prot_H-elongata_contig82097.15873.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig82097.15873.1
Unique Nameprot_H-elongata_contig82097.15873.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length149
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82097.15873.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 41..96
e-value: 3.1E-10
score: 42.1
coord: 97..148
e-value: 4.3E-7
score: 32.1
coord: 1..40
e-value: 3.4E-6
score: 29.2
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 39..82
e-value: 8.6E-5
score: 23.1
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 92..133
score: 9.457
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 36..80
score: 11.271
NoneNo IPR availablePANTHERPTHR10131:SF101TNF RECEPTOR-ASSOCIATED FACTOR FAMILY PROTEIN DDB_G0268444-RELATEDcoord: 2..80
NoneNo IPR availablePANTHERPTHR10131TNF RECEPTOR ASSOCIATED FACTORcoord: 2..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82097contigH-elongata_contig82097:337..1118 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82097.15873.1mRNA_H-elongata_contig82097.15873.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig82097 313..1118 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig82097.15873.1 ID=prot_H-elongata_contig82097.15873.1|Name=mRNA_H-elongata_contig82097.15873.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
MRQEKLSEHLEATCPLRRVPCDACGGSVPLPDHAEHVAERCPRVLRRCTN
GCGSCLRGEDLAHHLSAECPKRILPCPLGCSEPELWAEEVESHTRVGCPL
LKLPCRAGCGMQVTASARQVHEEKECPERIVTCACGTRHPFSKMNEHR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF