mRNA_H-elongata_contig82185.15877.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig82185.15877.1 vs. uniprot
Match: A0A6V1VDI3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VDI3_HETAK) HSP 1 Score: 124 bits (311), Expect = 3.780e-34 Identity = 56/93 (60.22%), Postives = 71/93 (76.34%), Query Frame = 1
Query: 16 QVFDDPPCSCQNGICTTCAGLIREGTKGESYKLAIDALGEDQREKGFTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYEVKVDEEPKKLFGIF 294
+VFDDPP SC+NG+CTTC+ I EG +GE+YKLA+ LGE +GFT++CQT+ GPG+K+ LNQYDTVYEMQYGQYE ++ KK F F
Sbjct: 77 KVFDDPPFSCRNGVCTTCSCRIVEGKEGENYKLAVHGLGETALSQGFTMSCQTHVTGPGVKIELNQYDTVYEMQYGQYEKGTAKDTKKSFFGF 169
BLAST of mRNA_H-elongata_contig82185.15877.1 vs. uniprot
Match: A0A7S2XX00_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX00_9STRA) HSP 1 Score: 115 bits (287), Expect = 7.210e-31 Identity = 54/93 (58.06%), Postives = 65/93 (69.89%), Query Frame = 1
Query: 16 QVFDDPPCSCQNGICTTCAGLIREGTKGESYKLAIDALGEDQREKGFTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYEVKVDEEPKKLFGIF 294
++F D PCSC+NGICTTCA ++ G ES LA+ L +QREKG+TL CQ+Y GPGLKV L +YD VYE QYG+YE EE KK GIF
Sbjct: 50 ELFGDVPCSCRNGICTTCAAMVTGGE--ESLTLAVHGLSAEQREKGYTLCCQSYATGPGLKVELGKYDEVYEDQYGKYERNQQEEKKKFLGIF 140
BLAST of mRNA_H-elongata_contig82185.15877.1 vs. uniprot
Match: A0A835Z8W8_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8W8_9STRA) HSP 1 Score: 112 bits (281), Expect = 1.780e-29 Identity = 55/97 (56.70%), Postives = 70/97 (72.16%), Query Frame = 1
Query: 16 QVFDDPPCSCQNGICTTCAGLIREGTKGESYKLAIDALGEDQREKGFTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYEV-KVDEEP---KKLFGIF 294
VFDDPP SC+NG+CTTCAG I EG +S+ +A+ LG D GFTLTCQTYP GPGLKV LN+YD VY QYG++E ++D+ +K+FG+F
Sbjct: 86 MVFDDPPFSCRNGVCTTCAGFIEEGR--DSHLMAVHGLGRDILATGFTLTCQTYPTGPGLKVALNKYDEVYWEQYGKHEKSELDKRAAGERKVFGLF 180
BLAST of mRNA_H-elongata_contig82185.15877.1 vs. uniprot
Match: A0A4D9D4I2_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4I2_9STRA) HSP 1 Score: 111 bits (277), Expect = 7.540e-29 Identity = 52/95 (54.74%), Postives = 65/95 (68.42%), Query Frame = 1
Query: 16 QVFDDPPCSCQNGICTTCAGLIREGTKGESYKLAIDALGEDQREKGFTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYEVKVDEE--PKKLFGIF 294
+ F DPPC C+NG+CTTCA + G G S+ AI++L +Q+E GF L+CQTYPCGPGL+V LN + VYE QY +YE K EE KK F IF
Sbjct: 88 EAFGDPPCMCRNGVCTTCAAEVTRGGHG-SWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYETKAHEELEKKKGFNIF 181
BLAST of mRNA_H-elongata_contig82185.15877.1 vs. uniprot
Match: A0A4D9D796_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D796_9STRA) HSP 1 Score: 110 bits (274), Expect = 1.640e-28 Identity = 52/89 (58.43%), Postives = 60/89 (67.42%), Query Frame = 1
Query: 28 DPPCSCQNGICTTCAGLIREGTKGESYKLAIDALGEDQREKGFTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYEVKVDEEPKKLFGIF 294
D PCSC+NGICTTCAG + +S K AI L +Q + GF LTCQT+PCGPGL+V L YDTVYE QYGQYE K E K F +F
Sbjct: 85 DVPCSCRNGICTTCAGRVIANP--DSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKKATTEQKSKFNVF 171
BLAST of mRNA_H-elongata_contig82185.15877.1 vs. uniprot
Match: A0A0G4EXA3_VITBC (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EXA3_VITBC) HSP 1 Score: 104 bits (260), Expect = 6.600e-27 Identity = 45/78 (57.69%), Postives = 60/78 (76.92%), Query Frame = 1
Query: 19 VFDDPPCSCQNGICTTCAGLIREGTKGESYKLAIDALGEDQREKGFTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYE 252
