mRNA_H-elongata_contig82185.15877.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82185.15877.1
Unique NamemRNA_H-elongata_contig82185.15877.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig82185.15877.1 vs. uniprot
Match: A0A6V1VDI3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VDI3_HETAK)

HSP 1 Score: 124 bits (311), Expect = 3.780e-34
Identity = 56/93 (60.22%), Postives = 71/93 (76.34%), Query Frame = 1
Query:   16 QVFDDPPCSCQNGICTTCAGLIREGTKGESYKLAIDALGEDQREKGFTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYEVKVDEEPKKLFGIF 294
            +VFDDPP SC+NG+CTTC+  I EG +GE+YKLA+  LGE    +GFT++CQT+  GPG+K+ LNQYDTVYEMQYGQYE    ++ KK F  F
Sbjct:   77 KVFDDPPFSCRNGVCTTCSCRIVEGKEGENYKLAVHGLGETALSQGFTMSCQTHVTGPGVKIELNQYDTVYEMQYGQYEKGTAKDTKKSFFGF 169          
BLAST of mRNA_H-elongata_contig82185.15877.1 vs. uniprot
Match: A0A7S2XX00_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX00_9STRA)

HSP 1 Score: 115 bits (287), Expect = 7.210e-31
Identity = 54/93 (58.06%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   16 QVFDDPPCSCQNGICTTCAGLIREGTKGESYKLAIDALGEDQREKGFTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYEVKVDEEPKKLFGIF 294
            ++F D PCSC+NGICTTCA ++  G   ES  LA+  L  +QREKG+TL CQ+Y  GPGLKV L +YD VYE QYG+YE    EE KK  GIF
Sbjct:   50 ELFGDVPCSCRNGICTTCAAMVTGGE--ESLTLAVHGLSAEQREKGYTLCCQSYATGPGLKVELGKYDEVYEDQYGKYERNQQEEKKKFLGIF 140          
BLAST of mRNA_H-elongata_contig82185.15877.1 vs. uniprot
Match: A0A835Z8W8_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8W8_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.780e-29
Identity = 55/97 (56.70%), Postives = 70/97 (72.16%), Query Frame = 1
Query:   16 QVFDDPPCSCQNGICTTCAGLIREGTKGESYKLAIDALGEDQREKGFTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYEV-KVDEEP---KKLFGIF 294
             VFDDPP SC+NG+CTTCAG I EG   +S+ +A+  LG D    GFTLTCQTYP GPGLKV LN+YD VY  QYG++E  ++D+     +K+FG+F
Sbjct:   86 MVFDDPPFSCRNGVCTTCAGFIEEGR--DSHLMAVHGLGRDILATGFTLTCQTYPTGPGLKVALNKYDEVYWEQYGKHEKSELDKRAAGERKVFGLF 180          
BLAST of mRNA_H-elongata_contig82185.15877.1 vs. uniprot
Match: A0A4D9D4I2_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4I2_9STRA)

HSP 1 Score: 111 bits (277), Expect = 7.540e-29
Identity = 52/95 (54.74%), Postives = 65/95 (68.42%), Query Frame = 1
Query:   16 QVFDDPPCSCQNGICTTCAGLIREGTKGESYKLAIDALGEDQREKGFTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYEVKVDEE--PKKLFGIF 294
            + F DPPC C+NG+CTTCA  +  G  G S+  AI++L  +Q+E GF L+CQTYPCGPGL+V LN  + VYE QY +YE K  EE   KK F IF
Sbjct:   88 EAFGDPPCMCRNGVCTTCAAEVTRGGHG-SWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYETKAHEELEKKKGFNIF 181          
BLAST of mRNA_H-elongata_contig82185.15877.1 vs. uniprot
Match: A0A4D9D796_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D796_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.640e-28
Identity = 52/89 (58.43%), Postives = 60/89 (67.42%), Query Frame = 1
Query:   28 DPPCSCQNGICTTCAGLIREGTKGESYKLAIDALGEDQREKGFTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYEVKVDEEPKKLFGIF 294
            D PCSC+NGICTTCAG +      +S K AI  L  +Q + GF LTCQT+PCGPGL+V L  YDTVYE QYGQYE K   E K  F +F
Sbjct:   85 DVPCSCRNGICTTCAGRVIANP--DSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKKATTEQKSKFNVF 171          
BLAST of mRNA_H-elongata_contig82185.15877.1 vs. uniprot
Match: A0A0G4EXA3_VITBC (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EXA3_VITBC)

