mRNA_H-elongata_contig81907.15858.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81907.15858.1
Unique NamemRNA_H-elongata_contig81907.15858.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig81907.15858.1 vs. uniprot
Match: D7FUV6_ECTSI (Predicted ATPase of the ABC class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUV6_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 7.660e-57
Identity = 89/100 (89.00%), Postives = 95/100 (95.00%), Query Frame = 1
Query:    4 VRAEDGRCVNTVDISPFIDNLPFGKSTKGFTTPDASGSTSQATNIIEALEAEKEPITPFINKVRALYDTLKVSSILVIGGCGDYFEVADTVIMMDCYSPK 303
            VRAEDGRCVN VDI+PFIDNLPFGKST  FTTPDASGSTSQATNI+EALEAEKEPITPFI++VRALY+T+ VSSILVIGGCGDYFEVADTVIMMDCY PK
Sbjct:   17 VRAEDGRCVNCVDITPFIDNLPFGKSTDQFTTPDASGSTSQATNIVEALEAEKEPITPFISRVRALYETMSVSSILVIGGCGDYFEVADTVIMMDCYVPK 116          
BLAST of mRNA_H-elongata_contig81907.15858.1 vs. uniprot
Match: A0A6H5JP10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP10_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 2.060e-47
Identity = 89/130 (68.46%), Postives = 96/130 (73.85%), Query Frame = 1
Query:    1 QVRAEDGRCVNTVDISPFIDNLPFGKSTKGFTTPDASGSTSQATNIIEALEA-----------------------------EKEPITPFINKVRALYDTLKVSSILVIGGCGDYFEVADTVIMMDCYSPK 303
            +VRAEDGRCVN VDI+PFIDNLPFGKST  FTTPDASGSTSQATNI+EALEA                             EKEPITPFI++VRALY+T+ VSSILVIGGCGDYFEVADTVIMMDCY PK
Sbjct:  452 KVRAEDGRCVNCVDITPFIDNLPFGKSTDQFTTPDASGSTSQATNIVEALEAGCTTLLVDEDTCATNFMIRDVRMQMLVAKEKEPITPFISRVRALYETMSVSSILVIGGCGDYFEVADTVIMMDCYVPK 581          
BLAST of mRNA_H-elongata_contig81907.15858.1 vs. uniprot
Match: A0A6U1P3D5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A6U1P3D5_CYCTE)

HSP 1 Score: 134 bits (338), Expect = 4.690e-37
Identity = 73/122 (59.84%), Postives = 81/122 (66.39%), Query Frame = 1
Query:   19 GRCVNTVDISPFIDNLPFGKSTKGFTTPDASGSTSQATNIIEALEA-----------------------------EKEPITPFINKVRALYDTLKVSSILVIGGCGDYFEVADTVIMMDCYS 297
            GR V  VDISPFI NLPFGK T  F+TPDASGSTSQA+NI+EALEA                             EKEPITPF+ KVRALY+  +VSSILVIGG GDYF VADTV+MMDCY+
Sbjct:    1 GRSVTAVDISPFIANLPFGKDTTCFSTPDASGSTSQASNIVEALEAGADLLLVDEDTCATNFMIRDEKMIQLVAAEKEPITPFVQKVRALYEERQVSSILVIGGSGDYFSVADTVVMMDCYT 122          
BLAST of mRNA_H-elongata_contig81907.15858.1 vs. uniprot
Match: A0A7S2ZE49_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZE49_9RHOD)

HSP 1 Score: 140 bits (353), Expect = 5.570e-37
Identity = 72/129 (55.81%), Postives = 89/129 (68.99%), Query Frame = 1
Query:    1 QVRAEDGRCVNTVDISPFIDNLPFGKSTKGFTTPDASGSTSQATNIIEALEA-----------------------------EKEPITPFINKVRALYDTLKVSSILVIGGCGDYFEVADTVIMMDCYSP 300
