mRNA_H-elongata_contig82004.15865.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82004.15865.1
Unique NamemRNA_H-elongata_contig82004.15865.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig82004.15865.1 vs. uniprot
Match: D8LND6_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LND6_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 6.200e-19
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 LCLEYVADFRSQFEKLFPDRRRLFLTAMNEFGVEKLVCSTLRPTLLPYR 147
            LCLEY+ +FR QF+KL+P RRRLFLTA NE+GVEK VC+TLRPTLLPYR
Sbjct:   25 LCLEYINNFRVQFDKLYPCRRRLFLTAPNEYGVEKFVCTTLRPTLLPYR 73
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BLAST of mRNA_H-elongata_contig82004.15865.1 vs. uniprot
Match: A0A7S1XKS5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKS5_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.160e-15
Identity = 31/49 (63.27%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 LCLEYVADFRSQFEKLFPDRRRLFLTAMNEFGVEKLVCSTLRPTLLPYR 147
            LCLEYVA+F+ QF++LFP+R+ L++ A NE GVEK+VC+T+RPT LPY+
Sbjct:   48 LCLEYVANFQDQFKELFPERKDLYIVAPNECGVEKMVCTTVRPTQLPYK 96
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BLAST of mRNA_H-elongata_contig82004.15865.1 vs. uniprot
Match: F0YMP4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMP4_AURAN)

HSP 1 Score: 75.9 bits (185), Expect = 8.170e-15
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 LCLEYVADFRSQFEKLFPDRRRLFLTAMNEFGVEKLVCSTLRPTLLPYR 147
            LCLEYV  FR +F  LFPDRR LFL   NE+G+ K VC+TLRPTLLPYR
Sbjct:   14 LCLEYVRHFREKFTALFPDRRELFLMPRNEWGLPKFVCTTLRPTLLPYR 62
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BLAST of mRNA_H-elongata_contig82004.15865.1 vs. uniprot
Match: A0A0P1B1H8_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B1H8_PLAHL)

HSP 1 Score: 74.3 bits (181), Expect = 2.850e-14
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 LCLEYVADFRSQFEKLFPDRRRLFLTAMNEFGVEKLVCSTLRPTLLPYR 147
            LCLEY+A F+ QFE++FP RR L+L   NE GV K VC+T+RPTLLPYR
Sbjct:   70 LCLEYIAGFQCQFERIFPTRRALYLNPPNENGVPKFVCTTIRPTLLPYR 118
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BLAST of mRNA_H-elongata_contig82004.15865.1 vs. uniprot
Match: A0A421F827_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F827_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.890e-14
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 LCLEYVADFRSQFEKLFPDRRRLFLTAMNEFGVEKLVCSTLRPTLLPYR 147
            LCLEY+A F+ QFE++FP+RR L+L   NE GV K VC+T+RPTLLPYR
Sbjct:   76 LCLEYIAGFQRQFERMFPNRRPLYLHPPNEKGVPKFVCTTIRPTLLPYR 124
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BLAST of mRNA_H-elongata_contig82004.15865.1 vs. uniprot
Match: A0A7S3Y6U6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6U6_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 5.000e-14
Identity = 27/49 (55.10%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 LCLEYVADFRSQFEKLFPDRRRLFLTAMNEFGVEKLVCSTLRPTLLPYR 147
            LCLEYV +FR++F + +P+++ L+LTA NEF VEK +C+T+RPT LP++
Sbjct:    5 LCLEYVKNFRTKFHECYPNKKDLYLTARNEFNVEKFLCTTIRPTQLPFK 53
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BLAST of mRNA_H-elongata_contig82004.15865.1 vs. uniprot
Match: A0A2D4BMI5_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMI5_PYTIN)

HSP 1 Score: 73.6 bits (179), Expect = 5.320e-14
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 LCLEYVADFRSQFEKLFPDRRRLFLTAMNEFGVEKLVCSTLRPTLLPYR 147
            LCLEYVA+F+ QFE+LFP R++L+L   NE G+ K VC+TLRP+LLPYR
Sbjct:   86 LCLEYVANFQRQFEQLFPKRQKLYLFPPNERGIAKFVCTTLRPSLLPYR 134
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BLAST of mRNA_H-elongata_contig82004.15865.1 vs. uniprot
Match: D0MXQ8_PHYIT (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=D0MXQ8_PHYIT)

HSP 1 Score: 73.2 bits (178), Expect = 7.260e-14
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 LCLEYVADFRSQFEKLFPDRRRLFLTAMNEFGVEKLVCSTLRPTLLPYR 147
            LCLEY+A F+ QFE++FP RR L+L   NE GV K VC+T+RPTLLPYR
Sbjct:   76 LCLEYIAGFQRQFERMFPTRRPLYLHPPNEKGVPKFVCTTIRPTLLPYR 124
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BLAST of mRNA_H-elongata_contig82004.15865.1 vs. uniprot
Match: G4YPM3_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YPM3_PHYSP)

