mRNA_H-elongata_contig81778.15844.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81778.15844.1
Unique NamemRNA_H-elongata_contig81778.15844.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig81778.15844.1 vs. uniprot
Match: D7FKS2_ECTSI (50S ribosomal protein l19-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKS2_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.830e-26
Identity = 47/57 (82.46%), Postives = 55/57 (96.49%), Query Frame = 1
Query:    1 DSTILLRDVVNGNPVETHIPLYSPLVKSIEVMETGFIYQGKLKGKRVRPARIYYIRN 171
            DS+ILLRDV+NGNPVE HIPL+SPL++S+EVMET FIYQGKL+GKRVRPARIYYIR+
Sbjct:  149 DSSILLRDVINGNPVEHHIPLFSPLIQSVEVMETAFIYQGKLRGKRVRPARIYYIRD 205          
BLAST of mRNA_H-elongata_contig81778.15844.1 vs. uniprot
Match: A0A8J9SNI4_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SNI4_PHATR)

HSP 1 Score: 67.4 bits (163), Expect = 2.450e-13
Identity = 30/57 (52.63%), Postives = 46/57 (80.70%), Query Frame = 1
Query:    1 DSTILLRDVVNGNPVETHIPLYSPLVKSIEVMETGFIYQGKLKGKRVRPARIYYIRN 171
            D+T+LLRDVV G P+E  +PL+SPL++S++V+E  FIY+GK K KR   A++Y++R+
Sbjct:   37 DTTVLLRDVVFGEPIERRVPLHSPLLRSLKVLEENFIYKGKRKVKR---AKLYFLRD 90          
BLAST of mRNA_H-elongata_contig81778.15844.1 vs. uniprot
Match: A0A835ZJ13_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ13_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.200e-13
Identity = 30/56 (53.57%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    4 STILLRDVVNGNPVETHIPLYSPLVKSIEVMETGFIYQGKLKGKRVRPARIYYIRN 171
            S+ ++RDV+    +E  +PLYSPL+KSI V++   IY+GK +GKRVRP++IYY+RN
Sbjct:  120 SSFIVRDVLYDEAIERRVPLYSPLLKSITVLKRRAIYEGKQEGKRVRPSKIYYLRN 175          
BLAST of mRNA_H-elongata_contig81778.15844.1 vs. uniprot
Match: K0SBD7_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBD7_THAOC)

HSP 1 Score: 69.7 bits (169), Expect = 9.020e-13
Identity = 30/57 (52.63%), Postives = 47/57 (82.46%), Query Frame = 1
Query:    1 DSTILLRDVVNGNPVETHIPLYSPLVKSIEVMETGFIYQGKLKGKRVRPARIYYIRN 171
            D++I LRDV+ G PVE  + L+SPLVKS++V+E GF+ +G+ KG+RV+ A++YY+R+
Sbjct:  214 DTSINLRDVLFGEPVERKVKLHSPLVKSLKVLEEGFVNRGRRKGRRVKRAKLYYLRD 270          
BLAST of mRNA_H-elongata_contig81778.15844.1 vs. uniprot
Match: B8BTE2_THAPS (50S ribosomal protein l19-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTE2_THAPS)

HSP 1 Score: 67.8 bits (164), Expect = 1.110e-12
Identity = 30/57 (52.63%), Postives = 46/57 (80.70%), Query Frame = 1
Query:    1 DSTILLRDVVNGNPVETHIPLYSPLVKSIEVMETGFIYQGKLKGKRVRPARIYYIRN 171
            D++I L+DV+ G  VE  I L+SP+VK+++V+E GF+ +GK KGKRVR A++YY+R+
Sbjct:   85 DTSIYLKDVLFGEHVERKIKLHSPMVKTLKVLEEGFVNRGKRKGKRVRRAKLYYLRD 141          
BLAST of mRNA_H-elongata_contig81778.15844.1 vs. uniprot
Match: A0A7S2P9J5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P9J5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.080e-11
Identity = 28/57 (49.12%), Postives = 45/57 (78.95%), Query Frame = 1
Query:    1 DSTILLRDVVNGNPVETHIPLYSPLVKSIEVMETGFIYQGKLKGKRVRPARIYYIRN 171
            D+ I L+DV+ G  VE  + L+SP+VKS++V+E GF+ +GK KG+RV+ A++YY+R+
Sbjct:   99 DTGIYLKDVLFGEHVERKVKLHSPMVKSLKVLEEGFVNRGKKKGRRVKRAKLYYLRD 155          
BLAST of mRNA_H-elongata_contig81778.15844.1 vs. uniprot
Match: A0A7S1GN95_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GN95_CYCTE)

HSP 1 Score: 64.7 bits (156), Expect = 2.050e-11
Identity = 29/55 (52.73%), Postives = 44/55 (80.00%), Query Frame = 1
Query:    4 STILLRDVVNGNPVETHIPLYSPLVKSIEVMETGFIYQGKLKGKRVRPARIYYIR 168
            S++++RDVV G PVE  IPLYSP+VKS++++E  F+++GK K KR   A++YY+R
Sbjct:  122 SSLIVRDVVFGEPVEWKIPLYSPMVKSLKILERNFVFKGKRKVKR---AKLYYLR 173          
BLAST of mRNA_H-elongata_contig81778.15844.1 vs. uniprot
Match: A0A7R9UET9_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UET9_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.630e-11
Identity = 27/57 (47.37%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    1 DSTILLRDVVNGNPVETHIPLYSPLVKSIEVMETGFIYQGKLKGKRVRPARIYYIRN 171
            D +IL+R VV G+  E  +PL+SPL+K++E++E   I++GK  G+RVR +++YY+RN
Sbjct:  138 DESILVRGVVKGDCFEVRVPLWSPLLKAVEILEPRCIHKGKKAGRRVRRSKLYYLRN 194          
BLAST of mRNA_H-elongata_contig81778.15844.1 vs. uniprot
Match: A0A1E7FEL1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEL1_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.980e-10
Identity = 25/56 (44.64%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    4 STILLRDVVNGNPVETHIPLYSPLVKSIEVMETGFIYQGKLKGKRVRPARIYYIRN 171
            S+++LRDVV G P+E  IP YSP++K  +++E  FI++GK   K+V+ +++YY R+
Sbjct:   40 SSLILRDVVYGLPIERRIPFYSPMIKEAKILERNFIFKGK---KKVKRSKLYYFRD 92          
BLAST of mRNA_H-elongata_contig81778.15844.1 vs. uniprot
Match: A0A7S2ID41_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2ID41_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.290e-10
Identity = 24/56 (42.86%), Postives = 45/56 (80.36%), Query Frame = 1
Query:    4 STILLRDVVNGNPVETHIPLYSPLVKSIEVMETGFIYQGKLKGKRVRPARIYYIRN 171
            S++ +RDV+ G P++  +PL+SPL+KS++V+E  F+++GK   K+V+ A++YY+R+
Sbjct:   82 SSVQIRDVMYGEPIDRQVPLHSPLLKSLKVLEKNFVHKGK---KKVKRAKLYYLRD 134          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81778.15844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7FKS2_ECTSI1.830e-2682.4650S ribosomal protein l19-like protein n=2 Tax=Ect... [more]
A0A8J9SNI4_PHATR2.450e-1352.63Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A835ZJ13_9STRA3.200e-1353.57Translation protein SH3-like domain-containing pro... [more]
K0SBD7_THAOC9.020e-1352.63Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B8BTE2_THAPS1.110e-1252.6350S ribosomal protein l19-like protein n=1 Tax=Tha... [more]
A0A7S2P9J5_9STRA1.080e-1149.12Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1GN95_CYCTE2.050e-1152.73Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7R9UET9_9STRA2.630e-1147.37Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A1E7FEL1_9STRA1.980e-1044.64Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]
A0A7S2ID41_9STRA4.290e-1042.86Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81778contigH-elongata_contig81778:2066..2520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue1.1e-20
Seed eggNOG ortholog2880.D7FKS2
EggNOG free text desc.Ribosomal protein L19
EggNOG OGs2S8N4@2759,COG0335@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog description50S ribosomal protein L19
Ec32 orthologEc-21_001910.1
Exons2
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931225.4834836-CDS-H-elongata_contig81778:2065..21461622931225.4834836-CDS-H-elongata_contig81778:2065..2146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81778 2066..2146 -
1691679749.4999974-CDS-H-elongata_contig81778:2065..21461691679749.4999974-CDS-H-elongata_contig81778:2065..2146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81778 2066..2146 -
1622931225.4981413-CDS-H-elongata_contig81778:2430..25201622931225.4981413-CDS-H-elongata_contig81778:2430..2520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81778 2431..2520 -
1691679749.5125134-CDS-H-elongata_contig81778:2430..25201691679749.5125134-CDS-H-elongata_contig81778:2430..2520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81778 2431..2520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81778.15844.1prot_H-elongata_contig81778.15844.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81778 2066..2520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81778.15844.1

>prot_H-elongata_contig81778.15844.1 ID=prot_H-elongata_contig81778.15844.1|Name=mRNA_H-elongata_contig81778.15844.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
DSTILLRDVVNGNPVETHIPLYSPLVKSIEVMETGFIYQGKLKGKRVRPA
RIYYIRN
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mRNA from alignment at H-elongata_contig81778:2066..2520-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81778.15844.1 ID=mRNA_H-elongata_contig81778.15844.1|Name=mRNA_H-elongata_contig81778.15844.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=455bp|location=Sequence derived from alignment at H-elongata_contig81778:2066..2520- (Himanthalia elongata Himel1 dioecious)
GATTCAACAATCTTGCTGAGGGACGTCGTGAACGGCAACCCCGTCGAAAC TCATATTCCCCTCTACAGCCCGCTTGTTAAATCGATCGAGGTATAGTGCA CTAGCCTCCTGCAGGGGTGTAAGGATATACGACTCACCCAGCTGATTTCA ATCTCGCTCACATCCGATTATTTTGGCCCCAGGCACCTTGTCGTCGAAAC AACATATTCTTCCCGCCCGCCCGGGTAGTTGTATGCATTATGTGCACCAA CAAACCGTTGTGCCAGCCACAAACTTACCCGCTGTGCTATTTCTTCACGC TTTTCCTAATGTACATGGTGAGACCTCCAACACGTTTACGCGCCGTACGG ACTTTAATATATCAATATAATCAGGTGATGGAAACAGGGTTCATTTACCA AGGAAAGCTGAAGGGCAAGCGCGTGCGACCGGCGCGGATCTACTACATCC GCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig81778:2066..2520-

>mRNA_H-elongata_contig81778.15844.1 ID=mRNA_H-elongata_contig81778.15844.1|Name=mRNA_H-elongata_contig81778.15844.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig81778:2066..2520- (Himanthalia elongata Himel1 dioecious)
GATTCAACAATCTTGCTGAGGGACGTCGTGAACGGCAACCCCGTCGAAAC
TCATATTCCCCTCTACAGCCCGCTTGTTAAATCGATCGAGGATTCAACAA
TCTTGCTGAGGGACGTCGTGAACGGCAACCCCGTCGAAACTCATATTCCC
CTCTACAGCCCGCTTGTTAAATCGATCGAGGTGATGGAAACAGGGTTCAT
TTACCAAGGAAAGCTGAAGGGCAAGCGCGTGCGACCGGCGCGGATCTACT
ACATCCGCAACGTGATGGAAACAGGGTTCATTTACCAAGGAAAGCTGAAG
GGCAAGCGCGTGCGACCGGCGCGGATCTACTACATCCGCAAC
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