            ++RAEDGR V +VDISPFI+NLPF KSTK F+TPDASGSTSQA NIIEA++A                             +KEPITPFI+++R +Y+ + +S+ILVIGG GDYF+VAD VIMMDCY P
Sbjct:  311 KIRAEDGRSVTSVDISPFINNLPFQKSTKSFSTPDASGSTSQAANIIEAVQAGTKCLLVDEDTCATNFMIRDARMQELVAPDKEPITPFISRIRTMYEHMGISTILVIGGAGDYFDVADHVIMMDCYKP 439          
BLAST of mRNA_H-elongata_contig81907.15858.1 vs. uniprot
Match: A0A6T7JH83_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7JH83_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.000e-36
Identity = 71/128 (55.47%), Postives = 85/128 (66.41%), Query Frame = 1
Query:    1 QVRAEDGRCVNTVDISPFIDNLPFGKSTKGFTTPDASGSTSQATNIIEALEA-----------------------------EKEPITPFINKVRALYDTLKVSSILVIGGCGDYFEVADTVIMMDCYS 297
            ++RAEDGR V++VDISPFI NLPFGK T  FTT DASGSTSQA+NI+EA+E                              +KEPITPF+ KVR LY+   +SSILVIGGCGDYF+VAD V+MMD Y+
Sbjct:   50 KIRAEDGRAVHSVDISPFITNLPFGKGTHCFTTADASGSTSQASNIVEAIEVGAEALIVDEDTCATNFMIRDDKMMELVAKDKEPITPFVRKVRPLYEEKGISSILVIGGCGDYFDVADRVVMMDSYA 177          
BLAST of mRNA_H-elongata_contig81907.15858.1 vs. uniprot
Match: A0A2R5G7R3_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G7R3_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.290e-36
Identity = 77/129 (59.69%), Postives = 88/129 (68.22%), Query Frame = 1
Query:    1 QVRAEDGRCVNTVDISPFIDNLPFGKSTKGFTTPDASGSTSQATNIIEALEA-----------------------------EKEPITPFINKVRALYDTLKVSSILVIGGCGDYFEVADTVIMMDCYSP 300
            +VRAEDGR V++V+ISPFI NLPFG+ T  F+T DASGSTSQATNI+EALEA                             +KEPI PFI+KVRALYDT  VS+ILVIGG GDYFEVADTV+MMD Y P
Sbjct:  374 KVRAEDGRNVSSVNISPFISNLPFGRDTTCFSTSDASGSTSQATNILEALEAGADTLLIDEDTCATNFMIRDERMMELVSNDKEPIKPFISKVRALYDTHGVSTILVIGGAGDYFEVADTVVMMDSYKP 502          
BLAST of mRNA_H-elongata_contig81907.15858.1 vs. uniprot
Match: A0A2B4RUN5_STYPI (Uncharacterized protein n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4RUN5_STYPI)

HSP 1 Score: 138 bits (348), Expect = 3.640e-36
Identity = 75/129 (58.14%), Postives = 84/129 (65.12%), Query Frame = 1
Query:    4 VRAEDGRCVNTVDISPFIDNLPFGKSTKGFTTPDASGSTSQATNIIEALE-----------------------------AEKEPITPFINKVRALYDTLKVSSILVIGGCGDYFEVADTVIMMDCYSPK 303
            +RAEDGR +  VDI PFI+NLPFG+ T  F T DASGSTSQA NI+EALE                             AEKEPITPFI+KVR+LYD   VSSILVIGG GDYF+VAD VIMMDCYS +
Sbjct:  353 IRAEDGRSIEKVDIRPFINNLPFGRDTSRFCTQDASGSTSQAANIVEALETGTKCLLIDEDTSATNFMIRDARMQKLVAAEKEPITPFISKVRSLYDDFGVSSILVIGGSGDYFQVADHVIMMDCYSSR 481          
BLAST of mRNA_H-elongata_contig81907.15858.1 vs. uniprot
Match: A0A7S4WCI1_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WCI1_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.170e-35
