prot_H-elongata_contig81694.15834.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig81694.15834.1
Unique Name	prot_H-elongata_contig81694.15834.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	119

Homology

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BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 8.640e-23
Identity = 57/118 (48.31%), Postives = 68/118 (57.63%), Query Frame = 0

Query:    5 DDFTRFKMVRFLKHKSDATNALRNIINDYFASE-SLKIGVIRTDSGGEWHGQFMSFLSKLGIKCDSTPPYTPRYNGVVERALGLLRDKTVALLRGVMERKSDR-----LWAEAMAYAC 116
            DD TR+  V FLKHKSDA  A    + DY A     ++ V RTD GGE+ GQF     + GIK + TPP TP+YNGV ERALGLL D  +A      E   D      LWAEA++ AC
Sbjct:   17 DDCTRWTRVFFLKHKSDAAAAFEPYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCAC 134

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BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.330e-22
Identity = 57/118 (48.31%), Postives = 68/118 (57.63%), Query Frame = 0

Query:    5 DDFTRFKMVRFLKHKSDATNALRNIINDYFASE-SLKIGVIRTDSGGEWHGQFMSFLSKLGIKCDSTPPYTPRYNGVVERALGLLRDKTVALLRGVMERKSDR-----LWAEAMAYAC 116
            DD TR+  V FLKHKSDA  A    + DY A     ++ V RTD GGE+ GQF     + GIK + TPP TP+YNGV ERALGLL D  +A      E   D      LWAEA++ AC
Sbjct:  221 DDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCAC 338

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BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 5.920e-21
Identity = 52/118 (44.07%), Postives = 68/118 (57.63%), Query Frame = 0

Query:    5 DDFTRFKMVRFLKHKSDATNALRNIINDYFASE-SLKIGVIRTDSGGEWHGQFMSFLSKLGIKCDSTPPYTPRYNGVVERALGLLRDKTVALLRGVMERKSDR-----LWAEAMAYAC 116
            DDF+R+  V FLKHKSDA       + DY   E   ++ + RTD GGE+ GQF     + GIK + TPP+TP+YN V ERALGL+ D  +A      +   D      LWAEA++ AC
Sbjct:  242 DDFSRWTRVFFLKHKSDAAVGFEKFLVDYRTKEVPCEVYITRTDDGGEFQGQFAEVFRRHGIKQEFTPPHTPKYNDVAERALGLITDAALASRIQATQPFPDAPNHPGLWAEAISCAC 359

[Close]

BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.650e-20
Identity = 52/118 (44.07%), Postives = 68/118 (57.63%), Query Frame = 0

Query:    5 DDFTRFKMVRFLKHKSDATNALRNIINDYFASE-SLKIGVIRTDSGGEWHGQFMSFLSKLGIKCDSTPPYTPRYNGVVERALGLLRDKTVALLRGVMERKSDR-----LWAEAMAYAC 116
            DDF+R+  V FLKHKSDA       + DY       ++ + RTD GGE+ GQF     + GIK + TPP+TP+YNGV ERALGL+ D  +A      +   D      LWAEA++ AC
Sbjct:   48 DDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCAC 165

[Close]

BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 4.420e-20
Identity = 56/127 (44.09%), Postives = 79/127 (62.20%), Query Frame = 0

Query:    1 MLCIDDFTRFKMVRFLKHKSDATNALRNIINDYFAS--ESLKIGVIRTDSGGEWHG-QFMSFLSKLGIKCDSTPPYTPRYNGVVERALGLLRDKTVA-------LLRGVMERKSDRLWAEAMAYACD 117
            M+  DDFTR   + FLKHKSDA  A R+ +    A    SL + ++R+D+GGE+ G +F S  ++L IK + TP Y+P+YNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+
Sbjct:  257 MIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSL-VEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACE 382

[Close]

BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 4.430e-20
Identity = 56/127 (44.09%), Postives = 79/127 (62.20%), Query Frame = 0

Query:    1 MLCIDDFTRFKMVRFLKHKSDATNALRNIINDYFAS--ESLKIGVIRTDSGGEWHG-QFMSFLSKLGIKCDSTPPYTPRYNGVVERALGLLRDKTVA-------LLRGVMERKSDRLWAEAMAYACD 117
            M+  DDFTR   + FLKHKSDA  A R+ +    A    SL + ++R+D+GGE+ G +F S  ++L IK + TP Y+P+YNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+
Sbjct:  454 MIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSL-VEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACE 579

