mRNA_H-elongata_contig82310.15887.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN) HSP 1 Score: 189 bits (479), Expect = 2.030e-52 Identity = 85/153 (55.56%), Postives = 112/153 (73.20%), Query Frame = 1
Query: 40 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLGPLCY 498
LP FW LHTS NLSA+G RP+A G + RR++G V CR+Y LA++F+P GQYGVAV GG +++A A L + G +L+YD +NAFNS+ R LPAL +++P M+PYA+N+YAREPPKL++ D G + V+ SA GVQQ CNLGPLCY
Sbjct: 1211 LPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDSG-MAVIPSATGVQQGCNLGPLCY 1362
BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE) HSP 1 Score: 165 bits (418), Expect = 1.360e-46 Identity = 80/149 (53.69%), Postives = 101/149 (67.79%), Query Frame = 1
Query: 40 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLG 486
LP FW LHTS NLSALG RP+A GGVLRR+I FCR+Y +A+ F+ Q+G V GGV+I+A TA L + G TILS+DG+NA+NS+ R LPA+ P +V Y N+YAR KL+F ++ G +EVV S RGVQQ CNLG
Sbjct: 175 LPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLG 323
BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE) HSP 1 Score: 164 bits (414), Expect = 3.850e-45 Identity = 79/149 (53.02%), Postives = 100/149 (67.11%), Query Frame = 1
Query: 40 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLG 486
LP FW LHTS NLSALG RP+A GGVLRR+I FCR+Y +A+ F+ Q+G V GGV+I+A TA L + G TILS+DG+NA+NS+ R LPA+ P + Y N+YAR KL+F ++ G +EVV S RGVQQ CNLG
Sbjct: 23 LPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLG 171
BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE) HSP 1 Score: 165 bits (418), Expect = 2.440e-44 Identity = 80/149 (53.69%), Postives = 101/149 (67.79%), Query Frame = 1
Query: 40 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLG 486
LP FW LHTS NLSALG RP+A GGVLRR+I FCR+Y +A+ F+ Q+G V GGV+I+A TA L + G TILS+DG+NA+NS+ R LPA+ P +V Y N+YAR KL+F ++ G +EVV S RGVQQ CNLG
Sbjct: 175 LPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLG 323
BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE) HSP 1 Score: 163 bits (413), Expect = 2.840e-44 Identity = 79/149 (53.02%), Postives = 100/149 (67.11%), Query Frame = 1
Query: 40 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLG 486
LP FW LHTS NLSALG RP+A GGVLRR+I FC +Y +A+ F+ Q+G V GGV+I+A TA L + G TILS+DG+NA+NS+ R LPA+ P +V Y N+YAR KL+F ++ G +EVV S RGVQQ CNLG
Sbjct: 175 LPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLG 323
BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE) HSP 1 Score: 165 bits (418), Expect = 3.110e-44 Identity = 80/149 (53.69%), Postives = 101/149 (67.79%), Query Frame = 1
Query: 40 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLG 486
LP FW LHTS NLSALG RP+A GGVLRR+I FCR+Y +A+ F+ Q+G V GGV+I+A TA L + G TILS+DG+NA+NS+ R LPA+ P +V Y N+YAR KL+F ++ G +EVV S RGVQQ CNLG
Sbjct: 175 LPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLG 323
BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5L3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H3_9PHAE) HSP 1 Score: 149 bits (375), Expect = 1.190e-42 Identity = 73/144 (50.69%), Postives = 95/144 (65.97%), Query Frame = 1
Query: 40 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQ 471
LP +FW TS +LSALG RP+A GGVLRR+I FCR+Y + +AD F+ Q+G V GGV+I+A TA L + G TILS+DG+NA+NSI R L A+ P +V Y NLYAR KL+F ++ G +E+V S R VQQ
Sbjct: 23 LPDLFWGFQTSASLSALGEKKRPIAVGGVLRRIISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAALSHQQGSTILSFDGRNAYNSILRSSILTAVATHTPHLVKYFGNLYARIKAKLLFKMEDGSIEMVRSQREVQQ 166
BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE) HSP 1 Score: 160 bits (406), Expect = 1.290e-42 Identity = 78/149 (52.35%), Postives = 100/149 (67.11%), Query Frame = 1
Query: 40 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLG 486
LP W LHTS NLSALG RP+A GGVLRR+I F R+Y +A+ F+ Q+G V GGV+I+A TA L + G TILS+DG+NA+NS+ R LPA+ + P +V Y N+YAR KL+F ++ G +EVV S RGVQQ CNLG
Sbjct: 23 LPDFLWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLG 171
BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5KQE6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE6_9PHAE) HSP 1 Score: 106 bits (264), Expect = 4.370e-26 Identity = 55/114 (48.25%), Postives = 71/114 (62.28%), Query Frame = 1
Query: 40 LPQVFWTLHTSTNLSALGRNARPVACGGVLRRVI------------GAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPAL 345
LP +FW LHTS +LSALG RP+A GGVLRR+I FCR+Y + +AD F+ Q+G V GGV+I+A TA + G TILS+DG+NA+NSI R L A+
Sbjct: 23 LPDLFWGLHTSASLSALGEKKRPIAVGGVLRRIIXIXXXXXXXXXISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAAPSHQQGSTILSFDGKNAYNSILRSSILTAV 136
BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE) HSP 1 Score: 102 bits (254), Expect = 1.300e-23 Identity = 56/149 (37.58%), Postives = 79/149 (53.02%), Query Frame = 1
Query: 43 PQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVFCRRYDRKLADYFQPWGQYGVAVSGGVDIMALTAILEFEDGCTILSYDGQNAFNSIYRLGFLPALVEIVPSMVPYASNLYAREPPKLIFALDGGGLEVVESARGVQQRCNLGP 489
P FWTL ++L ALG RPV G RR+I A R + KL + F+ Q+GVAV+GGV+ +A+ A L + G ++ D NAFN+ R + + VP +V Y + Y P K I+ +D G +E GVQQ +GP
Sbjct: 60 PPEFWTLWKRSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGP 208 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82310.15887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig82310.15887.1 >prot_H-elongata_contig82310.15887.1 ID=prot_H-elongata_contig82310.15887.1|Name=mRNA_H-elongata_contig82310.15887.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp LAAFATLVCFSRVLPQVFWTLHTSTNLSALGRNARPVACGGVLRRVIGAVback to top mRNA from alignment at H-elongata_contig82310:2054..2551+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig82310.15887.1 ID=mRNA_H-elongata_contig82310.15887.1|Name=mRNA_H-elongata_contig82310.15887.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=498bp|location=Sequence derived from alignment at H-elongata_contig82310:2054..2551+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig82310:2054..2551+ >mRNA_H-elongata_contig82310.15887.1 ID=mRNA_H-elongata_contig82310.15887.1|Name=mRNA_H-elongata_contig82310.15887.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig82310:2054..2551+ (Himanthalia elongata Himel1 dioecious)back to top |