V++DPPC C+NG+CT+CAG I G GE+Y + D+L E ++KG+ LTCQTY CGPGLKV LN+ + VY MQYG++E
Sbjct: 48 VWEDPPCDCRNGVCTSCAGRIVGGKLGEAYVINRDSLEEVTKDKGYVLTCQTYVCGPGLKVELNKNEEVYGMQYGRFE 125
BLAST of mRNA_H-elongata_contig82185.15877.1 vs. uniprot
Match: A0A835Z7P0_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7P0_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 1.960e-24 Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 1
Query: 19 VFDDPPCSCQNGICTTCAGLIREGTKGESYKLAIDALGEDQREKGFTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQY-----EVKVDEEPKKLFGIF 294
VFDDPP SC+NG+C+TCAG I G Y A+ LG+D +G+ LTCQTYP GPG+KV LN+ D VY QYG++ E K+ K+FG+F
Sbjct: 78 VFDDPPNSCRNGVCSTCAGHIDGGANSVRY--AVSGLGQDLLGEGYALTCQTYPAGPGVKVSLNKMDEVYMQQYGKHSEEEQERKMSGGKTKVFGMF 172
BLAST of mRNA_H-elongata_contig82185.15877.1 vs. uniprot
Match: UPI0019A12625 (2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=UPI0019A12625) HSP 1 Score: 64.7 bits (156), Expect = 2.120e-11 Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query: 34 PCSCQNGICTTCAGLIREGTKGESYKLAIDALGEDQREKGFTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYEVK 258
P SC GICTTCA I EGT +S + + A + RE+G+ L C YP LKV + DTVY++Q+GQ++ K
Sbjct: 38 PNSCNAGICTTCAAQITEGTVEQSDAMGVSA---ELREQGYALLCVAYPRSD-LKVETEKEDTVYQLQFGQFQKK 108
BLAST of mRNA_H-elongata_contig82185.15877.1 vs. uniprot
Match: A0A1Q8ZI63_9CYAN (Ferredoxin n=1 Tax=Leptolyngbya sp. 'hensonii' TaxID=1922337 RepID=A0A1Q8ZI63_9CYAN) HSP 1 Score: 60.8 bits (146), Expect = 6.780e-10 Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 1
Query: 22 FDDPPCSCQNGICTTCAGLIREGTKGESYKLAIDALGEDQREKGFTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYEVK 258
D P SC G+CTTCA + EGT +S + I + RE+GF L C +YP LKV + DTVY +Q+GQ++ K
Sbjct: 35 LDFLPNSCNAGVCTTCAAQLIEGTVDQSDGMGI---APEIREQGFALLCVSYPRSD-LKVETEKEDTVYYLQFGQFQKK 109
BLAST of mRNA_H-elongata_contig82185.15877.1 vs. uniprot
Match: A0A0D6AKF1_9CHRO (Soluble [2Fe-2S] ferredoxin n=1 Tax=Geminocystis sp. NIES-3709 TaxID=1617448 RepID=A0A0D6AKF1_9CHRO) HSP 1 Score: 60.5 bits (145), Expect = 1.290e-9 Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = 1
Query: 28 DPPCSCQNGICTTCAGLIREGTKGESYKLAIDALGEDQREKGFTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQY 249
+PP SC+NG CTTCA I EG E Y+ L D ++KG+ L C +YP L V D VYE+Q+G+Y
Sbjct: 38 EPPFSCRNGACTTCAVKIIEG---EVYQPEAMGLSPDLQKKGYALLCVSYPRS-NLVVETQDEDEVYELQFGRY 107 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82185.15877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig82185.15877.1 >prot_H-elongata_contig82185.15877.1 ID=prot_H-elongata_contig82185.15877.1|Name=mRNA_H-elongata_contig82185.15877.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp MYPCLQVFDDPPCSCQNGICTTCAGLIREGTKGESYKLAIDALGEDQREKback to top mRNA from alignment at H-elongata_contig82185:466..1507+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig82185.15877.1 ID=mRNA_H-elongata_contig82185.15877.1|Name=mRNA_H-elongata_contig82185.15877.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1042bp|location=Sequence derived from alignment at H-elongata_contig82185:466..1507+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig82185:466..1507+ >mRNA_H-elongata_contig82185.15877.1 ID=mRNA_H-elongata_contig82185.15877.1|Name=mRNA_H-elongata_contig82185.15877.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig82185:466..1507+ (Himanthalia elongata Himel1 dioecious)back to top |