HSP 1 Score: 104 bits (260), Expect = 6.600e-27
Identity = 45/78 (57.69%), Postives = 60/78 (76.92%), Query Frame = 1
Query:   19 VFDDPPCSCQNGICTTCAGLIREGTKGESYKLAIDALGEDQREKGFTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYE 252
            V++DPPC C+NG+CT+CAG I  G  GE+Y +  D+L E  ++KG+ LTCQTY CGPGLKV LN+ + VY MQYG++E
Sbjct:   48 VWEDPPCDCRNGVCTSCAGRIVGGKLGEAYVINRDSLEEVTKDKGYVLTCQTYVCGPGLKVELNKNEEVYGMQYGRFE 125          
BLAST of mRNA_H-elongata_contig82185.15877.1 vs. uniprot
Match: A0A835Z7P0_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7P0_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.960e-24
Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 1
Query:   19 VFDDPPCSCQNGICTTCAGLIREGTKGESYKLAIDALGEDQREKGFTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQY-----EVKVDEEPKKLFGIF 294
            VFDDPP SC+NG+C+TCAG I  G     Y  A+  LG+D   +G+ LTCQTYP GPG+KV LN+ D VY  QYG++     E K+     K+FG+F
Sbjct:   78 VFDDPPNSCRNGVCSTCAGHIDGGANSVRY--AVSGLGQDLLGEGYALTCQTYPAGPGVKVSLNKMDEVYMQQYGKHSEEEQERKMSGGKTKVFGMF 172          
BLAST of mRNA_H-elongata_contig82185.15877.1 vs. uniprot
Match: UPI0019A12625 (2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=UPI0019A12625)

HSP 1 Score: 64.7 bits (156), Expect = 2.120e-11
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query:   34 PCSCQNGICTTCAGLIREGTKGESYKLAIDALGEDQREKGFTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYEVK 258
            P SC  GICTTCA  I EGT  +S  + + A   + RE+G+ L C  YP    LKV   + DTVY++Q+GQ++ K
Sbjct:   38 PNSCNAGICTTCAAQITEGTVEQSDAMGVSA---ELREQGYALLCVAYPRSD-LKVETEKEDTVYQLQFGQFQKK 108          
BLAST of mRNA_H-elongata_contig82185.15877.1 vs. uniprot
Match: A0A1Q8ZI63_9CYAN (Ferredoxin n=1 Tax=Leptolyngbya sp. 'hensonii' TaxID=1922337 RepID=A0A1Q8ZI63_9CYAN)

HSP 1 Score: 60.8 bits (146), Expect = 6.780e-10
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 1
Query:   22 FDDPPCSCQNGICTTCAGLIREGTKGESYKLAIDALGEDQREKGFTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYEVK 258
             D  P SC  G+CTTCA  + EGT  +S  + I     + RE+GF L C +YP    LKV   + DTVY +Q+GQ++ K
Sbjct:   35 LDFLPNSCNAGVCTTCAAQLIEGTVDQSDGMGI---APEIREQGFALLCVSYPRSD-LKVETEKEDTVYYLQFGQFQKK 109          
BLAST of mRNA_H-elongata_contig82185.15877.1 vs. uniprot
Match: A0A0D6AKF1_9CHRO (Soluble [2Fe-2S] ferredoxin n=1 Tax=Geminocystis sp. NIES-3709 TaxID=1617448 RepID=A0A0D6AKF1_9CHRO)