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BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot
Match: A0A6H5KWE4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE4_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.500e-19
Identity = 55/127 (43.31%), Postives = 77/127 (60.63%), Query Frame = 0

Query:    1 MLCIDDFTRFKMVRFLKHKSDATNALRNIINDYFAS--ESLKIGVIRTDSGGEWHG-QFMSFLSKLGIKCDSTPPYTPRYNGVVERALGLLRDKTVA-------LLRGVMERKSDRLWAEAMAYACD 117
            M+  DDFTR   + FLK K DA +A R+ +    A    SL + ++R+D+GGE+ G +F S  ++L IK + TP Y+P+YNGV ER LGL+    +A       L   V   K+DRLWAEAM +AC+
Sbjct:    1 MIVKDDFTRRTWMYFLKSKPDAASAFRSFLASVRADGIPSL-VEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACE 126

[Close]

BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.040e-19
Identity = 56/127 (44.09%), Postives = 78/127 (61.42%), Query Frame = 0

Query:    1 MLCIDDFTRFKMVRFLKHKSDATNALRNIINDYFAS--ESLKIGVIRTDSGGEWHG-QFMSFLSKLGIKCDSTPPYTPRYNGVVERALGLLRDKTVA-------LLRGVMERKSDRLWAEAMAYACD 117
            M+  DDFTR   + FLK KSDA +A R+ +    A    SL + ++R+D+GGE+ G +F S  ++L IK + TP Y+P+YNGV ER LGL+    +A       L   V   K+DRLWAEAM +AC+
Sbjct:  653 MIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADGIPSL-VEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACE 778

[Close]

BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.090e-19
Identity = 53/121 (43.80%), Postives = 68/121 (56.20%), Query Frame = 0

Query:    5 DDFTRFKMVRFLKHKSDATNALRNIINDYFASE-SLKIGVIRTDSGGEWHGQFMSFLSKLGIKCDSTPPYTPRYNGVVERALGLLRDKTVALLRGVMERKS--------DRLWAEAMAYAC 116
            DDF+R+  V FLKHKSDA   L   + DY       ++ + RTD GGE+ GQF     + GIK + TPP+TP+YNGV ERALG L   T A L   ++             LWAEA++ AC
Sbjct:  672 DDFSRWTRVFFLKHKSDAAVGLEKFLADYRTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCAC 792

[Close]

BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot
Match: A0A6H5KKD1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD1_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.240e-19
Identity = 51/126 (40.48%), Postives = 77/126 (61.11%), Query Frame = 0

Query:    1 MLCIDDFTRFKMVRFLKHKSDATNALRNIINDYFASESLK-IGVIRTDSGGEWHG-QFMSFLSKLGIKCDSTPPYTPRYNGVVERALGLLRDKTVA-------LLRGVMERKSDRLWAEAMAYACD 117
            M+  DDFTR   + FL++KSDA +A R  +    A+     + ++R+D+GGE+ G +F S  ++L IK + TP Y+ +YNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+
Sbjct:    1 MIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSLQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACE 126

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot

BLAST of mRNA_H-elongata_contig81694.15834.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KKB4_9PHAE	8.640e-23	48.31	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5LL52_9PHAE	3.330e-22	48.31	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KGJ8_9PHAE	5.920e-21	44.07	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KAM7_9PHAE	1.650e-20	44.07	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JBA7_9PHAE	4.420e-20	44.09	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZH7_9PHAE	4.430e-20	44.09	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KWE4_9PHAE	1.500e-19	43.31	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K2M6_9PHAE	2.040e-19	44.09	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JM30_9PHAE	2.090e-19	43.80	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5KKD1_9PHAE	2.240e-19	40.48	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..117 e-value: 1.4E-14 score: 55.8
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 3..91 e-value: 1.2E-12 score: 48.1
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..118 score: 14.602
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..116

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig81694	contig	H-elongata_contig81694:878..1234 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig81694.15834.1	mRNA_H-elongata_contig81694.15834.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig81694 707..1309 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig81694.15834.1 ID=prot_H-elongata_contig81694.15834.1|Name=mRNA_H-elongata_contig81694.15834.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MLCIDDFTRFKMVRFLKHKSDATNALRNIINDYFASESLKIGVIRTDSGG
EWHGQFMSFLSKLGIKCDSTPPYTPRYNGVVERALGLLRDKTVALLRGVM
ERKSDRLWAEAMAYACDM*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf