mRNA_H-elongata_contig8224.15880.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8224.15880.1 vs. uniprot
Match: D7G6H2_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6H2_ECTSI) HSP 1 Score: 506 bits (1302), Expect = 1.170e-145 Identity = 556/1722 (32.29%), Postives = 752/1722 (43.67%), Query Frame = 1
Query: 1 PGAYVWPEGPGRVAVEWLDFRATRAQRDIFEVSTVLPLDATPQEVFLGVGTPVVQWLGEGFNAVVLSYGEACSGKTSLLLG-GDPC-HARDTSCRKSPEIALASDAEKPSGGG------------GLLRGILRDLFMNASSKAAHEAVD---------EKSPTSNFCAVED----------GGHGNT---------GIGSGATLRGSTSEVAESSGGSKTLKIDEYS----RRQGQRGC------------DRSCRETQTAV-------------VVAISAWEVRKKSVIDLLSPAEFPAPNSSGRGNDGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHS------------------------------DDSS---AGWLSGCPEGFAAVKTPDLKTAMELVDNAL-RHSAEMGRRGASMEPGKVGRGGRGAERKHGKKNSS----------GHVFFRVVVYKRAEETVSTLHLVDLAGGWEPSAEKPMSKKGNKSSPSTSTRRSAVASKDIQSFDAMIAGLVRPNFSLSSDSLRHSTAGQSDQGGGGDESSHIGNHRSDNIEGMDSRWMAPAAAVKTADPSLNRSSSFPRPAPPSHHPLFGSSI-MSAGGGDGGELIEALRPLMSGNARSWLVVSVGGK-KGGGGAAWQVLDVARQATSIATTCIRLRGVAMADLRLLDARTVL--ARGTALSPPPCALNEELGAV-------------------------GTKLGTLACTENFC-----GGERSSAVRFSEPPVERSSESPWPVMKGSRKLDGLNGLEKEDISPVDSSLGEVG----GRTSLNKFLEGFHRGSDA--NGPRTL------------------AGPLFGGITSDASKRDEGTARSTISAKNAYRISAEASQKEIAAAPGLENEIEHIATEDSTTKAQRRVVTQQPISLTHDEVN----CSSLGRAPNGFCSSSVPSIDSTCGDSKG-------------------GALKNGRIDGKETAGERGDYMMTPPLVVAAAACTKRNINRMVSELLEDVLP-------------------ASRRASAGELVGVG-GTTQETADIGDPESRRTYTISCQAGRAVAPPXXXXXXXXSPHTQAAKHLRPSGPRPRSSSESAGKQDMLFTPIEVLMHAPAGSEDYDLQRQLPQRQTVH--HPGMRYENQQSKLADSTSSGGKQNCHSRGG-RGNGENIR--GPRKTIVQSRVSVVASTVKSEKPACAGNPSHGKPVEGKFVQSGHCASDCSNINAFTQSWEGGGLVKNANSVPNGG---TKVPQARPVAKPPITAKEAATRSVRISDLWEAHG------GMCDEGREPHAEVLQQRSNAALLRVVQEQEERAKQMQCRFEAKENDWLERVTALEAELEGFRAEAVEMNGRLKRAEALSPSVDLFASYEAQMEILEAENADLRDANISLELRLLDLLREYSSSTASAAAVASSRAASATGVTAWPGE------------------IVQEKRMDTSRGDGDLPLEGDDRSAWPAAIGVRKFMANTRLTSGAGMRSE----------------------RASPAYTTALRDLRRRLKEAEREVNELRLGQAALEKRERQCQARLHIFSEHKSRVGELSRRERQHEADLTESRLECARAEAVAERNAAEIDRLREGQAALKVDKDALILELAEERKKSRCFDEDRRAYGHIRRFIEQHAGGRPAEWDLEI 4356