HSP 1 Score: 73.2 bits (178), Expect = 7.260e-14
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 LCLEYVADFRSQFEKLFPDRRRLFLTAMNEFGVEKLVCSTLRPTLLPYR 147
            LCLEY+A F+ QFE++FP RR L+L   NE GV K VC+T+RPTLLPYR
Sbjct:   79 LCLEYIAGFQRQFERMFPKRRPLYLHPPNEKGVPKFVCTTIRPTLLPYR 127
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BLAST of mRNA_H-elongata_contig82004.15865.1 vs. uniprot
Match: K3WB99_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WB99_GLOUD)

HSP 1 Score: 72.8 bits (177), Expect = 9.930e-14
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 LCLEYVADFRSQFEKLFPDRRRLFLTAMNEFGVEKLVCSTLRPTLLPYR 147
            LCLEYVA+F+ QFE +FP R+ L+L   NE G  KLVC+TLRPTLLPYR
Sbjct:   78 LCLEYVANFQRQFEYMFPARKPLYLFPPNEHGTPKLVCTTLRPTLLPYR 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82004.15865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LND6_ECTSI6.200e-1977.55Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S1XKS5_9STRA2.160e-1563.27Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
F0YMP4_AURAN8.170e-1569.39Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A0P1B1H8_PLAHL2.850e-1465.31Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A421F827_9STRA3.890e-1465.31Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A7S3Y6U6_HETAK5.000e-1455.10Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2D4BMI5_PYTIN5.320e-1465.31Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
D0MXQ8_PHYIT7.260e-1465.31Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]
G4YPM3_PHYSP7.260e-1465.31Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
K3WB99_GLOUD9.930e-1467.35Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82004contigH-elongata_contig82004:279..428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1e-14
Seed eggNOG ortholog2880.D8LND6
Preferred nameCCDC135
KEGG koko:K18402
GOsGO:0000003,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005929,GO:0006928,GO:0007320,GO:0007618,GO:0007620,GO:0008150,GO:0009987,GO:0019953,GO:0022414,GO:0030317,GO:0031514,GO:0032501,GO:0032504,GO:0040011,GO:0042995,GO:0043226,GO:0044424,GO:0044464,GO:0044703,GO:0044706,GO:0046692,GO:0046693,GO:0048609,GO:0048870,GO:0051179,GO:0051674,GO:0051704,GO:0097722,GO:0120025
EggNOG free text desc.multicellular organismal reproductive process
EggNOG OGs28JA6@1,2QRNZ@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_004240.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931227.734741-CDS-H-elongata_contig82004:278..4281622931227.734741-CDS-H-elongata_contig82004:278..428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82004 279..428 -
1691679750.441796-CDS-H-elongata_contig82004:278..4281691679750.441796-CDS-H-elongata_contig82004:278..428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82004 279..428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82004.15865.1prot_H-elongata_contig82004.15865.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82004 279..428 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82004.15865.1

>prot_H-elongata_contig82004.15865.1 ID=prot_H-elongata_contig82004.15865.1|Name=mRNA_H-elongata_contig82004.15865.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
LCLEYVADFRSQFEKLFPDRRRLFLTAMNEFGVEKLVCSTLRPTLLPYR*
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mRNA from alignment at H-elongata_contig82004:279..428-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82004.15865.1 ID=mRNA_H-elongata_contig82004.15865.1|Name=mRNA_H-elongata_contig82004.15865.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig82004:279..428- (Himanthalia elongata Himel1 dioecious)
CTTTGCCTGGAGTACGTCGCCGACTTTCGATCGCAGTTCGAGAAACTATT
CCCTGACAGGCGCCGACTTTTCCTCACGGCAATGAACGAGTTTGGTGTGG
AGAAATTGGTGTGCTCCACTCTTCGACCAACGCTCCTTCCGTATCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig82004:279..428-

>mRNA_H-elongata_contig82004.15865.1 ID=mRNA_H-elongata_contig82004.15865.1|Name=mRNA_H-elongata_contig82004.15865.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig82004:279..428- (Himanthalia elongata Himel1 dioecious)
CTTTGCCTGGAGTACGTCGCCGACTTTCGATCGCAGTTCGAGAAACTATT
CCCTGACAGGCGCCGACTTTTCCTCACGGCAATGAACGAGTTTGGTGTGG
AGAAATTGGTGTGCTCCACTCTTCGACCAACGCTCCTTCCGTATCGGTGA
CTTTGCCTGGAGTACGTCGCCGACTTTCGATCGCAGTTCGAGAAACTATT
CCCTGACAGGCGCCGACTTTTCCTCACGGCAATGAACGAGTTTGGTGTGG
AGAAATTGGTGTGCTCCACTCTTCGACCAACGCTCCTTCCGTATCGGTGA
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