mRNA_H-elongata_contig82068.15870.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82068.15870.1
Unique NamemRNA_H-elongata_contig82068.15870.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig82068.15870.1 vs. uniprot
Match: D7FL68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL68_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.590e-32
Identity = 60/77 (77.92%), Postives = 71/77 (92.21%), Query Frame = 1 
Query:    1 MGAAGTEGVTGLYQVSLGEAKAAGQSFGSLKAVVMELPITDIRGKGSKGLDKGVSGILGMDFLSRFDVKIDFRTGAA 231
            MG+AGT+G++GLYQVSLGE K AGQSFG LK VVMELPITDI GKGS+G++KGVSGILGMDFL+RFDVK+DF++G A
Sbjct:    1 MGSAGTDGMSGLYQVSLGEVKVAGQSFGQLKPVVMELPITDITGKGSEGMEKGVSGILGMDFLARFDVKLDFQSGDA 77
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BLAST of mRNA_H-elongata_contig82068.15870.1 vs. uniprot
Match: A0A6H5JIG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG9_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 7.060e-32
Identity = 60/77 (77.92%), Postives = 71/77 (92.21%), Query Frame = 1 
Query:    1 MGAAGTEGVTGLYQVSLGEAKAAGQSFGSLKAVVMELPITDIRGKGSKGLDKGVSGILGMDFLSRFDVKIDFRTGAA 231
            MG+AGT+G++GLYQVSLGE K AGQSFG LK VVMELPITDI GKGS+G++KGVSGILGMDFL+RFDVK+DF++G A
Sbjct:   70 MGSAGTDGMSGLYQVSLGEVKVAGQSFGQLKPVVMELPITDITGKGSEGMEKGVSGILGMDFLARFDVKLDFQSGDA 146
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82068.15870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FL68_ECTSI1.590e-3277.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIG9_9PHAE7.060e-3277.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82068contigH-elongata_contig82068:203..1214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.5
Seed ortholog evalue8.7e-26
Seed eggNOG ortholog2880.D7FL68
EggNOG OGs2C0E3@1,2S92I@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_005300.1
Exons2
Model size231
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931228.2735472-CDS-H-elongata_contig82068:202..2721622931228.2735472-CDS-H-elongata_contig82068:202..272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82068 203..272 +
1691679750.5742998-CDS-H-elongata_contig82068:202..2721691679750.5742998-CDS-H-elongata_contig82068:202..272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82068 203..272 +
1622931228.2916071-CDS-H-elongata_contig82068:1053..12141622931228.2916071-CDS-H-elongata_contig82068:1053..1214Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82068 1054..1214 +
1691679750.585327-CDS-H-elongata_contig82068:1053..12141691679750.585327-CDS-H-elongata_contig82068:1053..1214Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82068 1054..1214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82068.15870.1prot_H-elongata_contig82068.15870.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82068 203..1214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82068.15870.1

>prot_H-elongata_contig82068.15870.1 ID=prot_H-elongata_contig82068.15870.1|Name=mRNA_H-elongata_contig82068.15870.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
MGAAGTEGVTGLYQVSLGEAKAAGQSFGSLKAVVMELPITDIRGKGSKGL
DKGVSGILGMDFLSRFDVKIDFRTGAA
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mRNA from alignment at H-elongata_contig82068:203..1214+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82068.15870.1 ID=mRNA_H-elongata_contig82068.15870.1|Name=mRNA_H-elongata_contig82068.15870.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1012bp|location=Sequence derived from alignment at H-elongata_contig82068:203..1214+ (Himanthalia elongata Himel1 dioecious)
ATGGGGGCGGCGGGGACCGAAGGCGTCACCGGATTGTATCAGGTGTCCCT
CGGGGAAGCAAAAGCGGCAGGTTAGAGCCTAGCTGCCGGCTGGGCATCAC
GTGCAAAATGCCTGCAGATCTGGGATCCCCTTGCGCCCGATCTCCGACGT
GAATCGAGTATACGAAGTGCACACTGCTTCTTTGTTTTCATCAAAAACAT
TATACCAAGGTAGCGTATATTCGAGAAAATTATTTTGCTCCTCAAAACAT
GGTTGAACGAATGCTATGATTGATTGCTTCGTCGATTAAATTCTCTGATA
AGCTGATGTCAATACCCCAGCCCGTAGTGTAGTAACAGTAGGTATATTTG
TGGAGTTTTTGCTTTAAAAGTGTAACCTCGTTTAAACTTTAAACTTTAAA
CCGTTACTCCGAACATCTACGCCTCCGTTACTCCGCATTGTCATATTCGA
GTCGGCCAAAATCAAGAGGATCTCGTATTGTCATGTTCGAGTCGATACTT
TGTTCAAGATCATTTAAAGATTTTAATTTGTCGTGGTTTTGACCGTTACA
GTAGACCATTGCGGGTGGTTTTTCTTCTTCTTGAGACAACCCGTTTTTCG
TGTTCCGCGCTAATCTGTCGTGGCTCGTCGCGTAAGTCGTTCCCAAGCAT
ACCAATCTATTTAATAGCAGGTACAATGACTACTAGTACAGGGGAAGCAA
CTCGTTATCCTTGGGATTGTCTCAGACTCCCCCATCCACCAGTAGTGTGG
GTGTATTTATATGCATCATCACCATATAAATATATATTGTATATTTGAGT
CCCTTAAGGCGGTGGTCCCATCCCATCTTTTTCCCGTCCACACGCCTCTA
GGGCAGTCGTTCGGATCCCTTAAGGCGGTGGTCATGGAGCTGCCCATCAC
GGACATCAGGGGTAAGGGTTCCAAGGGTCTTGATAAGGGGGTTTCAGGCA
TCCTGGGGATGGACTTCTTGTCGAGGTTCGATGTGAAGATCGACTTCCGA
ACAGGTGCTGCT
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Coding sequence (CDS) from alignment at H-elongata_contig82068:203..1214+

>mRNA_H-elongata_contig82068.15870.1 ID=mRNA_H-elongata_contig82068.15870.1|Name=mRNA_H-elongata_contig82068.15870.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig82068:203..1214+ (Himanthalia elongata Himel1 dioecious)
ATGGGGGCGGCGGGGACCGAAGGCGTCACCGGATTGTATCAGGTGTCCCT
CGGGGAAGCAAAAGCGGCAGATGGGGGCGGCGGGGACCGAAGGCGTCACC
GGATTGTATCAGGTGTCCCTCGGGGAAGCAAAAGCGGCAGGGCAGTCGTT
CGGATCCCTTAAGGCGGTGGTCATGGAGCTGCCCATCACGGACATCAGGG
GTAAGGGTTCCAAGGGTCTTGATAAGGGGGTTTCAGGCATCCTGGGGATG
GACTTCTTGTCGAGGTTCGATGTGAAGATCGACTTCCGAACAGGTGCTGC
TGGCAGTCGTTCGGATCCCTTAAGGCGGTGGTCATGGAGCTGCCCATCAC
GGACATCAGGGGTAAGGGTTCCAAGGGTCTTGATAAGGGGGTTTCAGGCA
TCCTGGGGATGGACTTCTTGTCGAGGTTCGATGTGAAGATCGACTTCCGA
ACAGGTGCTGCT
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