P V +GP V+VE + R T Q++ FEV+ VL L+ATP+E+F GVG+PVV WL +GFNAVVLSYG+A SGKTSLL+G G P S +++ + + G G GLL+ ILRD+F A++ +A D + SPT+ E H N GIG TL G T EV + G+ T+ Y R +G+R S ET + VVA+SAWEV K V DL P+P+S G + S DDSS AGW +G PEGF +V+ P+L TA+ELVD A R SA +R + G G+G HVFFRVVVY EETVSTLH+VDLAGGWEP +EKP ++G+K S S R SAV S++ SFDAM+ GLV +TA D+ D + G+ +E + A A A+ + S S P P PP+H P+FGS + GGG GG+L+EALRPL+SGN R+WLVVSVGG K GGGAAW+ LDVAR+AT I+TTCIRLRGVA+ DLRL VL G+ S P + + V G+ L + E GG+ S+ + EP E+ +P ++ L GL+ E+ S G+ G G +S++ FL GF RG + PR + A P I + +R +G + K S + K AA+ A S + +++R Q L + +++G P+ S+ + G ++G L+N K AGE G ++ A + + NI+RM+S LLE+VLP A VGV T + D +R++ + R PP S Q+A P +S+ +SA TPIEVLM PAG + + + Q H + + A+++ ++ H G +G +R G + S+ + G+ + G+ +G S S N+ ++ + GG T + + S R+ + AH GM DEG L R +AALLRVV+EQE+R KQM RFEAKE DWLERVT LEA+LEG RAEAVE GRL+RAE SPS ++F YEA ILEAEN LRD NISLELRLLD LR+ S+ AS+TG T E +V + T +G+ E + P +++ A+ + G S +P L+DLRRRLKEAE E ++R +A ++KR+R CQA+L E +S++ E RER+HE LT SRLE ARAE +AE AAE++ L + QAAL +++ L+L LAEERKKSR FDEDR AYGHIRRFIE+HAGGRPAEWD E+
Sbjct: 31 PDLCVRRDGPRHVSVEAPECRTTSRQKESFEVTRVLQLNATPEEIFAGVGSPVVDWLWDGFNAVVLSYGQARSGKTSLLVGNGAPLTETPGESSQRAQSLPKGNSEPGRIGSGRLGKGRRRGDEEGLLKDILRDIFDKAAAAGPADAADPVLVACQEKQLSPTTGEPPYETLNPLAGSWSPSRHANDSPGFDVCPGGIG---TLLG-TQEVTPNGAGTATVHTKRYGIDSERSEGRRDSTEPVATADQIYGSESRNETGKQISRRSITGESGLRAVVALSAWEVAGKHVTDLFVD---PSPDSGSTGGSSNGRKNSMGNSSSSIEVDDKGTRGVAGRSRSRNRSNRNRAAGSDCSRRGGNRGGGSRNSRGRSGSDDSSSTGAGWPTGYPEGFLSVRAPNLSTALELVDVAQSRCSACRRQRATATSEAAKGSRGKGXXXXXXXXXXXXXXXXXXXXXSHVFFRVVVYNTLEETVSTLHIVDLAGGWEPPSEKPAGRRGSKCSGMGSVRPSAV-SREWNSFDAMMVGLVPXXXXX-----XXATAVPPDRVN--DSGCNCGH-----VEKGGIAFDAGGATAVNAEAAA--SESRPAPPPPAH-PVFGSPKGKTFGGGGGGKLVEALRPLISGNTRTWLVVSVGGDGKCGGGAAWRALDVARRATGISTTCIRLRGVALTDLRLRSPSEVLPVVDGSHTSNPEDEFSASVSGVSNRRRGRTRASASTTSVDTVTALTVGSPLNETSRVEQTLLSTAGGGQNSTTFGYPEP--EQVLHAPISLVP---LLSGLSEGERSLFS-FGERTGDGGESSAGSSSVDDFLAGFVRGXXXXXDRPRLISSSGVLQADDMLENEPEQATPAGQVIAAPLGERGDGNRSDVVKGKP----SRTSKPKAFAAS----------AVRGSLSFSEQRQHDQHAPQLQGSRLRPGGRAATVGPKPSAGTPSTTSFTYNGSGSARGFENDGGEEDDNDPPATLRESRLRNEAFSRKVAAGEPG--VIDAEAESPAESRARENIDRMMSLLLEEVLPDRXXXXXXXXXXXXXXXXXXXXXXXAASPVGVSRDRTAAASATADAVARQSSSFRSSLPRGPTPPPVGRP---SDDDQSA-------PAMQSTPDSA----TFLTPIEVLMRTPAGGASIGCKSKREEEQRGHCRQCTASDDTTPTSRAETSRRAKEETLHPPGWVQGQAPKVRAVGRSGRMADEHTSMPTPKARDIVGRDTGDANIGRRSRAASSGTGDALSRLSRGNSSGXXXXXXXXXXSSRGLSTGGARQTSTSDRNTDERDGGECMKVEVGSARVENNG-AHAFEDKLDGMEDEGG-----ALLGRHHAALLRVVREQEDRGKQMIRRFEAKECDWLERVTTLEADLEGLRAEAVETRGRLRRAEESSPSAEVFERYEAHTGILEAENTSLRDQNISLELRLLDTLRQ------------STTTASSTGRTTVATETNSHLSLSGCQQHRHHAALVSTRATATGEKEGNQDSEICPKQHKPGTGALQQAEASAKACVDGGATSRFRVDGRVPPSGSVGEAGKPWPSGGTPMCAAVLKDLRRRLKEAELEAKKMRAERAGMDKRDRLCQAQLRTLKEQRSKLREFLLREREHEVKLTASRLESARAEVIAEDKAAEVEHLLDNQAALVAEREDLVLALAEERKKSRQFDEDRVAYGHIRRFIERHAGGRPAEWDEEV 1675
