mRNA_H-elongata_contig81568.15825.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81568.15825.1
Unique NamemRNA_H-elongata_contig81568.15825.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig81568.15825.1 vs. uniprot
Match: D7FVS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS0_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.690e-12
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 RPEKDKVALELGSAMALMLVLAEQCNIDLPLAVLRKIELNCRKYPAGLVRCS 156
            RPEKD V LELGSA   +L+LAEQCN+DL L+V  KI+LN +KYPA LVR S
Sbjct:   38 RPEKDVVVLELGSAAGCLLLLAEQCNVDLGLSVDLKIKLNAKKYPAVLVRGS 89          
BLAST of mRNA_H-elongata_contig81568.15825.1 vs. uniprot
Match: A0A6H5KIJ4_9PHAE (MazG domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ4_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.000e-10
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 RPEKDKVALELGSAMALMLVLAEQCNIDLPLAVLRKIELNCRKYPAGLVRCS 156
            R EKD V LE+GSA A +L+LAE+CN+DL L+V  K++LN +KYPA LVR S
Sbjct:   82 RTEKDVVVLEMGSAAACLLLLAERCNVDLGLSVDLKVKLNAKKYPAVLVRGS 133          
BLAST of mRNA_H-elongata_contig81568.15825.1 vs. uniprot
Match: A0A401TS59_CHIPU (Uncharacterized protein (Fragment) n=1 Tax=Chiloscyllium punctatum TaxID=137246 RepID=A0A401TS59_CHIPU)

HSP 1 Score: 57.4 bits (137), Expect = 4.350e-9
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    4 PEKDKVALELGSAMALMLVLAEQCNIDLPLAVLRKIELNCRKYPAGLVRCSDK 162
            PE+  ++ EL   +  ++ LAE+CN+DLP AVLRK+ELN RKYPA  VR S +
Sbjct:   44 PERAALSDELSDVLIYLVRLAEKCNVDLPRAVLRKMELNRRKYPADQVRGSSR 96          
BLAST of mRNA_H-elongata_contig81568.15825.1 vs. uniprot
Match: UPI0018641874 (glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=1 Tax=Colossoma macropomum TaxID=42526 RepID=UPI0018641874)

HSP 1 Score: 56.2 bits (134), Expect = 2.200e-8
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    4 PEKDKVALELGSAMALMLVLAEQCNIDLPLAVLRKIELNCRKYPAGLVRCSDK 162
            P+++KV+ EL      ++ LAE+C +DLP AVL+K+ELN RKYPA  V  S K
Sbjct:   95 PDREKVSQELSDVCIYLVELAEKCRVDLPQAVLQKMELNRRKYPASKVHGSAK 147          
BLAST of mRNA_H-elongata_contig81568.15825.1 vs. uniprot
Match: W5LSM3_ASTMX (dCTP pyrophosphatase 1 n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=W5LSM3_ASTMX)

HSP 1 Score: 56.2 bits (134), Expect = 3.340e-8
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    7 EKDKVALELGSAMALMLVLAEQCNIDLPLAVLRKIELNCRKYPAGLVRCSDK 162
            +++KVA EL      ++ LAE+C +DLP AVLRK+ELN RKYPA  V  S K
Sbjct:  123 DREKVAQELSDVCIYLVELAEKCRVDLPQAVLRKMELNRRKYPASKVHGSAK 174          
BLAST of mRNA_H-elongata_contig81568.15825.1 vs. uniprot
Match: UPI001B7F05F9 (glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=1 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7F05F9)

HSP 1 Score: 55.1 bits (131), Expect = 3.980e-8
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1
Query:    7 EKDKVALELGSAMALMLVLAEQCNIDLPLAVLRKIELNCRKYPAGLVRCSDK 162
            E + ++ EL   +  ++ LAE+C IDLP AVLRK+ELN +KYPA LVR S K
Sbjct:   72 EVEALSNELSDVLIYLVRLAEKCRIDLPRAVLRKVELNGQKYPADLVRGSAK 123          
BLAST of mRNA_H-elongata_contig81568.15825.1 vs. uniprot
Match: A0A8C5N1T2_9ANUR (dCTP pyrophosphatase 1 n=2 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5N1T2_9ANUR)

HSP 1 Score: 54.3 bits (129), Expect = 1.510e-7
Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    4 PEKDKVALELGSAMALMLVLAEQCNIDLPLAVLRKIELNCRKYPAGLVRCSDK 162
            P+++ ++ EL   +  +L LAE+C +DLP AVL K+ELN +KYPA  V+ S K
Sbjct:   98 PQREALSHELSDVLIYLLELAEKCRVDLPQAVLAKMELNAKKYPASRVQGSAK 150          
BLAST of mRNA_H-elongata_contig81568.15825.1 vs. uniprot
Match: A0A1X7UHB9_AMPQE (dCTP pyrophosphatase 1 n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UHB9_AMPQE)

HSP 1 Score: 53.5 bits (127), Expect = 2.220e-7
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    7 EKDK--VALELGSAMALMLVLAEQCNIDLPLAVLRKIELNCRKYPAGLVRCSDK 162
            +KD+  V  EL   +  ++ LAE+C+IDLP AVLRK ELNC+KYP   V  S K
Sbjct:   86 DKDRAHVGEELSDVLIYLIELAEKCHIDLPSAVLRKFELNCKKYPPEKVYGSSK 139          
BLAST of mRNA_H-elongata_contig81568.15825.1 vs. uniprot
Match: A0A3B4E8Y3_PYGNA (dCTP pyrophosphatase 1 n=2 Tax=Pygocentrus nattereri TaxID=42514 RepID=A0A3B4E8Y3_PYGNA)

HSP 1 Score: 53.1 bits (126), Expect = 4.580e-7
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    7 EKDKVALELGSAMALMLVLAEQCNIDLPLAVLRKIELNCRKYPAGLVRCSDK 162
            ++++V+ EL      ++ LAE+C +DLP AVL+K+ELN RKYPA  V  S K
Sbjct:  117 DRERVSQELSDVCIYLVELAEKCRVDLPQAVLQKMELNRRKYPASKVHGSSK 168          
BLAST of mRNA_H-elongata_contig81568.15825.1 vs. uniprot
Match: H3C5S7_TETNG (dCTP pyrophosphatase 1 n=2 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3C5S7_TETNG)

HSP 1 Score: 52.0 bits (123), Expect = 4.600e-7
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    7 EKDKVALELGSAMALMLVLAEQCNIDLPLAVLRKIELNCRKYPAGLVRCSDK 162
            +++ +A EL   +  ++ LAE+C++DLP AVLRK+ LN RKYPA  V  S K
Sbjct:   58 DRENLAHELSDVLIYLVELAEKCHVDLPQAVLRKMALNRRKYPASKVHGSAK 109          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81568.15825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVS0_ECTSI1.690e-1267.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIJ4_9PHAE2.000e-1061.54MazG domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A401TS59_CHIPU4.350e-952.83Uncharacterized protein (Fragment) n=1 Tax=Chilosc... [more]
UPI00186418742.200e-850.94glutamyl-tRNA(Gln) amidotransferase subunit B, mit... [more]
W5LSM3_ASTMX3.340e-853.85dCTP pyrophosphatase 1 n=2 Tax=Astyanax mexicanus ... [more]
UPI001B7F05F93.980e-853.85glutamyl-tRNA(Gln) amidotransferase subunit B, mit... [more]
A0A8C5N1T2_9ANUR1.510e-747.17dCTP pyrophosphatase 1 n=2 Tax=Leptobrachium leish... [more]
A0A1X7UHB9_AMPQE2.220e-751.85dCTP pyrophosphatase 1 n=2 Tax=Amphimedon queensla... [more]
A0A3B4E8Y3_PYGNA4.580e-748.08dCTP pyrophosphatase 1 n=2 Tax=Pygocentrus nattere... [more]
H3C5S7_TETNG4.600e-748.08dCTP pyrophosphatase 1 n=2 Tax=Tetraodon nigroviri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81568contigH-elongata_contig81568:286..456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931223.7757456-CDS-H-elongata_contig81568:285..4561622931223.7757456-CDS-H-elongata_contig81568:285..456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81568 286..456 +
1691679748.921706-CDS-H-elongata_contig81568:285..4561691679748.921706-CDS-H-elongata_contig81568:285..456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81568 286..456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81568.15825.1prot_H-elongata_contig81568.15825.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81568 286..456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81568.15825.1

>prot_H-elongata_contig81568.15825.1 ID=prot_H-elongata_contig81568.15825.1|Name=mRNA_H-elongata_contig81568.15825.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
RPEKDKVALELGSAMALMLVLAEQCNIDLPLAVLRKIELNCRKYPAGLVR
CSDKLQ*
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mRNA from alignment at H-elongata_contig81568:286..456+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81568.15825.1 ID=mRNA_H-elongata_contig81568.15825.1|Name=mRNA_H-elongata_contig81568.15825.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig81568:286..456+ (Himanthalia elongata Himel1 dioecious)
AGGCCAGAAAAGGACAAAGTCGCGCTGGAGCTCGGGTCCGCCATGGCCTT GATGCTGGTGTTGGCGGAGCAGTGCAACATAGATTTGCCGCTCGCCGTGT TGCGCAAGATTGAACTCAACTGCAGAAAGTACCCCGCCGGACTTGTCAGG TGCAGTGACAAATTACAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig81568:286..456+

>mRNA_H-elongata_contig81568.15825.1 ID=mRNA_H-elongata_contig81568.15825.1|Name=mRNA_H-elongata_contig81568.15825.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig81568:286..456+ (Himanthalia elongata Himel1 dioecious)
AGGCCAGAAAAGGACAAAGTCGCGCTGGAGCTCGGGTCCGCCATGGCCTT
GATGCTGGTGTTGGCGGAGCAGTGCAACATAGATTTGCCGCTCGCCGTGT
TGCGCAAGATTGAACTCAACTGCAGAAAGTACCCCGCCGGACTTGTCAGG
TGCAGTGACAAATTACAGTGAAGGCCAGAAAAGGACAAAGTCGCGCTGGA
GCTCGGGTCCGCCATGGCCTTGATGCTGGTGTTGGCGGAGCAGTGCAACA
TAGATTTGCCGCTCGCCGTGTTGCGCAAGATTGAACTCAACTGCAGAAAG
TACCCCGCCGGACTTGTCAGGTGCAGTGACAAATTACAGTGA
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