HSP 1 Score: 60.5 bits (145), Expect = 1.290e-9
Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = 1
Query:   28 DPPCSCQNGICTTCAGLIREGTKGESYKLAIDALGEDQREKGFTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQY 249
            +PP SC+NG CTTCA  I EG   E Y+     L  D ++KG+ L C +YP    L V     D VYE+Q+G+Y
Sbjct:   38 EPPFSCRNGACTTCAVKIIEG---EVYQPEAMGLSPDLQKKGYALLCVSYPRS-NLVVETQDEDEVYELQFGRY 107          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82185.15877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1VDI3_HETAK3.780e-3460.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XX00_9STRA7.210e-3158.06Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z8W8_9STRA1.780e-2956.702Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A4D9D4I2_9STRA7.540e-2954.742Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A4D9D796_9STRA1.640e-2858.432Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A0G4EXA3_VITBC6.600e-2757.692Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A835Z7P0_9STRA1.960e-2450.522Fe-2S ferredoxin-type domain-containing protein n... [more]
UPI0019A126252.120e-1145.332Fe-2S iron-sulfur cluster binding domain-containi... [more]
A0A1Q8ZI63_9CYAN6.780e-1043.04Ferredoxin n=1 Tax=Leptolyngbya sp. 'hensonii' Tax... [more]
A0A0D6AKF1_9CHRO1.290e-944.59Soluble [2Fe-2S] ferredoxin n=1 Tax=Geminocystis s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82185contigH-elongata_contig82185:466..1507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score66.2
Seed ortholog evalue9.6e-09
Seed eggNOG ortholog166318.Syn8016DRAFT_2184
Preferred namepetF1
KEGG koko:K02639
KEGG Pathwayko00195,map00195
EggNOG free text desc.Ferredoxin
EggNOG OGs1G6QX@1117,1H0PQ@1129,COG1018@1,COG1018@2
COG Functional cat.C
Best tax levelSynechococcus
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categoryother localisation
Ec32 ortholog description2Fe-2S ferredoxin-type domain
Ec32 orthologEc-06_010720.1
Exons2
Model size297
Cds size297
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931228.9391148-CDS-H-elongata_contig82185:465..6151622931228.9391148-CDS-H-elongata_contig82185:465..615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82185 466..615 +
1691679750.8412697-CDS-H-elongata_contig82185:465..6151691679750.8412697-CDS-H-elongata_contig82185:465..615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82185 466..615 +
1622931228.96269-CDS-H-elongata_contig82185:1360..15071622931228.96269-CDS-H-elongata_contig82185:1360..1507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82185 1361..1507 +
1691679750.8540995-CDS-H-elongata_contig82185:1360..15071691679750.8540995-CDS-H-elongata_contig82185:1360..1507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82185 1361..1507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82185.15877.1prot_H-elongata_contig82185.15877.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82185 466..1507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82185.15877.1

>prot_H-elongata_contig82185.15877.1 ID=prot_H-elongata_contig82185.15877.1|Name=mRNA_H-elongata_contig82185.15877.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MYPCLQVFDDPPCSCQNGICTTCAGLIREGTKGESYKLAIDALGEDQREK
GFTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYEVKVDEEPKKLFGIF*
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mRNA from alignment at H-elongata_contig82185:466..1507+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82185.15877.1 ID=mRNA_H-elongata_contig82185.15877.1|Name=mRNA_H-elongata_contig82185.15877.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1042bp|location=Sequence derived from alignment at H-elongata_contig82185:466..1507+ (Himanthalia elongata Himel1 dioecious)
ATGTATCCGTGCCTTCAGGTTTTCGATGACCCGCCGTGCTCGTGCCAGAA CGGCATCTGTACAACGTGCGCCGGGCTCATCCGGGAGGGCACCAAGGGTG AGAGCTACAAGCTGGCCATCGACGCATTAGGGGAAGACCAACGGGAGAAG GTGGGTGGTGGATGGGACCGGGTCGAGAGGGAGTGAGAGAGGAAGGAATG CTTGGGTGTGGCTGACCTATATCGACGTCTCCTTGACAGACGCGATGCGA TTCGGCTCCTTCCTTTGTGAATTGATTCGGCTCCTTCCAAGCGTCGCCGG GTTTTGTACGATAGATGTGTGGGTTCTCTCTTTTCCCTCCTGGCGGTACC GTATCCATGCAAAAAATGGGACTAGACGAGAGGTTGCCGGCAATAAAGAG ACTGAGCGGACAATGCAAGAAAGGCGATTGGTTGACAATCCATCGAGTGG GCTAATCTAGAACAGAAAGGATGGAAAGAATTATTGGAAAAATCCCTGAA GAGTGGGCGTTGGGCAATGAAAACTCTGGGTGGTTATCATAGGAAAATAA CAGACTCTTCTTGGAGGCAGAGAAAATAGGGAAGAACGATTGGCCATCCG TCATCAGTCATGCAGGGTTCAGTCCTCCCAGCAAAACTTGGAGGCGTCTC CCGCTCCGCCTTGCCTCCTCTACTCCGAATCTCCCTCGTTCCACGAGGCG TAAGAAAATTATTGACGTCGTGACAGGAACGTACGGCGACCCGTCGGTCA CAACTCAAATTACCCTCCTTCATCCCTAGAGTCGCTGCACCACTGCTGCT ACGTTCACCCTGGACCCTCTTCCATTAAACCCTTTTGGCTTCCCTCCTCT TCCACACCCCTTGCCCCCCTGTCACGCCCCTCCGTGCAAACCCAGGGATT CACGCTGACTTGTCAGACGTACCCCTGCGGGCCGGGACTGAAGGTATTGT TGAACCAGTACGACACGGTCTACGAGATGCAGTACGGCCAGTACGAGGTC AAGGTGGACGAAGAGCCTAAGAAGTTGTTCGGAATTTTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig82185:466..1507+

>mRNA_H-elongata_contig82185.15877.1 ID=mRNA_H-elongata_contig82185.15877.1|Name=mRNA_H-elongata_contig82185.15877.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig82185:466..1507+ (Himanthalia elongata Himel1 dioecious)
ATGTATCCGTGCCTTCAGGTTTTCGATGACCCGCCGTGCTCGTGCCAGAA
CGGCATCTGTACAACGTGCGCCGGGCTCATCCGGGAGGGCACCAAGGGTG
AGAGCTACAAGCTGGCCATCGACGCATTAGGGGAAGACCAACGGGAGAAG
ATGTATCCGTGCCTTCAGGTTTTCGATGACCCGCCGTGCTCGTGCCAGAA
CGGCATCTGTACAACGTGCGCCGGGCTCATCCGGGAGGGCACCAAGGGTG
AGAGCTACAAGCTGGCCATCGACGCATTAGGGGAAGACCAACGGGAGAAG
GGATTCACGCTGACTTGTCAGACGTACCCCTGCGGGCCGGGACTGAAGGT
ATTGTTGAACCAGTACGACACGGTCTACGAGATGCAGTACGGCCAGTACG
AGGTCAAGGTGGACGAAGAGCCTAAGAAGTTGTTCGGAATTTTCTGAGGA
TTCACGCTGACTTGTCAGACGTACCCCTGCGGGCCGGGACTGAAGGTATT
GTTGAACCAGTACGACACGGTCTACGAGATGCAGTACGGCCAGTACGAGG
TCAAGGTGGACGAAGAGCCTAAGAAGTTGTTCGGAATTTTCTGA
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