BLAST of mRNA_H-elongata_contig8224.15880.1 vs. uniprot
Match: A0A6H5L684_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L684_9PHAE) HSP 1 Score: 479 bits (1232), Expect = 2.760e-136 Identity = 552/1731 (31.89%), Postives = 748/1731 (43.21%), Query Frame = 1
Query: 1 PGAYVWPEGPGRVAVEWLDFRATRAQRDIFEVSTVLPLDATPQEVFLG--------------------------------------VGTPVVQWLGEGFNAVVLSYGEACSGKTSLLLG-GDPCHARDTSCRKSPEIALASDAEKPSGGG--------------GLLRGILRDLFMNASSKAAHEAVD---------EKSPTSN-----FCAVEDGG-----HGNT---------GIGSGATLRGSTSEVAESSGGSKTLKID----EYSRRQGQRGCDRSCR-------------------------ETQTAVVVAISAWEVRKKSVIDLLSPAEFPAPNSSGRGNDGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXH----------------------------SDDSS---AGWLSGCPEGFAAVKTPDLKTAMELVDNALRHSAEMGRRGASMEPGKVGRGGRGA------------ERKHGKKNSSGHVFFRVVVYKRAEETVSTLHLVDLAGGWEPSAEKPMSKKGNKSSPSTSTRRSAVASKDIQSFDAMIAGLV-RPNFSLSSDSLRHSTAGQSDQGGGGDESSHIGNHRSDNIEGMDSRWMAPAAAVKTADPSLNRSSSFPRPAPPSHHPLFGSSI-MSAGGGDGGELIEALRPLMSGNARSWLVVSVGGK-KGGGGAAWQVLDVARQATSIATTCIRLRGVAMADLRLLDARTVL--ARGTALSPPPCALNEELGA------VGTKLGTLACTENFCGGERSSAVRFSEPPVERSSESPWPVMKGSRKLDGLNGLEKEDISPVDSSLGEV-----GGRTSLNKFLE-----GFHRGSDANGPRTLAGPLFGGITSDASKR---DEGTARSTISAKNAYRISAEASQKEIAAAPGLENEIEHIATE------DSTTKAQRRVVTQQPISLTHDEVN-----------------CSSLGRAPNGFCSSSVPSIDSTCGDSKG-------------------GALKNGRIDGKETAGERGDYMMTPPLVVAAAACTKRNINRMVSELLEDVLP---------ASRRASAGELVGVGGTTQETADIGDPESRRTY-TISCQAGRAVAPPXXXXXXXXSPHTQAAKHLRPSGPRPRSSSESAGKQDMLFTPIEVLMHAPAGSEDYDLQRQLPQRQTVHHPGMRY-----ENQQSKLADSTSSGGKQNCHSRGGRGNGENIRGPRKTIVQSRVSVVASTVKSEKPACAGNPSHGKPVEGKFVQSGHCASDCSNINAFTQSWEGGG---------LVKNANSVPNGGTK-VPQARPVAKPPITAKEAATRSVRISD-----LWEAHGGMCDEGREPHAEVLQQRSNAALLRVVQEQEERAKQMQCRFEAKENDWLERVTALEAELEGFRAEAVEMNGRLKRAEALSPSVDLFASYEAQMEILEAENADLRDANISLELRLLDLLREYSSSTASAAAVASSRAASATGVTAWPGEIVQEKR-------MDTSRGD----------------GDLPLEGDDRSAWPAAIG--VRKFMANTRL-TSGAGMRSER-----ASPAYTTALRDLRRRLKEAEREVNELRLGQAALEKRERQCQARLHIFSEHKSRVGELSRRERQHEADLTESRLECARAEAVAERNAAEIDRLREGQAALKVDKDALILELAEERKKSRCFDEDRRAYGHIRRFIEQHAGGRPAEWDLE 4353
P V +GP V++E R T Q++ FEV+ VLPL+ATP+E+F G VG PVV WL +GFNAVVLSYG+A SGKTSLL+G G P + + L ++E P G G GLL+ ILRD+F A++ +A D + SPT+ C G H N GIG TL G T E+ GG+ T++ + R +G+R + E+ VVA+SAWEV K V DL P S+G NDG XXXX SDDSS AGW +G PEGF +V+ P+L TA+ELVD A + RR ++ + +G RG HVFFRVVVY EET STLH+VDLAGGWEP +EKP ++G+K S + R SAV S++ SFDAM+ GLV + ++ H+ SD + G+ I R A AVK A + S S P P PP+ HP+FGS + GGG GG+L+E LRPL+SGN R+WLVVSVGG KGGGGAAW+ LDVAR+AT I+TTCIRLRGVA+ DLRL + VL A G S P + + V T+ T A + + G + +EP R +S G + E E + SLG G SL F E G R ++ LAG + GG D R G ++ ++ +N + A Q IAAA G + E +S A V Q +S + +++G P+ S+ + G +G L++ K AGE G + A + + NI+ M+S LLE+VLP A + + + T A ++ + SP S P +++ + A TPIEVLM PAG + +++ R + + A+++ +++ H G + G + S ++ ++ P G+ G V+ A+ +A ++ G ++ + GG + P + S R L + GM DEG L R +AALLRVV+EQE+R KQM RFEAKE DWLERVT LEA+L+G RAEAVE GRL+RAE SPS ++F YEA + ILEAEN LRD NISLELRLLD+LR+ STA+A++ + + T P Q + T+ G+ G L+ D SA G +F + + SG+ + + +P L+DLRRRLKEAE E E+R +AA++KR+R CQA+L E +S++ E RER+ EA LT SRLE ARAE AE AAE++ L + QAAL +++ L+L LAEERKKSR FDEDR AYGHIRRFIE+HAGGRPAEWD E
Sbjct: 10 PDLCVQRDGPRHVSIEAPQCRTTPRQKESFEVTRVLPLNATPEEIFAGSDVRPLLLPTEVRFGVPMSLAPNPFTLTSKTNLKQKRGVGGPVVDWLWDGFNAVVLSYGQARSGKTSLLVGKGAPLTETPGESSQRAQCFLNGNSE-PVGIGSGRLGKGRRRGDKEGLLKDILRDIFDKAAAAGPADAADPVLVACQEKQLSPTTGEPPYEICNPLAGSWSPSRHANDSPGFDVCPGGIG---TLLG-TQELTPRGGGTATVQTKVSGIDSQRWEGRRDSAKPVATADRIYGSEIMNETGKQTTRPSLTGESGRIAVVALSAWEVAGKHVTDLFVDPS-PDSGSTGGSNDGRKDSMGNSSSSIEVNDKGTRGVGGRSRSXXXXXXXXAAGSGCSREGGNRGXXXXXXXXXXXSDDSSSTGAGWPTGYPEGFLSVRAPNLSTALELVDAAQSRCSAC-RRQRAIATSEAAKGSRGKGXXXXXXXXXXXXXXXXXXXXXSHVFFRVVVYNTLEETASTLHMVDLAGGWEPPSEKPTGRRGSKCSGMGTVRPSAV-SREWNSFDAMMVGLVPXXXXXXXATAVPHNRVNGSD--------CNCGHIEKGGIACDADR----ATAVKAAAAA---SGSRPAP-PPTAHPVFGSPKGKTFGGGGGGKLVETLRPLISGNTRTWLVVSVGGDGKGGGGAAWRALDVARRATGISTTCIRLRGVALTDLRLRSSSEVLPVADGCGTSNPEDDFSASINGASNRRRVRTRASTSATSVDI-GTALTVGSPLNEP--SRVEQSLLSTAGGGQNSTTFGSPEPEQVLHAPISLGPSLSGLSEGERSLFSFRERTGDGGEERAGSSSVDEFLAGFVRGGGDDDDRPRPMSSGGVVQADVTLENEPEQATPAGQL-IAAALGGRGDENRSGVEKGKPSRNSKPTAFAASVVQGSLSFGEQRQHYQHAPQLQGSRLRPGGRAATVGPKPSADTPSTTSFAYNGGGSPRGFENDGXXXXXXXXXTTLRESRLRSEAFSRKVAAGEPG--VENAEAESPAESRARENIDLMMSSLLEEVLPDRXXXXXXXXXXXXXXXXXXXXXXXAASPAGVSRDRTAAAFATADAVARQSSSSRSPLPRGPTSPSVARRSDDDHSAPAMQNTPDHA----TFLTPIEVLMRTPAGGGSIGCKSTREEKREEKQGHCRQCTASDDATPTSRAETSRRANEESLHPSGW------VHGQAPNVRAVGTSGQSADERTSIPTPLAGDFVGRDTGGTNVRHRSRAASSGTGDALSRLSRGSSSXXXXXXXXXXXSSRGLSTGGARQTTDQNPDERDGGECMNVEVGSARAEKNGAHALEDELDGMEDEGG-----ALLGRHHAALLRVVREQEDRGKQMIRRFEAKECDWLERVTTLEADLQGLRAEAVETRGRLRRAEESSPSAEVFKRYEAHVGILEAENTSLRDRNISLELRLLDILRQ---STAAASSRGGTTLETETNSHLSPSGCHQHQHHAALFSTRATTAGEKEGNKDSEICPKQHKYGTGALQQSDASATACVDGGTTSRFRVDGSVPVSGSVGEAGKPWASGGAPMCAAVLKDLRRRLKEAELEAKEMRAERAAVDKRDRLCQAQLRTLKEQRSKLREFMLRERELEAKLTASRLESARAEVAAEDKAAEVEHLLDNQAALVAEREDLVLALAEERKKSRQFDEDRVAYGHIRRFIERHAGGRPAEWDKE 1692
BLAST of mRNA_H-elongata_contig8224.15880.1 vs. uniprot
Match: W7TGU9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGU9_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 1.430e-10 Identity = 93/341 (27.27%), Postives = 144/341 (42.23%), Query Frame = 1
Query: 3277 RSVRISDLWEAHGGMCDEGREPHAEVLQQRSNAA---LLRVVQEQEERAKQMQCRFEAKENDWLERVTALEAELEGFRAEAVEMNGRLKRAEALSPSVDLFASYEAQMEILEAENADLRDANISLELRLLDLLREYSSSTASAAAVASSRAASATGVTAWPGEIVQEKRMDTSRGDGDL--------PLEGDDRSAWPAAIGVRK---------FMANTRLTSGAGMRSERASPAYTTALRDLRRRLKEAEREVNELRLGQAALEKRERQCQARLHIFSEHKSRVGELSRRERQHEADLTESRLECARAEAVAERNAAEIDRLREGQAALKVDKDALILEL 4239
R+ +L +A E + + + + S+ A LLR++ E++ER + + R + E E E + R E E+ G L+R + S D+F YEA + +E E LRD N+ LE LD ++ S + R D G+GD P R + G K F + T S A MR + PA T L L+ ++KE +R+VN+L+ L +RERQ + + +RV ++ + E+ L SRL+ ARAEA E EI LR+ +A L +D+D + EL
Sbjct: 196 RTTNYQELHQAQPSWAPETQHEESSLARPPSDIASGNLLRMLYEEKERGQGQKARIQGLEVALAETTQEKEVAMASARLEIHELRGMLRRVASESTFSDVFTLYEAHIARVEKEANVLRDRNVHLEAWRLDQRQQSEESRG-------------------------QGRADACGGEGDSQGCNRPDRPTPSPSRKNRKSLYGATKPAPHNAQDTFWSPTSALSTA-MRMNGSQPAPTGVLVALKGKVKELQRQVNDLKQETGELRRRERQFLVQKRMVETTWARVQKVQFMAKGLESSLASSRLDGARAEARLEEAEGEIRALRQREAVLVMDRDRCLQEL 510 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8224.15880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8224.15880.1 >prot_H-elongata_contig8224.15880.1 ID=prot_H-elongata_contig8224.15880.1|Name=mRNA_H-elongata_contig8224.15880.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1526bp MNASSKAAHEAVDEKSPTSNFCAVEDGGHGNTGIGSGATLRGSTSEVAESback to top mRNA from alignment at H-elongata_contig8224:1570..9832+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8224.15880.1 ID=mRNA_H-elongata_contig8224.15880.1|Name=mRNA_H-elongata_contig8224.15880.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=8263bp|location=Sequence derived from alignment at H-elongata_contig8224:1570..9832+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8224:1570..9832+ >mRNA_H-elongata_contig8224.15880.1 ID=mRNA_H-elongata_contig8224.15880.1|Name=mRNA_H-elongata_contig8224.15880.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=9156bp|location=Sequence derived from alignment at H-elongata_contig8224:1570..9832+ (Himanthalia elongata Himel1 dioecious)back to top |