prot_H-elongata_contig81559.15824.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig81559.15824.1
Unique Nameprot_H-elongata_contig81559.15824.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length195
Homology
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BLAST of mRNA_H-elongata_contig81559.15824.1 vs. uniprot
Match: A0A6H5LBR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR8_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 5.000e-28
Identity = 87/195 (44.62%), Postives = 109/195 (55.90%), Query Frame = 0 
Query:    1 QALRHKTLRPPYPNEPALDNLSKFYKLLRNPPPSVKAVAGQASPAAVARGGANSAFVRQTPTGSATSRYSSILDESAVGVVSNTDAMSDRGGPSIRMDDGPATGVERLTGRYYGTSILRSAAEVEKMDKEMADRRRAA--GLGTAATSSRADRQGQGVNPLERIMQKYVGTGPYSLLYRLHEEKRRANVMIRRVN 193
            QAL HKTLRPP+P EPALDNL+KFY++L  PP S    A                      + S  S + S       GVV    A     G        PA+G  R  GR+    ++RSAA++E+ DK+MA RRR A   L   A +  AD  G+  NP++RI+Q+Y G+GPYSLLYRLHEE RRA+VMIRRVN
Sbjct:  152 QALLHKTLRPPFPREPALDNLAKFYRMLPKPPTSTGPAATAGXXXXXXXXXXXXXXXXXADSRSGVSYFGSGHRGGGAGVVPPPAAAGSPRGSHQARKTWPASGGGR--GRHG--LLVRSAADMERADKDMALRRRLAEGALAGDAETDPADSAGR-FNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVN 341
[Close]
BLAST of mRNA_H-elongata_contig81559.15824.1 vs. uniprot
Match: D7G0V3_ECTSI (Protein with LSm motif. Putative LSm11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V3_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 9.380e-28
Identity = 81/195 (41.54%), Postives = 108/195 (55.38%), Query Frame = 0 
Query:    1 QALRHKTLRPPYPNEPALDNLSKFYKLLRNPPPSVKAVAGQASPAAVARGGANSAFVRQTPTGSATSRYSSILDESAVGVVSNTDAMSDRGGPSIRMDDGPATGVERLTGRYYGTSILRSAAEVEKMDKEMADRRRAA--GLGTAATSSRADRQGQGVNPLERIMQKYVGTGPYSLLYRLHEEKRRANVMIRRVN 193
            QAL HKTLRPP+P EPALDNL+KFY++L  P  S    A                      + S    + +       GV+   +A     G     +  P +G  R+  RY  + ++RSAA++E+ DK+MA RRR A   L   A +  AD   +  NP++RI+Q+Y G+GPYSLLYRLHEE RRA+VMIRRVN
Sbjct:  152 QALLHKTLRPPFPKEPALDNLAKFYRMLPKPHASTGPTATAGGXXXXXXXXXXXXXXXAADSRSGVDYFGAGPRSGGAGVIPPPNAAGSPRGSHQARETWPTSGGGRV--RY--SPLVRSAADMERADKDMASRRRLAEGALAGDAEADPADFAEERFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVN 342
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81559.15824.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LBR8_9PHAE5.000e-2844.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0V3_ECTSI9.380e-2841.54Protein with LSm motif. Putative LSm11 n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81559contigH-elongata_contig81559:1907..2714 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81559.15824.1mRNA_H-elongata_contig81559.15824.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig81559 1907..2714 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig81559.15824.1 ID=prot_H-elongata_contig81559.15824.1|Name=mRNA_H-elongata_contig81559.15824.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp
QALRHKTLRPPYPNEPALDNLSKFYKLLRNPPPSVKAVAGQASPAAVARG
GANSAFVRQTPTGSATSRYSSILDESAVGVVSNTDAMSDRGGPSIRMDDG
PATGVERLTGRYYGTSILRSAAEVEKMDKEMADRRRAAGLGTAATSSRAD
RQGQGVNPLERIMQKYVGTGPYSLLYRLHEEKRRANVMIRRVNR*
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