLKTDDIKKAMGKEGRGGYIYGVVSILGITGCVGFLAAEIPFDVEEFSYGLAVFCVVPTTLSSGITLVMNVRATDAI 432
            M + V+SR  R + FC +N LPLGF V LV AL WP  G A +KPKV  YR++ TINV++IF+ISGLTLKTDDIK+A+ KEGR GYIYGVV+ILGITG VGF+AAEIPFDV+EFSYGL+VFCVVPTTLSSG+TLVMN    DA+
Sbjct:    1 MTTLVESRGQRVQKFCIKNVLPLGFFVVLVIALAWPAPGKAVAKPKVGDYRLVQTINVIVIFIISGLTLKTDDIKEALSKEGRWGYIYGVVAILGITGAVGFVAAEIPFDVDEFSYGLSVFCVVPTTLSSGVTLVMNAGGNDAL 144          
BLAST of mRNA_H-elongata_contig82442.15900.1 vs. uniprot
Match: A4RT86_OSTLU (BASS family transporter: sodium ion/bile acid (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RT86_OSTLU)

HSP 1 Score: 122 bits (307), Expect = 3.700e-31
Identity = 66/130 (50.77%), Postives = 88/130 (67.69%), Query Frame = 1
Query:   43 FCTRNFLPLGFVVALVWALVWPFLGDAFSKPKVEGYRVIPTINVLIIFVISGLTLKTDDIKKAMGKEGRGGYIYGVVSILGITGCVGFLAAEIPFDVEEFSYGLAVFCVVPTTLSSGITLVMNVRATDAI 432
            F   NFL  GF +AL++ L  P  G A +K  V G+ VI T+ V+IIFVISG TLKT++I +A+ K GRG   YG V+ILG+T  +GF+   +P+   EF YGLA+FC VPTTL+SG+TLV N +   A+
Sbjct:    1 FLLDNFLVCGFCLALLFGLSVPAAGKALAKVSVSGWSVIQTVCVVIIFVISGATLKTEEITQAL-KAGRGALGYGWVAILGLTPLLGFILVRVPYKPIEFRYGLALFCCVPTTLTSGVTLVRNAKGNVAL 129          
BLAST of mRNA_H-elongata_contig82442.15900.1 vs. uniprot
Match: A0A7S2QY47_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S2QY47_9CHLO)

HSP 1 Score: 120 bits (300), Expect = 8.260e-31
Identity = 64/134 (47.76%), Postives = 88/134 (65.67%), Query Frame = 1
Query:   31 RARIFCTRNFLPLGFVVALVWALVWPFLGDAFSKPKVEGYRVIPTINVLIIFVISGLTLKTDDIKKAMGKEGRGGYIYGVVSILGITGCVGFLAAEIPFDVEEFSYGLAVFCVVPTTLSSGITLVMNVRATDAI 432
            RA+ F   NFL LGF +AL   L  P  G   +     G+ ++ TI V+IIF+ISG TLKT++I +A+ + GRG   YG+VSILG+T  +GF+   IP+   +F YGLA+FC VPTTL+SG+TLV N +   A+
Sbjct:   29 RAKKFVVDNFLVLGFCLALTIGLSAPAAGTTIAGWSSGGWSIVQTIAVIIIFIISGATLKTEEIAQAL-QSGRGALAYGLVSILGVTPLLGFIHINIPYTPVQFRYGLALFCAVPTTLTSGVTLVRNAKGNVAL 161          
BLAST of mRNA_H-elongata_contig82442.15900.1 vs. uniprot
Match: A0A7S0Z714_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0Z714_9CHLO)

HSP 1 Score: 120 bits (300), Expect = 9.010e-30
Identity = 64/134 (47.76%), Postives = 88/134 (65.67%), Query Frame = 1
Query:   31 RARIFCTRNFLPLGFVVALVWALVWPFLGDAFSKPKVEGYRVIPTINVLIIFVISGLTLKTDDIKKAMGKEGRGGYIYGVVSILGITGCVGFLAAEIPFDVEEFSYGLAVFCVVPTTLSSGITLVMNVRATDAI 432
            RA+ F   NFL LGF +AL   L  P  G   +     G+ ++ TI V+IIF+ISG TLKT++I +A+ + GRG   YG+VSILG+T  +GF+   IP+   +F YGLA+FC VPTTL+SG+TLV N +   A+
Sbjct:   24 RAKKFVVDNFLVLGFCLALTIGLSAPAAGTTIAGWSSGGWSIVQTIAVIIIFIISGATLKTEEIAQAL-QSGRGALAYGLVSILGVTPLLGFIHINIPYTPVQFRYGLALFCAVPTTLTSGVTLVRNAKGNVAL 156          
BLAST of mRNA_H-elongata_contig82442.15900.1 vs. uniprot
Match: A0A1Y1IAA6_KLENI (Sodium Bile acid symporter family n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IAA6_KLENI)

