mRNA_H-elongata_contig81516.15818.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig81516.15818.1 vs. uniprot
Match: A0A6H5L386_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L386_9PHAE) HSP 1 Score: 131 bits (329), Expect = 7.970e-34 Identity = 62/131 (47.33%), Postives = 87/131 (66.41%), Query Frame = 1
Query: 1 GFFSRSVAAVDGLLIKTVAPSSRDVKNPIRYFSGKKKVYGLSIQAVCDRHPRFLGFSANSLDATNDSAAWLRARVASLVENLPGAYFIIGDNAYANKEHLMTPYPERNQSTSKDIYNFLLSQCRIHVKMSF 393
G FS VA VDGL +KT+APS +D N I Y+SG+K YG+++QA+C RF SA + ATND AAWLR++++ V LP ++++GD AY E L+TPYP +N +D +NF LSQ R+ ++ SF
Sbjct: 196 GIFSFCVACVDGLFVKTLAPSPKDTANVIAYYSGQKCAYGINVQAMCTADYRFCSMSAITPGATNDWAAWLRSKLSRAVNRLPKGFYVLGDAAYPLSEQLLTPYPGKNLPLGEDSFNFHLSQLRVKIEQSF 326
BLAST of mRNA_H-elongata_contig81516.15818.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 2.200e-21 Identity = 43/127 (33.86%), Postives = 76/127 (59.84%), Query Frame = 1
Query: 13 RSVAAVDGLLIKTVAPSSRDVKNPIRYFSGKKKVYGLSIQAVCDRHPRFLGFSANSLDATNDSAAWLRARVASLVENLPGAYFIIGDNAYANKEHLMTPYPERNQSTSKDIYNFLLSQCRIHVKMSF 393
+ V A DGL ++ + PS+++V P Y++G KK +G++ QAVCD R + + N + ND A+ + L+ LP +F++GD AY E ++ P+P + S S+D N+ +SQCR+ ++ ++
Sbjct: 172 KCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTY 298
BLAST of mRNA_H-elongata_contig81516.15818.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 2.290e-21 Identity = 42/127 (33.07%), Postives = 77/127 (60.63%), Query Frame = 1
Query: 13 RSVAAVDGLLIKTVAPSSRDVKNPIRYFSGKKKVYGLSIQAVCDRHPRFLGFSANSLDATNDSAAWLRARVASLVENLPGAYFIIGDNAYANKEHLMTPYPERNQSTSKDIYNFLLSQCRIHVKMSF 393
+ V A+DGL ++ + PS+++V P Y++G K +G++ QAVCD R + ++ + + ND A+ A L+ LP +F++GD AY E ++ P+P + S S+D N+ +SQCR+ ++ ++
Sbjct: 20 KCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKNGFGMNFQAVCDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTY 146
BLAST of mRNA_H-elongata_contig81516.15818.1 vs. uniprot
Match: A0A2P4XB73_9STRA (DDE Tnp4 domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XB73_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 2.300e-21 Identity = 47/120 (39.17%), Postives = 73/120 (60.83%), Query Frame = 1
Query: 19 VAAVDGLLIKTVAPSSRDVKNPIRYFSGKKKVYGLSIQAVCDRHPRFLGFSANSLDATNDSAAWLRARVASLVENLPGAYFIIGDNAYANKEHLMTPYPERNQSTSK-DIYNFLLSQCRI 375
+ AV+G L P ++V +FSG + YG+++QA CD RF + +S T D+ A+L+ R++S+V+ LP +++GDNAY N HL+TP+P ST+ D YN+ LSQ R+
Sbjct: 144 IGAVNGWLCPIRVPWRKEVAQVRSFFSGHYQRYGVNVQACCDHRSRFTAVTCSSAGGTGDAVAFLKWRLSSVVKTLPNGLYVVGDNAYTNSNHLLTPFPRPKISTAAHDSYNYHLSQWRV 263
BLAST of mRNA_H-elongata_contig81516.15818.1 vs. uniprot
Match: A0A7S1BST2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BST2_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 1.620e-18 Identity = 46/136 (33.82%), Postives = 77/136 (56.62%), Query Frame = 1
Query: 1 GFFSRSVAAVDGLLIKTVAPSSRDVKNPIRYFSGKKKVYGLSIQAVCDRHPRFLGFSANSLDATNDSAAWLRARVASLVENLPGA-----YFIIGDNAYANKEHLMTPYPERNQSTSKDIYNFLLSQCRIHVKMSF 393
G FS + A+DGL ++ P RDV +P YFS +K Y L++QA+CDR L S +++DS+AW + ++ + +F++ D+AY +LM P+ + +S+D++NF LS RIH++ +F
Sbjct: 214 GVFSGCIGAIDGLAVRIECP--RDVMDPGSYFS-RKNFYALNVQAICDRQKNILWMSPGHQGSSHDSSAWFDTELHDILLRMKDQLSYHKFFLVRDSAYPISSYLMIPFLDPEPESSEDVFNFWLSNSRIHIECAF 346
BLAST of mRNA_H-elongata_contig81516.15818.1 vs. uniprot
Match: A0A8J5MEL1_9STRA (DDE Tnp4 domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MEL1_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 1.110e-16 Identity = 42/113 (37.17%), Postives = 63/113 (55.75%), Query Frame = 1
Query: 19 VAAVDGLLIKTVAPSSRDVKNPIRYFSGKKKVYGLSIQAVCDRHPRFLGFSANSLDATNDSAAWLRARVASLVENLPGAYFIIGDNAYANKEHLMTPYPERNQSTSK-DIYNF 354
