mRNA_H-elongata_contig82007.15866.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82007.15866.1
Unique NamemRNA_H-elongata_contig82007.15866.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig82007.15866.1 vs. uniprot
Match: A0A6H5JEV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV9_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 1.170e-92
Identity = 159/243 (65.43%), Postives = 189/243 (77.78%), Query Frame = 1 
Query:    1 GKVWLGQHGMRTSHDSVGGYEWSMLLLHLAQARRVNSRMPALSIFQAAMKFIAEGGISRRDTIRYGCLTVNATVLSGDGADQDRALPLTTHEQESFKEAFPAVMVDTSLGFNVFARVSSSAVEELEMTAKASVSLLQGRPGAVFRRLFMTRSTLWRKCDAFVQARAVDGPRREDGQMKKSAEEVGEQ----EAEEEEGLLDRPLWSHVAQRVTGLLRDGLGNRCVLARPLCGAAGEASEDFQG 717
            GKVWLGQHGMRTSHDS+G YEWSMLLLHL+Q RRVN+RM ALS+FQ  +KFIA+GG+S +      CLTV+  V +G   +Q     LT  E+++FK+AF AVMVDTSLGFNVFAR+SSSAV ELEMTAKAS+++LQGRPGA FRRL MTR+TLWRKCDAFVQ   V     ++G+  K AE  G        +EEEGLLD+PLW HV+ RVTG+LR+GLG+RCVLARPLCG AGEA+ DFQG
Sbjct:  390 GKVWLGQHGMRTSHDSMGSYEWSMLLLHLSQTRRVNARMAALSMFQVVLKFIADGGLSSK------CLTVD--VSTGGPDEQSHKRGLTLEEEKTFKDAFAAVMVDTSLGFNVFARLSSSAVAELEMTAKASIAVLQGRPGAAFRRLLMTRTTLWRKCDAFVQVPLVSA-NADNGKRWKEAEATGTDMEKLREQEEEGLLDKPLWRHVSDRVTGILREGLGDRCVLARPLCGVAGEAAHDFQG 623
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BLAST of mRNA_H-elongata_contig82007.15866.1 vs. uniprot
Match: D7FGX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX0_ECTSI)

HSP 1 Score: 300 bits (769), Expect = 9.530e-91
Identity = 157/242 (64.88%), Postives = 187/242 (77.27%), Query Frame = 1 
Query:    1 GKVWLGQHGMRTSHDSVGGYEWSMLLLHLAQARRVNSRMPALSIFQAAMKFIAEGGISRRDTIRYGCLTVNATVLSGDGADQDRALPLTTHEQESFKEAFPAVMVDTSLGFNVFARVSSSAVEELEMTAKASVSLLQGRPGAVFRRLFMTRSTLWRKCDAFVQARAVDGPRREDGQMKKSAEEVGEQE---AEEEEGLLDRPLWSHVAQRVTGLLRDGLGNRCVLARPLCGAAGEASEDFQG 717
            GKVWLGQHGMRTSHDS+G YEWSMLLLHL+Q RRVN+RM ALS+FQ  +KFIA+G +S +      CLTV+  V +G   +Q +   LT  E+++FK+AF AVMVDTSLGFNV AR+SSSAV ELEMTAKAS+++LQGRPGA FRRL MTR+TLWRKCDAFVQ   V        + K++A    + E    EEEEGLLDRPLW HV+ RVTG+LR+GLG+RCVLARPLCG AGEA+ DFQG
Sbjct:  385 GKVWLGQHGMRTSHDSMGSYEWSMLLLHLSQTRRVNARMAALSMFQVVLKFIADGELSSK------CLTVD--VSTGGPDEQSQRRGLTLEEEKTFKDAFAAVMVDTSLGFNVLARLSSSAVAELEMTAKASIAVLQGRPGAAFRRLLMTRTTLWRKCDAFVQVPLVSADADNGKRWKEAAATGTDMEKLRGEEEEGLLDRPLWRHVSDRVTGILREGLGDRCVLARPLCGVAGEAAHDFQG 618
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82007.15866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JEV9_9PHAE1.170e-9265.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGX0_ECTSI9.530e-9164.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82007contigH-elongata_contig82007:250..2756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score279.6
Seed ortholog evalue1.3e-72
Seed eggNOG ortholog2880.D7FGX0
Preferred nameNOL6
KEGG koko:K08018,ko:K14544
KEGG Pathwayko03008,ko04010,ko04015,ko04530,map03008,map04010,map04015,map04530
GOsGO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000462,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030628,GO:0030684,GO:0030686,GO:0031503,GO:0031974,GO:0031981,GO:0032040,GO:0032545,GO:0032991,GO:0033036,GO:0034456,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0036002,GO:0042254,GO:0042274,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0089701,GO:0090304,GO:0097064,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.tRNA export from nucleus
EggNOG OGsKOG2054@1,KOG2054@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Exons4
Model size741
Cds size714
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82007.15866.1prot_H-elongata_contig82007.15866.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82007 277..2756 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931227.7902381-UTR-H-elongata_contig82007:249..2761622931227.7902381-UTR-H-elongata_contig82007:249..276Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82007 250..276 +
1691679750.4549248-UTR-H-elongata_contig82007:249..2761691679750.4549248-UTR-H-elongata_contig82007:249..276Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82007 250..276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931227.812827-CDS-H-elongata_contig82007:276..4451622931227.812827-CDS-H-elongata_contig82007:276..445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82007 277..445 +
1691679750.4676812-CDS-H-elongata_contig82007:276..4451691679750.4676812-CDS-H-elongata_contig82007:276..445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82007 277..445 +
1622931227.901628-CDS-H-elongata_contig82007:988..11351622931227.901628-CDS-H-elongata_contig82007:988..1135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82007 989..1135 +
1691679750.4780242-CDS-H-elongata_contig82007:988..11351691679750.4780242-CDS-H-elongata_contig82007:988..1135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82007 989..1135 +
1622931227.9251883-CDS-H-elongata_contig82007:1358..15111622931227.9251883-CDS-H-elongata_contig82007:1358..1511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82007 1359..1511 +
1691679750.4880445-CDS-H-elongata_contig82007:1358..15111691679750.4880445-CDS-H-elongata_contig82007:1358..1511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82007 1359..1511 +
1622931227.9496522-CDS-H-elongata_contig82007:2511..27561622931227.9496522-CDS-H-elongata_contig82007:2511..2756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82007 2512..2756 +
1691679750.4999592-CDS-H-elongata_contig82007:2511..27561691679750.4999592-CDS-H-elongata_contig82007:2511..2756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82007 2512..2756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82007.15866.1

>prot_H-elongata_contig82007.15866.1 ID=prot_H-elongata_contig82007.15866.1|Name=mRNA_H-elongata_contig82007.15866.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=238bp
MRTSHDSVGGYEWSMLLLHLAQARRVNSRMPALSIFQAAMKFIAEGGISR
RDTIRYGCLTVNATVLSGDGADQDRALPLTTHEQESFKEAFPAVMVDTSL
GFNVFARVSSSAVEELEMTAKASVSLLQGRPGAVFRRLFMTRSTLWRKCD
AFVQARAVDGPRREDGQMKKSAEEVGEQEAEEEEGLLDRPLWSHVAQRVT
GLLRDGLGNRCVLARPLCGAAGEASEDFQGERGNGCR*
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mRNA from alignment at H-elongata_contig82007:250..2756+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82007.15866.1 ID=mRNA_H-elongata_contig82007.15866.1|Name=mRNA_H-elongata_contig82007.15866.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2507bp|location=Sequence derived from alignment at H-elongata_contig82007:250..2756+ (Himanthalia elongata Himel1 dioecious)
GGAAAGGTTTGGCTTGGGCAGCATGGTATGCGTACGTCGCACGATTCGGT
GGGAGGCTACGAGTGGTCCATGTTGTTGCTGCATCTGGCGCAAGCTCGCA
GGGTCAACTCGAGGATGCCAGCCCTCAGCATCTTCCAGGCCGCGATGAAG
TTCATAGCCGAGGGGGGCATCTCGAGGCGAGATACGATACGATACGGTAC
TGTAGATATTTACTATAACAGTCTTGAGCTCCGTTATATGGTACATTCAT
GTAGTCTGTAATATCTTACTTCAAAGTATACATGTACGTTCGATGCGTAT
CACTTCGAAATGATACGAGAAGATTACGAGAAGATTACGAAATAATTCAG
CTTGTAGATAAAATAAGATAATACCGGTAACCATTACCACAACTCCCCCA
ATATCCCAATGTCCCAATATAAGATGTTTCTTTAAAAACCTATGAATGTA
CCGTAGCATTTTCTCCTTCCAAATTTCCAAGCAGTCTGTCCTCATGACAT
GATATATCTGGTGCCATTCTCCATTCTCAAGCACTTGTTAGGAACTGTGC
TGAAGGAATCGTTTGCCTTTTCCCCTTCTCTCTAGAAGTGGGATTTTATT
TTACAATGTACTACCGGTACTTGCACCAGTACCTTTTTGGTTTTCGCACT
GAAATCGTTTCCACCTTTTTGTCTCTTGAATCGCTGATATATATACTGAA
TATACTATATATATACTGAATATGTATGCTTTTTCAGAGGCTGTCTCACG
GTGAATGCGACGGTGCTGTCGGGGGATGGTGCCGACCAAGACCGAGCCCT
GCCTCTCACTACACACGAACAGGAGAGCTTCAAGGAAGCTTTCCCTGCCG
TCATGGTCGACACCAGCCTGGGTTTCAACGTCTTTGGTGTGTCTTCGTTT
TAAGGGGGAGAAAGGAGGGGCGGGATTGCCTTAATTCGTCCGTCCTTCGA
AAGCTACTCTATATTTTCTGCCCGTGATCACACCGTGACGCTCGCTTTTT
ACACTTTAAAGTAGCTTAAAGGAGTATGTTTTCTTCTCCACACCCTCTTG
TCCCCCGTTCCCCGACACGCACATGCACATGCACACGCAAAACCTCTCTA
TTTGGGAAGCCCGGGTTAGCTCTTCGGCGGTGGAGGAGTTGGAGATGACC
GCGAAGGCCTCGGTGTCGCTGTTGCAAGGGCGTCCAGGAGCGGTGTTCCG
TCGTCTTTTCATGACGCGCTCCACGCTATGGAGGAAGTGCGACGCGTTCG
TGCAGGCAAGGGGTGGGGGATATACGATAGCGCTCAAAGCTAGAGCCGGG
TCGTCTTGAAGCTAACGGCGCATATCTCAGCATGCGTCGATTGAAACACA
GCGTCTTCGCCTCGTGTTTTAAGAGTCAGCTCCCCGCCTCTTTGCCTCAT
GCCGCCTTCTAGTTCCGTCAGGGCGCTTTCTCCGTTGGCTGTTGTTGTTG
CTGCTGCTACTACTGCTGTGCCCAGTGGTGCTTCGTTTTTGCTCTTCTGT
TTGGCATCGTAAATTTTGAGAGAGATATTTGACGTTTTAACGTCCGTGAT
CAATGTGGCCCCTGACCTATCTCGCCCAGGCGATGGAATGGAGAGGGGGA
GGGGGATTTCCTATGCAAAATCCTCATCGTAAATTATAAATTAGAGATTT
TCCGTTTGTTCGTATTTTGTACCCCTGTGTGTGTAATAGTGTGCTGGATT
