mRNA_H-elongata_contig81591.15827.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81591.15827.1
Unique NamemRNA_H-elongata_contig81591.15827.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81591.15827.1 vs. uniprot
Match: D7G3J7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3J7_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 2.670e-41
Identity = 67/99 (67.68%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:    1 ECECQTGFREVPGLGCVDDTAPSLVLNGPSHMTMKQCDKYVERGVQVLDANSENTDRNVGVSYSQPPGRCSPEIGTFTVNYTLNTEWTYPAVQFIVRSV 297
            +C+C  G+  VP LGC+D+    L L GP+H+TMKQCDKYVE GVQV+DANSEN DRNVGVSYS+PPG+C+ E+GTFTVNYTLNTEW  P VQ+I+R V
Sbjct:  292 KCQCAPGYSHVPDLGCMDERPVWLDLKGPTHLTMKQCDKYVEHGVQVVDANSENHDRNVGVSYSKPPGKCASEMGTFTVNYTLNTEWMDPPVQYILRHV 390
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81591.15827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3J7_ECTSI2.670e-4167.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81591contigH-elongata_contig81591:1107..2440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.4
Seed ortholog evalue2.3e-34
Seed eggNOG ortholog2880.D7G3J7
EggNOG free text desc.EGF domain, unclasssified subfamily
EggNOG OGs2A3HA@1,2RY5A@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEGF-like calcium-binding domain
Ec32 orthologEc-19_004900.1
Exons2
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931223.9165444-CDS-H-elongata_contig81591:1106..12761622931223.9165444-CDS-H-elongata_contig81591:1106..1276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81591 1107..1276 +
1691679748.9573758-CDS-H-elongata_contig81591:1106..12761691679748.9573758-CDS-H-elongata_contig81591:1106..1276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81591 1107..1276 +
1622931223.944483-CDS-H-elongata_contig81591:2313..24401622931223.944483-CDS-H-elongata_contig81591:2313..2440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81591 2314..2440 +
1691679748.9685912-CDS-H-elongata_contig81591:2313..24401691679748.9685912-CDS-H-elongata_contig81591:2313..2440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81591 2314..2440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81591.15827.1prot_H-elongata_contig81591.15827.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81591 1107..2440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81591.15827.1

>prot_H-elongata_contig81591.15827.1 ID=prot_H-elongata_contig81591.15827.1|Name=mRNA_H-elongata_contig81591.15827.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
ECECQTGFREVPGLGCVDDTAPSLVLNGPSHMTMKQCDKYVERGVQVLDA
NSENTDRNVGVSYSQPPGRCSPEIGTFTVNYTLNTEWTYPAVQFIVRSV
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mRNA from alignment at H-elongata_contig81591:1107..2440+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81591.15827.1 ID=mRNA_H-elongata_contig81591.15827.1|Name=mRNA_H-elongata_contig81591.15827.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1334bp|location=Sequence derived from alignment at H-elongata_contig81591:1107..2440+ (Himanthalia elongata Himel1 dioecious)
GAGTGCGAGTGCCAAACGGGATTCCGGGAGGTTCCCGGGCTCGGCTGCGT
GGACGACACCGCTCCATCCCTCGTGCTGAACGGGCCTTCGCATATGACGA
TGAAGCAGTGTGATAAGTATGTCGAGAGAGGGGTGCAGGTGCTGGACGCG
AATTCCGAGAATACCGACAGGTTTGTGTATGCATGTTAGAGTATAATGAG
GAGAATGGGAGAGAGAGGAAATATATGAGGAGGAGTTTTCGTTTTACTTT
GAAAGGGATTGATGAGAGACGGAGAGGCGTTATCGTTGATAGGGGGTTGC
GCAAAACGAGGCGTTTTCGTTGTGATTTTGGGCGAGAGAGATTAATGAGT
GTCGCGTAACGGCACCGTTGTCTAAACATAATCTACGGCTTGGTACGTAC
TAGACTCAAAGCGTGTGTAAGAGGGTAGGAGTACCACGAATAGAGAGGCG
TTTTATTATATTGAGATATTATGTTGTACCGCGTACGGTCAACGCAGGTG
GTGGTGCATGCTTAAAAGATAAAACATATAGCAAAACCTCGAGGAACGAG
GGTAAAAAATCCCCCCCCCCTCAATTGTTTCGATGATCCACGAAGGCATG
GATGCCTCGACCTAGGAGATAGGAAGAGTATGTAGCAAGATCTTTTTATT
GGGGAAGTGCGTGATTGGACGGAGAAAATCGGACAGACGGGGATTCCTAT
CCATTATCCCCTATCCCTTCCCTAGAGTTTTCCGTCCCGGTATTGTTGGA
ATGCGTGATCGAACGCAGTTGGGATACAAGACGACATGCGTTTATCACTA
ACCCCCCCCCCCCCACTGATGTGCTATATCCACCATTATTCCATATAATG
AACACACGCTCTAGACGCGCACCAGCCATCCCGTATCTCCCAGTAAGTAT
ATGTAATATTATATCCACCTAGACGCCGCGGGGATAGGGAATGGTTGGTG
TATGTGTTATATATCCACCTCCATCGTTGACGATGCAGTACTCCACGGTT
CAGCTGGGTAGTTTTCCCCTATCCTCTATCCCCCGCCCTCGCCCTGCAGC
AGCATATACAGCAAAAGCCCCAAGCTTCACCTACCTCGTGACGAGGGTGG
TAACGGTCTCGTCTTTGCTGCTCTGGTCTACTCTGATCTGATCTAATCTG
ATCTAATCTTCTTCCTGCGACTGCCCCCTCCAAAAAACGCCGCGCGCGTG
CGCGCAGGAACGTGGGGGTGAGCTACTCCCAGCCGCCGGGCCGATGCTCC
CCGGAGATCGGCACCTTCACCGTGAACTACACCCTCAACACAGAGTGGAC
CTACCCTGCGGTCCAGTTCATCGTCAGATCCGTA
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Coding sequence (CDS) from alignment at H-elongata_contig81591:1107..2440+

>mRNA_H-elongata_contig81591.15827.1 ID=mRNA_H-elongata_contig81591.15827.1|Name=mRNA_H-elongata_contig81591.15827.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig81591:1107..2440+ (Himanthalia elongata Himel1 dioecious)
GAGTGCGAGTGCCAAACGGGATTCCGGGAGGTTCCCGGGCTCGGCTGCGT
GGACGACACCGCTCCATCCCTCGTGCTGAACGGGCCTTCGCATATGACGA
TGAAGCAGTGTGATAAGTATGTCGAGAGAGGGGTGCAGGTGCTGGACGCG
AATTCCGAGAATACCGACAGGAGTGCGAGTGCCAAACGGGATTCCGGGAG
GTTCCCGGGCTCGGCTGCGTGGACGACACCGCTCCATCCCTCGTGCTGAA
CGGGCCTTCGCATATGACGATGAAGCAGTGTGATAAGTATGTCGAGAGAG
GGGTGCAGGTGCTGGACGCGAATTCCGAGAATACCGACAGGAACGTGGGG
GTGAGCTACTCCCAGCCGCCGGGCCGATGCTCCCCGGAGATCGGCACCTT
CACCGTGAACTACACCCTCAACACAGAGTGGACCTACCCTGCGGTCCAGT
TCATCGTCAGATCCGTAGAACGTGGGGGTGAGCTACTCCCAGCCGCCGGG
CCGATGCTCCCCGGAGATCGGCACCTTCACCGTGAACTACACCCTCAACA
CAGAGTGGACCTACCCTGCGGTCCAGTTCATCGTCAGATCCGTA
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