+ A+ G L P +V +FSG + G+++QA CD RF S +S T D+ A+L+ R++ +V NLP +++GDNAY N HL+TP+ ST+ D YNF
Sbjct: 5 IGAIYGWLCPIRVPRKTEVTRVRGFFSGHYQRDGVNVQACCDHLSRFTAVSCSSPGGTGDAVAFLKWRLSLVVNNLPSGLYVVGDNAYTNSNHLLTPFLRPRISTAAHDSYNF 117
BLAST of mRNA_H-elongata_contig81516.15818.1 vs. uniprot
Match: A0A5D6XPM3_9STRA (DDE Tnp4 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPM3_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 4.530e-16 Identity = 43/127 (33.86%), Postives = 73/127 (57.48%), Query Frame = 1
Query: 19 VAAVDGLLIKTVAP--SSRDVKNPIRYFSGKKKVYGLSIQAVCDRHPRFLGFSANSLDATNDSAAWLRARVASLVENLPGAYFIIGDNAYANKEHLMTPYPERNQSTSKDIYNFLLSQCRIHVKMSF 393
V +DG L + AP S + P R++SG+ + +G S+Q+VCD RF S + +D A+ + ++ VE+LP +++ D+AY +HL+TP+ + + D +NF LSQ R+ V+M+F
Sbjct: 105 VGCLDGRLCEIQAPRQSQCEGAGPRRFYSGRYRWFGASMQSVCDAECRFTYVSVLCPGSVSDLVAYEESALSVKVESLPSGVYLLADSAYVASDHLLTPFAGKALTAQVDAFNFYLSQLRMSVEMAF 231
BLAST of mRNA_H-elongata_contig81516.15818.1 vs. uniprot
Match: A0A2P4XA88_9STRA (DDE Tnp4 domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XA88_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 5.240e-12 Identity = 32/67 (47.76%), Postives = 49/67 (73.13%), Query Frame = 1
Query: 196 DSAAWLRARVASLVENLPGAYFIIGDNAYANKEHLMTPYPERNQSTSK-DIYNFLLSQCRIHVKMSF 393
D+ A+L+ R++S+V+NLP +++GDNAY N HL+TP+P ST+ D YN+ LSQ RI ++M+F
Sbjct: 200 DAVAFLKWRLSSVVKNLPNGLYVVGDNAYTNSNHLLTPFPRPKISTAAHDSYNYHLSQVRIRIEMAF 266
BLAST of mRNA_H-elongata_contig81516.15818.1 vs. uniprot
Match: W2J7X4_PHYPR (DDE Tnp4 domain-containing protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=W2J7X4_PHYPR) HSP 1 Score: 63.9 bits (154), Expect = 7.190e-10 Identity = 30/69 (43.48%), Postives = 46/69 (66.67%), Query Frame = 1
Query: 193 NDSAAWLRARVASLVENLPGAYFIIGDNAYANKEHLMTPYP--ERNQSTSKDIYNFLLSQCRIHVKMSF 393
NDS A+ R +++ L++ +PG YF+IGDNAY +MTP+ + + +D YNF +SQ RI V+M+F
Sbjct: 2 NDSYAFQRWKLSKLLKEIPGPYFVIGDNAYVQSRRVMTPFNKVQLDDRPKRDSYNFHVSQLRIRVEMAF 70
BLAST of mRNA_H-elongata_contig81516.15818.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 1.580e-7 Identity = 30/101 (29.70%), Postives = 54/101 (53.47%), Query Frame = 1
Query: 13 RSVAAVDGLLIKTVAPSSRDVKNPIRYFSGKKKVYGLSIQAVCDRHPRFLGFSANSLDATNDSAAWLRARVASLVENLPGAYFIIGDNAYANKEHLMTPYP 315
+ V A+DGL ++ + PS+++V P Y++G KK +G++ Q VC + ND A+ + L+ LP +F++G+ AY E ++ P+P
Sbjct: 183 KCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ-VCSQ---------------NDRTAFNFSGFDKLLAGLPEGHFVVGNAAYGASERVVVPFP 267 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81516.15818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig81516.15818.1 >prot_H-elongata_contig81516.15818.1 ID=prot_H-elongata_contig81516.15818.1|Name=mRNA_H-elongata_contig81516.15818.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp GFFSRSVAAVDGLLIKTVAPSSRDVKNPIRYFSGKKKVYGLSIQAVCDRHback to top mRNA from alignment at H-elongata_contig81516:620..1021+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig81516.15818.1 ID=mRNA_H-elongata_contig81516.15818.1|Name=mRNA_H-elongata_contig81516.15818.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=402bp|location=Sequence derived from alignment at H-elongata_contig81516:620..1021+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig81516:620..1021+ >mRNA_H-elongata_contig81516.15818.1 ID=mRNA_H-elongata_contig81516.15818.1|Name=mRNA_H-elongata_contig81516.15818.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig81516:620..1021+ (Himanthalia elongata Himel1 dioecious)back to top |