HSP 1 Score: 118 bits (296), Expect = 5.200e-29
Identity = 61/132 (46.21%), Postives = 87/132 (65.91%), Query Frame = 1
Query:   37 RIFCTRNFLPLGFVVALVWALVWPFLGDAFSKPKVEGYRVIPTINVLIIFVISGLTLKTDDIKKAMGKEGRGGYIYGVVSILGITGCVGFLAAEIPFDVEEFSYGLAVFCVVPTTLSSGITLVMNVRATDAI 432
            R F   NFLPLGF+ AL +AL WP  G   +  K+   RVI  +N +++F+ISGLTLK++D+K+A+  +   G +YG+V+IL +T CVGF+  +IPF   EF+ GL +FC VPTTL  G+ LV   +   A+
Sbjct:   72 RRFVIANFLPLGFLFALAFALSWPQPGREVASWKIGSIRVIQALNNILVFLISGLTLKSNDLKEAL--KNWVGVLYGIVTILLVTPCVGFVTQQIPFRPREFTEGLTIFCAVPTTLGVGVALVAASKGNQAL 201          
BLAST of mRNA_H-elongata_contig82442.15900.1 vs. uniprot
Match: A0A1Y5HY24_OSTTA (Cysteine proteinase cathepsin F n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5HY24_OSTTA)

HSP 1 Score: 120 bits (300), Expect = 1.020e-28
Identity = 63/134 (47.01%), Postives = 87/134 (64.93%), Query Frame = 1
Query:   31 RARIFCTRNFLPLGFVVALVWALVWPFLGDAFSKPKVEGYRVIPTINVLIIFVISGLTLKTDDIKKAMGKEGRGGYIYGVVSILGITGCVGFLAAEIPFDVEEFSYGLAVFCVVPTTLSSGITLVMNVRATDAI 432
            R + F   NFL  GF +AL++ L  P  G   +  +V  + V  TI V++IF+ISG TLKT++I  A+   GR  Y+YG VSILG+T  +GFLA  +P+   E+ YGLA+FC VPTTL+SG+TLV N +   A+
Sbjct:  575 RVKKFVIDNFLVCGFSLALLFGLTVPAAGKELASWEVSSWSVTQTICVVVIFIISGATLKTEEISSALA-SGRRAYVYGAVSILGLTPVLGFLAVWLPYKPREYRYGLALFCCVPTTLTSGVTLVRNAKGNVAL 707          
BLAST of mRNA_H-elongata_contig82442.15900.1 vs. uniprot
Match: A0A2V0P260_9CHLO (Sodium Bile acid symporter family n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P260_9CHLO)

HSP 1 Score: 116 bits (290), Expect = 3.980e-28
Identity = 62/146 (42.47%), Postives = 91/146 (62.33%), Query Frame = 1
Query:    4 ASGVQSRYVRA----RIFCTRNFLPLGFVVALVWALVWPFLGDAFSKPKVEGYRVIPTINVLIIFVISGLTLKTDDIKKAMGKEGRGGYIYGVVSILGITGCVGFLAAEIPFDVEEFSYGLAVFCVVPTTLSSGITLVMNVRATDA 429
            A G  + ++RA    R F  RN+L + F+VA   AL  P  G A  KPKV+G  V+  IN+ ++F +SGLTL+TD++K A  +    G ++G VSI+GIT  + F    +PF+  E++ GLA+FC+VPTTL  GI+LV + +   A
Sbjct:    7 AEGKPNEWLRALQGMRDFVIRNYLVVAFMVAFTVALSAPVPGQAALKPKVQGVHVVTFINICLVFFVSGLTLRTDELKTAFTRRNALGTVFGFVSIVGITPLLAFAVRGLPFEPAEYTTGLALFCIVPTTLGVGISLVTSAKGNVA 152          
BLAST of mRNA_H-elongata_contig82442.15900.1 vs. uniprot
Match: A0A835TEC9_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TEC9_CHLIN)

HSP 1 Score: 117 bits (292), Expect = 8.900e-28
Identity = 59/139 (42.45%), Postives = 86/139 (61.87%), Query Frame = 1
Query:   19 SRYVRARIFCTRNFLPLGFVVALVWALVWPFLGDAFSKPKVEG-YRVIPTINVLIIFVISGLTLKTDDIKKAMGKEGRGGYIYGVVSILGITGCVGFLAAEIPFDVEEFSYGLAVFCVVPTTLSSGITLVMNVRATDAI 432
            SR+ + R+F  +NFLPL F+VAL WAL WP  G   ++  V G  +++  + + I+F+I+GL L T  +K+A+        +YG ++IL IT C+GFL  E+P D  EFS GL +FCV PTTL  G+ L +     DA+
Sbjct:   13 SRWEKVRLFLIKNFLPLAFLVALTWALAWPVPGRYLAQITVLGNVKIMQVVPMAIVFLITGLQLDTAAMKRALALRNTPSILYGFLAILLITPCLGFLFLEVPLDPYEFSIGLTIFCVAPTTLGVGVALTVACGGNDAV 151          
BLAST of mRNA_H-elongata_contig82442.15900.1 vs. uniprot
Match: A0A836CLX8_9STRA (Cysteine proteinase cathepsin F n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX8_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.130e-27
Identity = 58/123 (47.15%), Postives = 78/123 (63.41%), Query Frame = 1
Query:   67 LGFVVALVWALVWPFLGDAFSKPKVEGYR-VIPTINVLIIFVISGLTLKTDDIKKAMGKEGRGGYIYGVVSILGITGCVGFLAAEIPFDVEEFSYGLAVFCVVPTTLSSGITLVMNVRATDAI 432
            +G   A++  L WP+LG     P    Y     T  V+ IF+ISGLTLKTDDI+ A+ K+GR G IYG+++ILGIT  +GFL   +P    EF+YGL VFC VPTTL+SG+++V       A+
Sbjct:    1 MGLATAVIIGLSWPWLGQKVGAPDAGEYGGAASTACVIGIFIISGLTLKTDDIRMAISKQGRAGTIYGIIAILGITPILGFLTIRLPLAQPEFAYGLTVFCAVPTTLASGVSMVTQAGGNGAL 123          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82442.15900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQQ7_9PHAE6.740e-6272.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQA3_ECTSI5.410e-6169.44Cysteine proteinase Cathepsin F (ISS) n=2 Tax=Ecto... [more]
A4RT86_OSTLU3.700e-3150.77BASS family transporter: sodium ion/bile acid (Fra... [more]
A0A7S2QY47_9CHLO8.260e-3147.76Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
A0A7S0Z714_9CHLO9.010e-3047.76Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
A0A1Y1IAA6_KLENI5.200e-2946.21Sodium Bile acid symporter family n=1 Tax=Klebsorm... [more]
A0A1Y5HY24_OSTTA1.020e-2847.01Cysteine proteinase cathepsin F n=2 Tax=Ostreococc... [more]
A0A2V0P260_9CHLO3.980e-2842.47Sodium Bile acid symporter family n=1 Tax=Raphidoc... [more]
A0A835TEC9_CHLIN8.900e-2842.45Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A836CLX8_9STRA1.130e-2747.15Cysteine proteinase cathepsin F n=1 Tax=Tribonema ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82442contigH-elongata_contig82442:2080..2511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score202.2
Seed ortholog evalue1.6e-49
Seed eggNOG ortholog2880.D7FQA3
KEGG koko:K14347
KEGG TC2.A.93.1
EggNOG free text desc.symporter activity
EggNOG OGsCOG0385@1,KOG4821@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko04147
Hectar predicted targeting categorysignal peptide
Exons1
Model size432
Cds size432
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931231.1719906-CDS-H-elongata_contig82442:2079..25111622931231.1719906-CDS-H-elongata_contig82442:2079..2511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82442 2080..2511 +
1691679751.892818-CDS-H-elongata_contig82442:2079..25111691679751.892818-CDS-H-elongata_contig82442:2079..2511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82442 2080..2511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82442.15900.1prot_H-elongata_contig82442.15900.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82442 2080..2511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82442.15900.1

>prot_H-elongata_contig82442.15900.1 ID=prot_H-elongata_contig82442.15900.1|Name=mRNA_H-elongata_contig82442.15900.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
MASGVQSRYVRARIFCTRNFLPLGFVVALVWALVWPFLGDAFSKPKVEGY
RVIPTINVLIIFVISGLTLKTDDIKKAMGKEGRGGYIYGVVSILGITGCV
GFLAAEIPFDVEEFSYGLAVFCVVPTTLSSGITLVMNVRATDAI
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mRNA from alignment at H-elongata_contig82442:2080..2511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82442.15900.1 ID=mRNA_H-elongata_contig82442.15900.1|Name=mRNA_H-elongata_contig82442.15900.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at H-elongata_contig82442:2080..2511+ (Himanthalia elongata Himel1 dioecious)
ATGGCTTCGGGGGTCCAATCGAGATACGTGCGAGCGCGAATATTCTGCAC TAGGAATTTTTTGCCCTTGGGCTTCGTGGTTGCGCTGGTGTGGGCCCTGG TCTGGCCGTTTCTGGGCGATGCCTTTTCGAAGCCCAAGGTCGAGGGATAC CGCGTCATTCCGACCATCAACGTCCTAATTATCTTCGTTATCTCGGGGCT TACCCTGAAGACAGACGACATCAAGAAGGCCATGGGCAAGGAGGGAAGAG GGGGATACATCTACGGAGTTGTATCCATCTTGGGAATCACGGGTTGCGTG GGGTTCCTTGCGGCAGAAATCCCATTCGACGTCGAGGAATTTTCGTACGG CTTGGCGGTGTTCTGCGTCGTGCCCACCACCCTGTCATCAGGCATCACCC TGGTCATGAATGTGAGAGCGACCGATGCAATC
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Coding sequence (CDS) from alignment at H-elongata_contig82442:2080..2511+

>mRNA_H-elongata_contig82442.15900.1 ID=mRNA_H-elongata_contig82442.15900.1|Name=mRNA_H-elongata_contig82442.15900.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig82442:2080..2511+ (Himanthalia elongata Himel1 dioecious)
ATGGCTTCGGGGGTCCAATCGAGATACGTGCGAGCGCGAATATTCTGCAC
TAGGAATTTTTTGCCCTTGGGCTTCGTGGTTGCGCTGGTGTGGGCCCTGG
TCTGGCCGTTTCTGGGCGATGCCTTTTCGAAGCCCAAGGTCGAGGGATAC
CGCGTCATTCCGACCATCAACGTCCTAATTATCTTCGTTATCTCGGGGCT
TACCCTGAAGACAGACGACATCAAGAAGGCCATGGGCAAGGAGGGAAGAG
GGGGATACATCTACGGAGTTGTATCCATCTTGGGAATCACGGGTTGCGTG
GGGTTCCTTGCGGCAGAAATCCCATTCGACGTCGAGGAATTTTCGTACGG
CTTGGCGGTGTTCTGCGTCGTGCCCACCACCCTGTCATCAGGCATCACCC
TGGTCATGAATGTGAGAGCGACCGATGCAATCATGGCTTCGGGGGTCCAA
TCGAGATACGTGCGAGCGCGAATATTCTGCACTAGGAATTTTTTGCCCTT
GGGCTTCGTGGTTGCGCTGGTGTGGGCCCTGGTCTGGCCGTTTCTGGGCG
ATGCCTTTTCGAAGCCCAAGGTCGAGGGATACCGCGTCATTCCGACCATC
AACGTCCTAATTATCTTCGTTATCTCGGGGCTTACCCTGAAGACAGACGA
CATCAAGAAGGCCATGGGCAAGGAGGGAAGAGGGGGATACATCTACGGAG
TTGTATCCATCTTGGGAATCACGGGTTGCGTGGGGTTCCTTGCGGCAGAA
ATCCCATTCGACGTCGAGGAATTTTCGTACGGCTTGGCGGTGTTCTGCGT
CGTGCCCACCACCCTGTCATCAGGCATCACCCTGGTCATGAATGTGAGAG
CGACCGATGCAATC
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