mRNA_H-elongata_contig82341.15890.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82341.15890.1
Unique NamemRNA_H-elongata_contig82341.15890.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig82341.15890.1 vs. uniprot
Match: D7FGQ9_ECTSI (Dolichyldiphosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGQ9_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 3.820e-7
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:   34 RIRLNCHTLNQVAVGAAVGCGTGALWYFLYAKVI 135
            R+ L CHTL QVAVGAAVG  TG LWY LY+KV+
Sbjct:  140 RMCLQCHTLKQVAVGAAVGTTTGGLWYLLYSKVL 173
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BLAST of mRNA_H-elongata_contig82341.15890.1 vs. uniprot
Match: A0A485KZJ7_9STRA (Dolichyldiphosphatase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KZJ7_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 2.180e-5
Identity = 24/42 (57.14%), Postives = 27/42 (64.29%), Query Frame = 1 
Query:   16 CYASIDRIRLNCHTLNQVAVGAAVGCGTGALWY-FLYAKVIP 138
            C   + RIRL  HT+ QV VGAAVG GTG LWY F+    IP
Sbjct:  276 CLVFVSRIRLGYHTVAQVVVGAAVGAGTGILWYIFMENMAIP 317
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82341.15890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FGQ9_ECTSI3.820e-770.59Dolichyldiphosphatase n=1 Tax=Ectocarpus siliculos... [more]
A0A485KZJ7_9STRA2.180e-557.14Dolichyldiphosphatase n=1 Tax=Aphanomyces stellatu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82341contigH-elongata_contig82341:2403..2540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptiondolichyldiphosphatase
Ec32 orthologEc-04_001210.1
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931230.0374768-CDS-H-elongata_contig82341:2402..25401622931230.0374768-CDS-H-elongata_contig82341:2402..2540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82341 2403..2540 -
1691679751.3322237-CDS-H-elongata_contig82341:2402..25401691679751.3322237-CDS-H-elongata_contig82341:2402..2540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82341 2403..2540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82341.15890.1prot_H-elongata_contig82341.15890.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82341 2403..2540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82341.15890.1

>prot_H-elongata_contig82341.15890.1 ID=prot_H-elongata_contig82341.15890.1|Name=mRNA_H-elongata_contig82341.15890.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
SSTSTCYASIDRIRLNCHTLNQVAVGAAVGCGTGALWYFLYAKVIP
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mRNA from alignment at H-elongata_contig82341:2403..2540-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82341.15890.1 ID=mRNA_H-elongata_contig82341.15890.1|Name=mRNA_H-elongata_contig82341.15890.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig82341:2403..2540- (Himanthalia elongata Himel1 dioecious)
AGTTCTACCTCCACATGTTACGCTTCAATCGACAGGATACGCCTGAATTG
CCACACACTCAACCAGGTAGCCGTTGGGGCTGCTGTCGGGTGCGGTACGG
GTGCATTGTGGTACTTCCTCTACGCCAAGGTAATACCA
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Coding sequence (CDS) from alignment at H-elongata_contig82341:2403..2540-

>mRNA_H-elongata_contig82341.15890.1 ID=mRNA_H-elongata_contig82341.15890.1|Name=mRNA_H-elongata_contig82341.15890.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig82341:2403..2540- (Himanthalia elongata Himel1 dioecious)
AGTTCTACCTCCACATGTTACGCTTCAATCGACAGGATACGCCTGAATTG
CCACACACTCAACCAGGTAGCCGTTGGGGCTGCTGTCGGGTGCGGTACGG
GTGCATTGTGGTACTTCCTCTACGCCAAGGTAATACCAAGTTCTACCTCC
ACATGTTACGCTTCAATCGACAGGATACGCCTGAATTGCCACACACTCAA
CCAGGTAGCCGTTGGGGCTGCTGTCGGGTGCGGTACGGGTGCATTGTGGT
ACTTCCTCTACGCCAAGGTAATACCA
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