TTGGGATATGTGTTTATCTATATACATAAGAGTTCATAGAATAAGTTTAT
ATAATAGCAGGAAATAGTAGGGGATATGTATGTTGTAATAGAAAATACGT
AGGAAGAAATGGTGTTTGCAACGCAAGAGCATATTTTTTCTCTCTTTTTT
TCCTCCCTATTTTTTCTGATTTTTTTAGGCTTCCACCCCTTTTTTGTATT
TTGGCTGTTTTTTTCTTCTGTTTTTAACGTTAACAGAAAATGACAAAACA
GATCCAGATACTATGAACCTTAAATCGCCGACTACGGCATAGTATAGTAT
ATGATACGGTAGGGTAGAACTCTACATACAGCACAATGAGACACCGCTAC
ATTTAGGTCAACGACTACTAATAAACAGTATCTTCTATCAGTAGCCAGTA
ACCTTTCTCTGCTTGGGGCAGACGTTTCTCGGTGTTCTTGAACGAACGCC
TCTCTGCTATGCCTCGAGCAGATTCCTCTCATCCCGGCCGAGCGGGGGGC
CGGGGTGGTGGACGCAACGAAGAGCGCCGCCGATCAAGTGCCTGGCAAAC
GTGAAAGCAAAGCTGTCGACGGCCCTAGGAGAGAAGATGGACAAATGAAG
AAATCAGCGGAGGAAGTGGGGGAGCAAGAAGCCGAGGAAGAGGAAGGGCT
GCTGGACAGGCCTCTGTGGAGCCACGTCGCGCAGCGGGTGACCGGGCTAT
TGAGGGATGGCCTTGGGAATCGGTGCGTGCTGGCGAGGCCTCTGTGCGGC
GCCGCCGGAGAGGCATCCGAGGATTTTCAAGGTGAGAGAGGGAATGGTTG
TCGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig82007:250..2756+

>mRNA_H-elongata_contig82007.15866.1 ID=mRNA_H-elongata_contig82007.15866.1|Name=mRNA_H-elongata_contig82007.15866.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1428bp|location=Sequence derived from alignment at H-elongata_contig82007:250..2756+ (Himanthalia elongata Himel1 dioecious)
ATGCGTACGTCGCACGATTCGGTGGGAGGCTACGAGTGGTCCATGTTGTT
GCTGCATCTGGCGCAAGCTCGCAGGGTCAACTCGAGGATGCCAGCCCTCA
GCATCTTCCAGGCCGCGATGAAGTTCATAGCCGAGGGGGGCATCTCGAGG
CGAGATACGATACGATACGATGCGTACGTCGCACGATTCGGTGGGAGGCT
ACGAGTGGTCCATGTTGTTGCTGCATCTGGCGCAAGCTCGCAGGGTCAAC
TCGAGGATGCCAGCCCTCAGCATCTTCCAGGCCGCGATGAAGTTCATAGC
CGAGGGGGGCATCTCGAGGCGAGATACGATACGATACGGCTGTCTCACGG
TGAATGCGACGGTGCTGTCGGGGGATGGTGCCGACCAAGACCGAGCCCTG
CCTCTCACTACACACGAACAGGAGAGCTTCAAGGAAGCTTTCCCTGCCGT
CATGGTCGACACCAGCCTGGGTTTCAACGTCTTTGGCTGTCTCACGGTGA
ATGCGACGGTGCTGTCGGGGGATGGTGCCGACCAAGACCGAGCCCTGCCT
CTCACTACACACGAACAGGAGAGCTTCAAGGAAGCTTTCCCTGCCGTCAT
GGTCGACACCAGCCTGGGTTTCAACGTCTTTGCCCGGGTTAGCTCTTCGG
CGGTGGAGGAGTTGGAGATGACCGCGAAGGCCTCGGTGTCGCTGTTGCAA
GGGCGTCCAGGAGCGGTGTTCCGTCGTCTTTTCATGACGCGCTCCACGCT
ATGGAGGAAGTGCGACGCGTTCGTGCAGGCAAGGGCCCGGGTTAGCTCTT
CGGCGGTGGAGGAGTTGGAGATGACCGCGAAGGCCTCGGTGTCGCTGTTG
CAAGGGCGTCCAGGAGCGGTGTTCCGTCGTCTTTTCATGACGCGCTCCAC
GCTATGGAGGAAGTGCGACGCGTTCGTGCAGGCAAGGGCTGTCGACGGCC
CTAGGAGAGAAGATGGACAAATGAAGAAATCAGCGGAGGAAGTGGGGGAG
CAAGAAGCCGAGGAAGAGGAAGGGCTGCTGGACAGGCCTCTGTGGAGCCA
CGTCGCGCAGCGGGTGACCGGGCTATTGAGGGATGGCCTTGGGAATCGGT
GCGTGCTGGCGAGGCCTCTGTGCGGCGCCGCCGGAGAGGCATCCGAGGAT
TTTCAAGGTGAGAGAGGGAATGGTTGTCGTTGACTGTCGACGGCCCTAGG
AGAGAAGATGGACAAATGAAGAAATCAGCGGAGGAAGTGGGGGAGCAAGA
AGCCGAGGAAGAGGAAGGGCTGCTGGACAGGCCTCTGTGGAGCCACGTCG
CGCAGCGGGTGACCGGGCTATTGAGGGATGGCCTTGGGAATCGGTGCGTG
CTGGCGAGGCCTCTGTGCGGCGCCGCCGGAGAGGCATCCGAGGATTTTCA
AGGTGAGAGAGGGAATGGTTGTCGTTGA
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