mRNA_H-elongata_contig82097.15873.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82097.15873.1
Unique NamemRNA_H-elongata_contig82097.15873.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82097.15873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82097contigH-elongata_contig82097:313..1118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue2.6e-18
Seed eggNOG ortholog2880.D7FW96
KEGG koko:K08873
KEGG Pathwayko03015,map03015
EggNOG free text desc.TNF receptor-associated factor
EggNOG OGsCOG0666@1,KOG0297@1,KOG0297@2759,KOG4177@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size471
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82097.15873.1prot_H-elongata_contig82097.15873.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82097 337..1118 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931228.5501535-UTR-H-elongata_contig82097:312..3361622931228.5501535-UTR-H-elongata_contig82097:312..336Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82097 313..336 +
1691679750.6919703-UTR-H-elongata_contig82097:312..3361691679750.6919703-UTR-H-elongata_contig82097:312..336Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82097 313..336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931228.5820916-CDS-H-elongata_contig82097:336..4871622931228.5820916-CDS-H-elongata_contig82097:336..487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82097 337..487 +
1691679750.7106016-CDS-H-elongata_contig82097:336..4871691679750.7106016-CDS-H-elongata_contig82097:336..487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82097 337..487 +
1622931228.597088-CDS-H-elongata_contig82097:822..11181622931228.597088-CDS-H-elongata_contig82097:822..1118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82097 823..1118 +
1691679750.722373-CDS-H-elongata_contig82097:822..11181691679750.722373-CDS-H-elongata_contig82097:822..1118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82097 823..1118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82097.15873.1

>prot_H-elongata_contig82097.15873.1 ID=prot_H-elongata_contig82097.15873.1|Name=mRNA_H-elongata_contig82097.15873.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
MRQEKLSEHLEATCPLRRVPCDACGGSVPLPDHAEHVAERCPRVLRRCTN
GCGSCLRGEDLAHHLSAECPKRILPCPLGCSEPELWAEEVESHTRVGCPL
LKLPCRAGCGMQVTASARQVHEEKECPERIVTCACGTRHPFSKMNEHR*
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mRNA from alignment at H-elongata_contig82097:313..1118+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82097.15873.1 ID=mRNA_H-elongata_contig82097.15873.1|Name=mRNA_H-elongata_contig82097.15873.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=806bp|location=Sequence derived from alignment at H-elongata_contig82097:313..1118+ (Himanthalia elongata Himel1 dioecious)
TGCTCTCTAGGCTGCGGGGCGGAGATGCGACAGGAGAAGCTGAGCGAACA
CCTCGAGGCAACGTGCCCTCTCCGACGCGTTCCTTGCGACGCTTGCGGGG
GTTCCGTGCCGCTTCCAGACCATGCCGAACATGTCGCCGAGCGTTGTCCC
AGAGTTCTTCGCCGATGCACGAACGGTGCGCTTCGTGGCTGTAGCCTCAT
TCGGGTGACATGCTGCTGCACTCGACAAGTGTAGCGAGTCTAAGATTAGC
GGGAGATTAGGGCAGGAAGGAGGGGGAGAAGGGCAGGGGTCTAGAGCGTG
CTCTGGCTTCAACATTTTGATTCGAGGAAGAATATCACAAATGTTTTAGC
AAAATAAGTAATGTACATGGATGGGGAGTTCAATTTGTTTGGTGATTTAG
CTATGAGTTCATATGTTTCTTAAGGAAAAATGTCTTTGCGTATAATATGT
ATTTCTTCTTCATCGCCTGATATATCGCTCTCTCTCTCTCGCCTTTTCTC
TCTCTTGAAGGATGCGGTTCCTGCCTCCGGGGGGAAGACCTTGCACATCA
CCTCTCAGCAGAGTGCCCAAAGCGAATTCTCCCGTGCCCACTGGGGTGTT
CAGAACCGGAGCTGTGGGCAGAAGAGGTGGAATCTCACACGAGAGTCGGC
TGTCCGTTGTTGAAGTTACCGTGCCGAGCGGGTTGCGGAATGCAGGTTAC
GGCGAGCGCGCGTCAGGTCCACGAAGAAAAGGAGTGTCCCGAGAGGATTG
TGACGTGTGCATGCGGCACGAGGCACCCATTTTCAAAGATGAACGAACAC
AGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig82097:313..1118+

>mRNA_H-elongata_contig82097.15873.1 ID=mRNA_H-elongata_contig82097.15873.1|Name=mRNA_H-elongata_contig82097.15873.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig82097:313..1118+ (Himanthalia elongata Himel1 dioecious)
ATGCGACAGGAGAAGCTGAGCGAACACCTCGAGGCAACGTGCCCTCTCCG
ACGCGTTCCTTGCGACGCTTGCGGGGGTTCCGTGCCGCTTCCAGACCATG
CCGAACATGTCGCCGAGCGTTGTCCCAGAGTTCTTCGCCGATGCACGAAC
GATGCGACAGGAGAAGCTGAGCGAACACCTCGAGGCAACGTGCCCTCTCC
GACGCGTTCCTTGCGACGCTTGCGGGGGTTCCGTGCCGCTTCCAGACCAT
GCCGAACATGTCGCCGAGCGTTGTCCCAGAGTTCTTCGCCGATGCACGAA
CGGATGCGGTTCCTGCCTCCGGGGGGAAGACCTTGCACATCACCTCTCAG
CAGAGTGCCCAAAGCGAATTCTCCCGTGCCCACTGGGGTGTTCAGAACCG
GAGCTGTGGGCAGAAGAGGTGGAATCTCACACGAGAGTCGGCTGTCCGTT
GTTGAAGTTACCGTGCCGAGCGGGTTGCGGAATGCAGGTTACGGCGAGCG
CGCGTCAGGTCCACGAAGAAAAGGAGTGTCCCGAGAGGATTGTGACGTGT
GCATGCGGCACGAGGCACCCATTTTCAAAGATGAACGAACACAGGTAGGA
TGCGGTTCCTGCCTCCGGGGGGAAGACCTTGCACATCACCTCTCAGCAGA
GTGCCCAAAGCGAATTCTCCCGTGCCCACTGGGGTGTTCAGAACCGGAGC
TGTGGGCAGAAGAGGTGGAATCTCACACGAGAGTCGGCTGTCCGTTGTTG
AAGTTACCGTGCCGAGCGGGTTGCGGAATGCAGGTTACGGCGAGCGCGCG
TCAGGTCCACGAAGAAAAGGAGTGTCCCGAGAGGATTGTGACGTGTGCAT
GCGGCACGAGGCACCCATTTTCAAAGATGAACGAACACAGGTAG
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