Identity = 71/128 (55.47%), Postives = 87/128 (67.97%), Query Frame = 1
Query:    1 QVRAEDGRCVNTVDISPFIDNLPFGKSTKGFTTPDASGSTSQATNIIEALEA-----------------------------EKEPITPFINKVRALYDTLKVSSILVIGGCGDYFEVADTVIMMDCYS 297
            ++RAEDGRCV+ V+ISPFI NLPFGK+T+ F++ DASGSTSQA+NIIEA+E                              +KEPITPF+ KVR+LY    VSSILVIGG GDYF+VAD V+MMDCY+
Sbjct:  121 KIRAEDGRCVSAVNISPFIGNLPFGKTTECFSSMDASGSTSQASNIIEAIEVGATALLVDEDTCATNFMIRDDKMMELVAKDKEPITPFVRKVRSLYTEKGVSSILVIGGSGDYFDVADHVVMMDCYT 248          
BLAST of mRNA_H-elongata_contig81907.15858.1 vs. uniprot
Match: UPI001CF4462B (uncharacterized protein LOC114971207 isoform X1 n=4 Tax=Acropora TaxID=6127 RepID=UPI001CF4462B)

HSP 1 Score: 137 bits (344), Expect = 1.380e-35
Identity = 75/129 (58.14%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    4 VRAEDGRCVNTVDISPFIDNLPFGKSTKGFTTPDASGSTSQATNIIEALE-----------------------------AEKEPITPFINKVRALYDTLKVSSILVIGGCGDYFEVADTVIMMDCYSPK 303
            VRAEDGR +  VDI PFI+NLPFG+ T  F+T DASGSTSQA NIIEALE                             AEKEPITPFI+KVR+L++   VSSILVIGG GDYF+VAD VIMMDCYS +
Sbjct:  362 VRAEDGRSIEKVDIRPFINNLPFGRDTSRFSTQDASGSTSQAANIIEALETGAKSLLIDEDTSATNFMIRDSRMQKLVAAEKEPITPFISKVRSLFEDFGVSSILVIGGSGDYFQVADHVIMMDCYSAR 490          
BLAST of mRNA_H-elongata_contig81907.15858.1 vs. uniprot
Match: UPI0009E60759 (uncharacterized protein LOC110050552 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E60759)

HSP 1 Score: 135 bits (340), Expect = 2.110e-35
Identity = 73/127 (57.48%), Postives = 83/127 (65.35%), Query Frame = 1
Query:    4 VRAEDGRCVNTVDISPFIDNLPFGKSTKGFTTPDASGSTSQATNIIEALEA-----------------------------EKEPITPFINKVRALYDTLKVSSILVIGGCGDYFEVADTVIMMDCYS 297
            +RAEDGR +  VDI PFI+NLPFG+ T  F+T DASGSTSQA NIIEALE                              EKEPITPFI+KVR+LY+   VSSILVIGG GDYF+VAD V+MMDCYS
Sbjct:  247 IRAEDGRSIEKVDIRPFINNLPFGRDTSRFSTQDASGSTSQAANIIEALETGSKCLLIDEDTSATNFMIRDARMQQLVATEKEPITPFISKVRSLYEDFVVSSILVIGGSGDYFQVADHVVMMDCYS 373          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81907.15858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUV6_ECTSI7.660e-5789.00Predicted ATPase of the ABC class n=1 Tax=Ectocarp... [more]
A0A6H5JP10_9PHAE2.060e-4768.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6U1P3D5_CYCTE4.690e-3759.84Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2ZE49_9RHOD5.570e-3755.81Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A6T7JH83_9STRA1.000e-3655.47Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A2R5G7R3_9STRA2.290e-3659.69Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
