prot_H-elongata_contig82310.15887.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig82310.15887.1
Unique Name	prot_H-elongata_contig82310.15887.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	166

Homology

[Close]

BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 189 bits (479), Expect = 2.030e-52
Identity = 85/153 (55.56%), Postives = 112/153 (73.20%), Query Frame = 0

Query:   14 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLGPLCY 166
            LP  FW LHTS NLSA+G   RP+A G + RR++G V CR+Y   LA++F+P GQYGVAV GG +++A  A L  + G  +L+YD +NAFNS+ R   LPAL +++P M+PYA+N+YAREPPKL++  D G + V+ SA GVQQ CNLGPLCY
Sbjct: 1211 LPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDSG-MAVIPSATGVQQGCNLGPLCY 1362

[Close]

BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 1.360e-46
Identity = 80/149 (53.69%), Postives = 101/149 (67.79%), Query Frame = 0

Query:   14 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLG 162
            LP  FW LHTS NLSALG   RP+A GGVLRR+I   FCR+Y   +A+ F+   Q+G  V GGV+I+A TA L  + G TILS+DG+NA+NS+ R   LPA+    P +V Y  N+YAR   KL+F ++ G +EVV S RGVQQ CNLG
Sbjct:  175 LPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLG 323

[Close]

BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 3.850e-45
Identity = 79/149 (53.02%), Postives = 100/149 (67.11%), Query Frame = 0

Query:   14 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLG 162
            LP  FW LHTS NLSALG   RP+A GGVLRR+I   FCR+Y   +A+ F+   Q+G  V GGV+I+A TA L  + G TILS+DG+NA+NS+ R   LPA+    P +  Y  N+YAR   KL+F ++ G +EVV S RGVQQ CNLG
Sbjct:   23 LPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLG 171

[Close]

BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 2.440e-44
Identity = 80/149 (53.69%), Postives = 101/149 (67.79%), Query Frame = 0

Query:   14 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLG 162
            LP  FW LHTS NLSALG   RP+A GGVLRR+I   FCR+Y   +A+ F+   Q+G  V GGV+I+A TA L  + G TILS+DG+NA+NS+ R   LPA+    P +V Y  N+YAR   KL+F ++ G +EVV S RGVQQ CNLG
Sbjct:  175 LPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLG 323

[Close]

BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 2.840e-44
Identity = 79/149 (53.02%), Postives = 100/149 (67.11%), Query Frame = 0

Query:   14 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLG 162
            LP  FW LHTS NLSALG   RP+A GGVLRR+I   FC +Y   +A+ F+   Q+G  V GGV+I+A TA L  + G TILS+DG+NA+NS+ R   LPA+    P +V Y  N+YAR   KL+F ++ G +EVV S RGVQQ CNLG
Sbjct:  175 LPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLG 323

[Close]

BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 3.110e-44
Identity = 80/149 (53.69%), Postives = 101/149 (67.79%), Query Frame = 0

Query:   14 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLG 162
            LP  FW LHTS NLSALG   RP+A GGVLRR+I   FCR+Y   +A+ F+   Q+G  V GGV+I+A TA L  + G TILS+DG+NA+NS+ R   LPA+    P +V Y  N+YAR   KL+F ++ G +EVV S RGVQQ CNLG
Sbjct:  175 LPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLG 323

[Close]

BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5L3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H3_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.190e-42
Identity = 73/144 (50.69%), Postives = 95/144 (65.97%), Query Frame = 0

Query:   14 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQ 157
            LP +FW   TS +LSALG   RP+A GGVLRR+I   FCR+Y + +AD F+   Q+G  V GGV+I+A TA L  + G TILS+DG+NA+NSI R   L A+    P +V Y  NLYAR   KL+F ++ G +E+V S R VQQ
Sbjct:   23 LPDLFWGFQTSASLSALGEKKRPIAVGGVLRRIISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAALSHQQGSTILSFDGRNAYNSILRSSILTAVATHTPHLVKYFGNLYARIKAKLLFKMEDGSIEMVRSQREVQQ 166

[Close]

BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.290e-42
Identity = 78/149 (52.35%), Postives = 100/149 (67.11%), Query Frame = 0

Query:   14 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLG 162
            LP   W LHTS NLSALG   RP+A GGVLRR+I   F R+Y   +A+ F+   Q+G  V GGV+I+A TA L  + G TILS+DG+NA+NS+ R   LPA+  + P +V Y  N+YAR   KL+F ++ G +EVV S RGVQQ CNLG
Sbjct:   23 LPDFLWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLG 171

[Close]

BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5KQE6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE6_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 4.370e-26
Identity = 55/114 (48.25%), Postives = 71/114 (62.28%), Query Frame = 0

Query:   14 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVI------------GAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPAL 115
            LP +FW LHTS +LSALG   RP+A GGVLRR+I               FCR+Y + +AD F+   Q+G  V GGV+I+A TA    + G TILS+DG+NA+NSI R   L A+
Sbjct:   23 LPDLFWGLHTSASLSALGEKKRPIAVGGVLRRIIXIXXXXXXXXXISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAAPSHQQGSTILSFDGKNAYNSILRSSILTAV 136

[Close]

BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.300e-23
Identity = 56/149 (37.58%), Postives = 79/149 (53.02%), Query Frame = 0

Query:   15 PQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLGP 163
            P  FWTL   ++L ALG   RPV  G   RR+I A   R +  KL + F+   Q+GVAV+GGV+ +A+ A L  + G  ++  D  NAFN+  R   +    + VP +V Y +  Y   P K I+ +D G    +E   GVQQ   +GP
Sbjct:   60 PPEFWTLWKRSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGP 208

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot

BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6P0N5L4_9CYAN	2.030e-52	55.56	Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta...	[more]
A0A6H5KQ62_9PHAE	1.360e-46	53.69	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5KSY9_9PHAE	3.850e-45	53.02	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5JCM0_9PHAE	2.440e-44	53.69	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5KGJ4_9PHAE	2.840e-44	53.02	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5LN63_9PHAE	3.110e-44	53.69	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5L3H3_9PHAE	1.190e-42	50.69	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K1H0_9PHAE	1.290e-42	52.35	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KQE6_9PHAE	4.370e-26	48.25	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5L4Y4_9PHAE	1.300e-23	37.58	Reverse transcriptase domain-containing protein n=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..1
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 2..10
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 16..166
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 11..15
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..15
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..15 score: 0.512

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig82310	contig	H-elongata_contig82310:2054..2551 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig82310.15887.1	mRNA_H-elongata_contig82310.15887.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig82310 2054..2551 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig82310.15887.1 ID=prot_H-elongata_contig82310.15887.1|Name=mRNA_H-elongata_contig82310.15887.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
LAAFATLVCFSRVLPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAV
FCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQ
NAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVE
SARGVQQRCNLGPLCY