A0A2B4RUN5_STYPI3.640e-3658.14Uncharacterized protein n=3 Tax=Pocilloporidae Tax... [more]
A0A7S4WCI1_9STRA1.170e-3555.47Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
UPI001CF4462B1.380e-3558.14uncharacterized protein LOC114971207 isoform X1 n=... [more]
UPI0009E607592.110e-3557.48uncharacterized protein LOC110050552 n=1 Tax=Orbic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81907contigH-elongata_contig81907:483..2213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.5
Seed ortholog evalue2.5e-44
Seed eggNOG ortholog2880.D7FUV6
EggNOG free text desc.Predicted ATPase of the ABC class
EggNOG OGs2QT9W@2759,COG3044@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPredicted ATPase of the ABC class
Ec32 orthologEc-26_004360.1
Exons2
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931226.9351394-CDS-H-elongata_contig81907:482..6291622931226.9351394-CDS-H-elongata_contig81907:482..629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81907 483..629 -
1691679750.081136-CDS-H-elongata_contig81907:482..6291691679750.081136-CDS-H-elongata_contig81907:482..629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81907 483..629 -
1622931226.9534853-CDS-H-elongata_contig81907:2057..22131622931226.9534853-CDS-H-elongata_contig81907:2057..2213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81907 2058..2213 -
1691679750.0926988-CDS-H-elongata_contig81907:2057..22131691679750.0926988-CDS-H-elongata_contig81907:2057..2213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81907 2058..2213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81907.15858.1prot_H-elongata_contig81907.15858.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81907 483..2213 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81907.15858.1

>prot_H-elongata_contig81907.15858.1 ID=prot_H-elongata_contig81907.15858.1|Name=mRNA_H-elongata_contig81907.15858.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
QVRAEDGRCVNTVDISPFIDNLPFGKSTKGFTTPDASGSTSQATNIIEAL
EAEKEPITPFINKVRALYDTLKVSSILVIGGCGDYFEVADTVIMMDCYSP
K
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mRNA from alignment at H-elongata_contig81907:483..2213-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81907.15858.1 ID=mRNA_H-elongata_contig81907.15858.1|Name=mRNA_H-elongata_contig81907.15858.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1731bp|location=Sequence derived from alignment at H-elongata_contig81907:483..2213- (Himanthalia elongata Himel1 dioecious)
CAGGTGAGGGCAGAGGACGGACGTTGCGTGAACACCGTGGACATCAGCCC CTTCATTGACAACCTCCCGTTCGGAAAGTCAACGAAAGGCTTCACCACGC CCGACGCTTCCGGTTCTACCAGCCAGGCGACGAATATCATCGAGGCTCTT GAGGCGGTGAGGTCCCGTCGTGCGTCGTGATCAGCCTTCGTCGAGAACGG GGGGGTATCCTGCCACCCGATAAATTACTCAGTATACATTTATTTTTGTA TTTCAGCAATCATGGGGTAGACGCTGCCACCAACCCCCCGAGAGATCTTC GCTGCTCGTGGTAACGTGACTTAACGGTGGCCCAGGGGTTAGCCTGAAAA CGAACAAGGAGTGGGTTCTGGGTTCGAGTCCCACCTTTCGCGTTTTTTGT GAGGGGTCAGCCTAGGAATGTTTGGAGCTTGCGAGGGTTCAACGCTTCGG CTGCGGAGGTGTTGAACCAGCGAACTCCATAGTTTCTGTGTTTAGCAAGG CGAGTGGGGCTCCTTACGAACAAAGGCGTTTTCAACCGACTCAACGATCG TCAGAAAAAGGCGAAAGATGGCTCGTTTTCCCCGTGTGTCTTTTCGTCTG GTTTCGTTTCGTTACGTTTCGTCTGTTTTTTTCTTTCGTTCCGCTTCGTG TTGTTCCTCTCTGTGGGTGCGGGGGGTGTCTTCTTAAAACTATTTTGTTT GTTTTTAACGCGAAATGAAACGCGCAACTCAGGGCTGCACGACTCTTCTC GTCGACGAGGACACGTGCGCGACCAACTTCATGATCAGGGACCTCAGAAT GCAAATGTGCGAGGTAGAGGGATAAGGGGGGTTGGGAGGTGGGAGGGGTG TTAACCTTTTTTTGCTGTCGGCAACCCTCATGTGGTGTCTTCTTGTGTGT GTCGTCTTCGACACTAAAAACCTATACTTCATACATTGTAGATGTTCGAT TTGGAGTCGCCGCGAGTTATTGGCTTCCCCTTCTTCTTGACGTATTTACG CGCACACGCCCACGTGTCAATACGTAGGAACACACACATGGTTATTTCGT TTCGATACACGACGATGTTGTCTTTGGAAGAAGAAAAAAGATGATAATGA GGGATTAGGCGTTTCAAGGCCAAGGACGAGGATTAGGCTTAACCCCTGGC TGTTTCGGAAAAAATGTATCAAGTATCGAGGGAGTTCCAAACATTGTTGG CGGATAAGTGGACGGGATGAGAAAGGGGGGTGTATCACTAGCTTTGCTCC AGGAGAAGAGAAGCGCGTGTACTTTTTTTACTTCTAATTCCCTGCAGCGA ACTGGGCTTCTTCCTTTCGGTTTGGGTCTTACTGTGTACGTTGGCGTTTC ATGCCCCCCCACCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNN NNTTTTTTTTTCTAATCCCCCCCCGGGACCGGGGCTTTTTTTTTTTGTTT TGGGTTTTCGTTGTGAGGTGGGGGTTTTTTTGCCCCCCCCCCCCCCCCCC CCCCCGCGCGCGCAACCTCCCATGTAAAAAACGCCTTCACCCTGTGCACC GTCCCCGTTTCCTGAGGTCAGGCTCGTGGCGAAGGAGAAGGAACCCATCA CGCCTTTCATCAACAAGGTCCGCGCGCTGTACGACACCCTCAAGGTCTCC TCCATATTGGTGATCGGCGGCTGCGGAGACTATTTCGAGGTGGCGGATAC CGTGATCATGATGGACTGCTACTCTCCCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig81907:483..2213-

>mRNA_H-elongata_contig81907.15858.1 ID=mRNA_H-elongata_contig81907.15858.1|Name=mRNA_H-elongata_contig81907.15858.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig81907:483..2213- (Himanthalia elongata Himel1 dioecious)
CAGGTGAGGGCAGAGGACGGACGTTGCGTGAACACCGTGGACATCAGCCC
CTTCATTGACAACCTCCCGTTCGGAAAGTCAACGAAAGGCTTCACCACGC
CCGACGCTTCCGGTTCTACCAGCCAGGCGACGAATATCATCGAGGCTCTT
GAGGCGCAGGTGAGGGCAGAGGACGGACGTTGCGTGAACACCGTGGACAT
CAGCCCCTTCATTGACAACCTCCCGTTCGGAAAGTCAACGAAAGGCTTCA
CCACGCCCGACGCTTCCGGTTCTACCAGCCAGGCGACGAATATCATCGAG
GCTCTTGAGGCGGAGAAGGAACCCATCACGCCTTTCATCAACAAGGTCCG
CGCGCTGTACGACACCCTCAAGGTCTCCTCCATATTGGTGATCGGCGGCT
GCGGAGACTATTTCGAGGTGGCGGATACCGTGATCATGATGGACTGCTAC
TCTCCCAAGGAGAAGGAACCCATCACGCCTTTCATCAACAAGGTCCGCGC
GCTGTACGACACCCTCAAGGTCTCCTCCATATTGGTGATCGGCGGCTGCG
GAGACTATTTCGAGGTGGCGGATACCGTGATCATGATGGACTGCTACTCT
CCCAAG
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